| Year |
Citation |
Score |
| 2025 |
Agarwal V, Inoue F, Schubach M, Penzar D, Martin BK, Dash PM, Keukeleire P, Zhang Z, Sohota A, Zhao J, Georgakopoulos-Soares I, Noble WS, Yardımcı GG, Kulakovskiy IV, Kircher M, et al. Massively parallel characterization of transcriptional regulatory elements. Nature. PMID 39814889 DOI: 10.1038/s41586-024-08430-9 |
0.358 |
|
| 2023 |
Agarwal V, Inoue F, Schubach M, Martin BK, Dash PM, Zhang Z, Sohota A, Noble WS, Yardimci GG, Kircher M, Shendure J, Ahituv N. Massively parallel characterization of transcriptional regulatory elements in three diverse human cell types. Biorxiv : the Preprint Server For Biology. PMID 36945371 DOI: 10.1101/2023.03.05.531189 |
0.352 |
|
| 2020 |
Kim HJ, Yardımcı GG, Bonora G, Ramani V, Liu J, Qiu R, Lee C, Hesson J, Ware CB, Shendure J, Duan Z, Noble WS. Capturing cell type-specific chromatin compartment patterns by applying topic modeling to single-cell Hi-C data. Plos Computational Biology. 16: e1008173. PMID 32946435 DOI: 10.1371/Journal.Pcbi.1008173 |
0.378 |
|
| 2019 |
Bertero A, Fields PA, Ramani V, Bonora G, Yardimci GG, Reinecke H, Pabon L, Noble WS, Shendure J, Murry CE. Dynamics of genome reorganization during human cardiogenesis reveal an RBM20-dependent splicing factory. Nature Communications. 10: 1538. PMID 30948719 DOI: 10.1038/S41467-019-09483-5 |
0.44 |
|
| 2019 |
Yardımcı GG, Ozadam H, Sauria MEG, Ursu O, Yan KK, Yang T, Chakraborty A, Kaul A, Lajoie BR, Song F, Zhan Y, Ay F, Gerstein M, Kundaje A, Li Q, et al. Measuring the reproducibility and quality of Hi-C data. Genome Biology. 20: 57. PMID 30890172 DOI: 10.1186/S13059-019-1658-7 |
0.365 |
|
| 2018 |
Dixon JR, Xu J, Dileep V, Zhan Y, Song F, Le VT, Yardımcı GG, Chakraborty A, Bann DV, Wang Y, Clark R, Zhang L, Yang H, Liu T, Iyyanki S, et al. Integrative detection and analysis of structural variation in cancer genomes. Nature Genetics. PMID 30202056 DOI: 10.1038/S41588-018-0195-8 |
0.363 |
|
| 2018 |
Lin D, Bonora G, Yardımcı GG, Noble WS. Computational methods for analyzing and modeling genome structure and organization. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. e1435. PMID 30022617 DOI: 10.1002/Wsbm.1435 |
0.314 |
|
| 2018 |
Ursu O, Boley N, Taranova M, Wang YXR, Yardimci GG, Noble WS, Kundaje A. GenomeDISCO: A concordance score for chromosome conformation capture experiments using random walks on contact map graphs. Bioinformatics (Oxford, England). PMID 29554289 DOI: 10.1093/Bioinformatics/Bty164 |
0.313 |
|
| 2017 |
Yang T, Zhang F, Yardimci GG, Song F, Hardison RC, Noble WS, Yue F, Li Q. HiCRep: assessing the reproducibility of Hi-C data using a stratum- adjusted correlation coefficient. Genome Research. PMID 28855260 DOI: 10.1101/Gr.220640.117 |
0.336 |
|
| 2017 |
Yardımcı GG, Noble WS. Software tools for visualizing Hi-C data. Genome Biology. 18: 26. PMID 28159004 DOI: 10.1186/S13059-017-1161-Y |
0.309 |
|
| 2015 |
Yardımcı GG, Noble WS. Predictive model of 3D domain formation via CTCF-mediated extrusion. Proceedings of the National Academy of Sciences of the United States of America. 112: 14404-5. PMID 26567152 DOI: 10.1073/Pnas.1519849112 |
0.388 |
|
| 2015 |
Moreno-Risueno MA, Sozzani R, Yardımcı GG, Petricka JJ, Vernoux T, Blilou I, Alonso J, Winter CM, Ohler U, Scheres B, Benfey PN. Transcriptional control of tissue formation throughout root development. Science (New York, N.Y.). 350: 426-30. PMID 26494755 DOI: 10.1126/Science.Aad1171 |
0.482 |
|
| 2012 |
Tewari AK, Yardimci GG, Shibata Y, Sheffield NC, Song L, Taylor BS, Georgiev SG, Coetzee GA, Ohler U, Furey TS, Crawford GE, Febbo PG. Chromatin accessibility reveals insights into androgen receptor activation and transcriptional specificity. Genome Biology. 13: R88. PMID 23034120 DOI: 10.1186/Gb-2012-13-10-R88 |
0.534 |
|
| 2012 |
Natarajan A, Yardimci GG, Sheffield NC, Crawford GE, Ohler U. Predicting cell-type-specific gene expression from regions of open chromatin. Genome Research. 22: 1711-22. PMID 22955983 DOI: 10.1101/Gr.135129.111 |
0.541 |
|
| 2012 |
Tewari A, Yardimci G, Shibata Y, Sheffield N, Song L, Taylor B, Coetzee G, Furey T, Crawford G, Febbo P. Abstract A12: Chromatin accessibility reveals insight into androgen receptor activation and transcriptional specificity Cancer Research. 72: A12-A12. DOI: 10.1158/1538-7445.Prca2012-A12 |
0.421 |
|
| 2012 |
Tewari AK, Yardimci GG, Crawford GE, Febbo PG. Abstract 2923: Androgen receptor activation changes chromatin structure and transcriptional activation Cancer Research. 72: 2923-2923. DOI: 10.1158/1538-7445.Am2012-2923 |
0.459 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2013 |
Chandrasekaran SN, Yardimci GG, Erdogan O, Roach J, Carter CW. Statistical evaluation of the Rodin-Ohno hypothesis: sense/antisense coding of ancestral class I and II aminoacyl-tRNA synthetases. Molecular Biology and Evolution. 30: 1588-604. PMID 23576570 DOI: 10.1093/Molbev/Mst070 |
0.285 |
|
| 2021 |
Mulqueen RM, Pokholok D, O'Connell BL, Thornton CA, Zhang F, O'Roak BJ, Link J, Yardımcı GG, Sears RC, Steemers FJ, Adey AC. High-content single-cell combinatorial indexing. Nature Biotechnology. PMID 34226710 DOI: 10.1038/s41587-021-00962-z |
0.278 |
|
| 2023 |
Queitsch K, Moore TW, O'Connell BL, Nichols RV, Muschler JL, Keith D, Lopez C, Sears RC, Mills GB, Yardımcı GG, Adey AC. Accessible high-throughput single-cell whole-genome sequencing with paired chromatin accessibility. Cell Reports Methods. 100625. PMID 37918402 DOI: 10.1016/j.crmeth.2023.100625 |
0.276 |
|
| 2024 |
Rylaarsdam LE, Nichols RV, O'Connell BL, Coleman S, Yardımcı GG, Adey AC. Single-cell DNA methylation analysis tool Amethyst reveals distinct noncanonical methylation patterns in human glial cells. Biorxiv : the Preprint Server For Biology. PMID 39211069 DOI: 10.1101/2024.08.13.607670 |
0.249 |
|
| 2022 |
Yashar WM, Kong G, VanCampen J, Curtiss BM, Coleman DJ, Carbone L, Yardimci GG, Maxson JE, Braun TP. GoPeaks: histone modification peak calling for CUT&Tag. Genome Biology. 23: 144. PMID 35788238 DOI: 10.1186/s13059-022-02707-w |
0.239 |
|
| 2018 |
Liu J, Lin D, Yardimci GG, Noble WS. Unsupervised embedding of single-cell Hi-C data. Bioinformatics (Oxford, England). 34: i96-i104. PMID 29950005 DOI: 10.1093/bioinformatics/bty285 |
0.22 |
|
| 2024 |
Yao D, Tycko J, Oh JW, Bounds LR, Gosai SJ, Lataniotis L, Mackay-Smith A, Doughty BR, Gabdank I, Schmidt H, Guerrero-Altamirano T, Siklenka K, Guo K, White AD, Youngworth I, et al. Multicenter integrated analysis of noncoding CRISPRi screens. Nature Methods. PMID 38504114 DOI: 10.1038/s41592-024-02216-7 |
0.219 |
|
| 2006 |
Yardimci GG, Küçükural A, Saygin Y, Sezerman U. Modified association rule mining approach for the MHC-peptide binding problem Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4263: 165-173. |
0.116 |
|
| 2023 |
Shah VM, Rizvi S, Smith A, Tsuda M, Krieger M, Pelz C, MacPherson K, Eng J, Chin K, Munks MW, Daniel CJ, Al-Fatease A, Yardimci GG, Langer EM, Brody JR, et al. Micelle-Formulated Juglone Effectively Targets Pancreatic Cancer and Remodels the Tumor Microenvironment. Pharmaceutics. 15. PMID 38139993 DOI: 10.3390/pharmaceutics15122651 |
0.113 |
|
| 2015 |
Kutlubay Z, Yardimci G, Engin B, Demirkesen C, Aydin Ö, Khatib R, Tuzun Y. Pseudo-Kaposi sarcoma (acroangiodermatitis): Occurring after bullous erysipelas Dermatology Online Journal. 21. |
0.069 |
|
| 2014 |
Kutlubay Z, Yardimci G, Gokler G, Engin B. A dystrophic calcinosis cutis case treated with CO2 laser Journal of Cosmetic and Laser Therapy. 16: 144-146. PMID 24131067 DOI: 10.3109/14764172.2013.854622 |
0.057 |
|
| 2013 |
Kutlubay Z, Küçüktaş M, Yardimci G, Engin B, Serdaroǧlu S. Evaluation of effectiveness of cryotherapy on the treatment of cutaneous kaposi's sarcoma Dermatologic Surgery. 39: 1502-1506. PMID 23879208 DOI: 10.1111/dsu.12285 |
0.043 |
|
| 2012 |
Engin B, Kutlubay Z, Karakuş O, Yardimci G, Doǧan Z, Tüzün Y, Serdaroǧlu S. Evaluation of effectiveness of erbium:yttrium-aluminum-garnet laser on atrophic facial acne scars with 22-MHz digital ultrasonography in a Turkish population Journal of Dermatology. 39: 982-988. PMID 22973994 DOI: 10.1111/j.1346-8138.2012.01649.x |
0.036 |
|
| 2013 |
Küçüktaş M, Kutlubay Z, Yardimci G, Khatib R, Tüzün Y. Comparison of effectiveness of electrocautery and cryotherapy in partial matrixectomy after partial nail extraction in the treatment of ingrown nails Dermatologic Surgery. 39: 274-280. PMID 23227941 DOI: 10.1111/dsu.12068 |
0.033 |
|
| 2014 |
Engin B, Kutlubay Z, Yardimci G, Vehid HE, Ambarcioğlu P, Serdaroğlu S, Tüzün Y. Evaluation of body composition parameters in patients with psoriasis International Journal of Dermatology. 53: 1468-1473. PMID 25267412 DOI: 10.1111/ijd.12171 |
0.02 |
|
| Hide low-probability matches. |