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Spencer V. Nyholm, Ph.D. - Publications

Affiliations: 
2001 University of Hawai'i at Manoa, Honolulu, HI 
 2007- Molecular and Cell Biology University of Connecticut, Storrs, CT, United States 
Area:
Marine symbiosis, innate immunity
Website:
https://mcb.uconn.edu/person/spencer-nyholm/
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42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Vijayan N, McAnulty SJ, Sanchez G, Jolly J, Ikeda Y, Nishiguchi MK, Réveillac E, Gestal C, Spady BL, Li DH, Burford BP, Kerwin AH, Nyholm SV. Evolutionary history influences the microbiomes of a female symbiotic reproductive organ in cephalopods. Applied and Environmental Microbiology. e0099023. PMID 38315021 DOI: 10.1128/aem.00990-23  0.36
2023 Rouressol L, Briseno J, Vijayan N, Chen GY, Ritschard EA, Sanchez G, Nyholm SV, McFall-Ngai MJ, Simakov O. Emergence of novel genomic regulatory regions associated with light-organ development in the bobtail squid. Iscience. 26: 107091. PMID 37426346 DOI: 10.1016/j.isci.2023.107091  0.583
2023 McAnulty SJ, Kerwin AH, Koch E, Nuttall B, Suria AM, Collins AJ, Schleicher TR, Rader BA, Nyholm SV. "Failure To Launch": Development of a Reproductive Organ Linked to Symbiotic Bacteria. Mbio. e0213122. PMID 36656023 DOI: 10.1128/mbio.02131-22  0.377
2022 Schmidbaur H, Kawaguchi A, Clarence T, Fu X, Hoang OP, Zimmermann B, Ritschard EA, Weissenbacher A, Foster JS, Nyholm SV, Bates PA, Albertin CB, Tanaka E, Simakov O. Emergence of novel cephalopod gene regulation and expression through large-scale genome reorganization. Nature Communications. 13: 2172. PMID 35449136 DOI: 10.1038/s41467-022-29694-7  0.59
2022 Nyholm SV, McFall-Ngai MJ. Publisher Correction: A lasting symbiosis: how the Hawaiian bobtail squid finds and keeps its bioluminescent bacterial partner. Nature Reviews. Microbiology. 20: 315. PMID 35304589 DOI: 10.1038/s41579-022-00723-y  0.516
2021 Kerwin AH, McAnulty SJ, Nyholm SV. Development of the Accessory Nidamental Gland and Associated Bacterial Community in the Hawaiian Bobtail Squid, . The Biological Bulletin. 240: 205-218. PMID 34129444 DOI: 10.1086/713965  0.355
2021 Nyholm SV, McFall-Ngai MJ. A lasting symbiosis: how the Hawaiian bobtail squid finds and keeps its bioluminescent bacterial partner. Nature Reviews. Microbiology. PMID 34089010 DOI: 10.1038/s41579-021-00567-y  0.605
2020 Nyholm SV. In the beginning: egg-microbe interactions and consequences for animal hosts. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 375: 20190593. PMID 32772674 DOI: 10.1098/Rstb.2019.0593  0.419
2019 Kerwin AH, Gromek SM, Suria AM, Samples RM, Deoss DJ, O'Donnell K, Frasca S, Sutton DA, Wiederhold NP, Balunas MJ, Nyholm SV. Shielding the Next Generation: Symbiotic Bacteria from a Reproductive Organ Protect Bobtail Squid Eggs from Fungal Fouling. Mbio. 10. PMID 31662458 DOI: 10.1128/Mbio.02376-19  0.436
2019 Baker LJ, Freed LL, Easson CG, Lopez JV, Fenolio D, Sutton TT, Nyholm SV, Hendry TA. Diverse deep-sea anglerfishes share a genetically reduced luminous symbiont that is acquired from the environment. Elife. 8. PMID 31571583 DOI: 10.7554/Elife.47606  0.434
2019 Lynch JB, Schwartzman JA, Bennett BD, McAnulty SJ, Knop M, Nyholm SV, Ruby EG. Ambient pH alters protein content of outer membrane vesicles, driving host development in a beneficial symbiosis. Journal of Bacteriology. PMID 31331976 DOI: 10.1128/Jb.00319-19  0.477
2019 Belcaid M, Casaburi G, McAnulty SJ, Schmidbaur H, Suria AM, Moriano-Gutierrez S, Pankey MS, Oakley TH, Kremer N, Koch EJ, Collins AJ, Nguyen H, Lek S, Goncharenko-Foster I, Minx P, ... ... Nyholm SV, et al. Symbiotic organs shaped by distinct modes of genome evolution in cephalopods. Proceedings of the National Academy of Sciences of the United States of America. PMID 30635418 DOI: 10.1073/Pnas.1817322116  0.72
2019 Baker LJ, Freed LL, Easson CG, Lopez JV, Fenolio D, Sutton TT, Nyholm SV, Hendry TA. Author response: Diverse deep-sea anglerfishes share a genetically reduced luminous symbiont that is acquired from the environment Elife. DOI: 10.7554/Elife.47606.023  0.301
2017 Kerwin AH, Nyholm SV. Symbiotic bacteria associated with a bobtail squid reproductive system are detectable in the environment, and stable in the host and in eggs throughout development. Environmental Microbiology. PMID 28063183 DOI: 10.1111/1462-2920.13665  0.353
2016 McAnulty SJ, Nyholm SV. The Role of Hemocytes in the Hawaiian Bobtail Squid, Euprymna scolopes: A Model Organism for Studying Beneficial Host-Microbe Interactions. Frontiers in Microbiology. 7: 2013. PMID 28111565 DOI: 10.3389/Fmicb.2016.02013  0.532
2016 Gromek SM, Suria AM, Fullmer MS, Garcia JL, Gogarten JP, Nyholm SV, Balunas MJ. Leisingera sp. JC1, a Bacterial Isolate from Hawaiian Bobtail Squid Eggs, Produces Indigoidine and Differentially Inhibits Vibrios. Frontiers in Microbiology. 7: 1342. PMID 27660622 DOI: 10.3389/Fmicb.2016.01342  0.41
2015 Collins AJ, Fullmer MS, Gogarten JP, Nyholm SV. Comparative genomics of Roseobacter clade bacteria isolated from the accessory nidamental gland of Euprymna scolopes. Frontiers in Microbiology. 6: 123. PMID 25755651 DOI: 10.3389/Fmicb.2015.00123  0.424
2014 Beinart RA, Nyholm SV, Dubilier N, Girguis PR. Intracellular Oceanospirillales inhabit the gills of the hydrothermal vent snail Alviniconcha with chemosynthetic, γ-Proteobacterial symbionts. Environmental Microbiology Reports. 6: 656-64. PMID 25756119 DOI: 10.1111/1758-2229.12183  0.422
2014 Schleicher TR, VerBerkmoes NC, Shah M, Nyholm SV. Colonization state influences the hemocyte proteome in a beneficial squid-Vibrio symbiosis. Molecular & Cellular Proteomics : McP. 13: 2673-86. PMID 25038065 DOI: 10.1074/Mcp.M113.037259  0.425
2012 Albertin CB, Bonnaud L, Brown CT, Crookes-Goodson WJ, da Fonseca RR, Di Cristo C, Dilkes BP, Edsinger-Gonzales E, Freeman RM, Hanlon RT, Koenig KM, Lindgren AR, Martindale MQ, Minx P, Moroz LL, ... ... Nyholm SV, et al. Cephalopod genomics: A plan of strategies and organization. Standards in Genomic Sciences. 7: 175-88. PMID 23451296 DOI: 10.4056/Sigs.3136559  0.329
2012 Nyholm SV, Graf J. Knowing your friends: invertebrate innate immunity fosters beneficial bacterial symbioses. Nature Reviews. Microbiology. 10: 815-27. PMID 23147708 DOI: 10.1038/Nrmicro2894  0.447
2012 Rader BA, Nyholm SV. Host/microbe interactions revealed through "omics" in the symbiosis between the Hawaiian bobtail squid Euprymna scolopes and the bioluminescent bacterium Vibrio fischeri. The Biological Bulletin. 223: 103-11. PMID 22983036 DOI: 10.1086/Bblv223N1P103  0.457
2012 Nyholm SV, Song P, Dang J, Bunce C, Girguis PR. Expression and putative function of innate immunity genes under in situ conditions in the symbiotic hydrothermal vent tubeworm Ridgeia piscesae. Plos One. 7: e38267. PMID 22701617 DOI: 10.1371/Journal.Pone.0038267  0.501
2012 Fidopiastis PM, Rader BA, Gerling DG, Gutierrez NA, Watkins KH, Frey MW, Nyholm SV, Whistler CA. Characterization of a Vibrio fischeri aminopeptidase and evidence for its influence on an early stage of squid colonization. Journal of Bacteriology. 194: 3995-4002. PMID 22636772 DOI: 10.1128/Jb.00108-12  0.377
2012 Collins AJ, Schleicher TR, Rader BA, Nyholm SV. Understanding the role of host hemocytes in a squid/vibrio symbiosis using transcriptomics and proteomics. Frontiers in Immunology. 3: 91. PMID 22590467 DOI: 10.3389/Fimmu.2012.00091  0.465
2012 Collins AJ, LaBarre BA, Won BS, Shah MV, Heng S, Choudhury MH, Haydar SA, Santiago J, Nyholm SV. Diversity and partitioning of bacterial populations within the accessory nidamental gland of the squid Euprymna scolopes. Applied and Environmental Microbiology. 78: 4200-8. PMID 22504817 DOI: 10.1128/Aem.07437-11  0.516
2011 Schleicher TR, Nyholm SV. Characterizing the host and symbiont proteomes in the association between the Bobtail squid, Euprymna scolopes, and the bacterium, Vibrio fischeri. Plos One. 6: e25649. PMID 21998678 DOI: 10.1371/Journal.Pone.0025649  0.481
2011 Collins AJ, Nyholm SV. Draft genome of Phaeobacter gallaeciensis ANG1, a dominant member of the accessory nidamental gland of Euprymna scolopes. Journal of Bacteriology. 193: 3397-8. PMID 21551313 DOI: 10.1128/Jb.05139-11  0.362
2010 Collins AJ, Nyholm SV. Obtaining hemocytes from the Hawaiian bobtail squid Euprymna scolopes and observing their adherence to symbiotic and non-symbiotic bacteria. Journal of Visualized Experiments : Jove. PMID 20150890 DOI: 10.3791/1714  0.445
2010 Wier AM, Nyholm SV, Mandel MJ, Massengo-Tiassé RP, Schaefer AL, Koroleva I, Splinter-Bondurant S, Brown B, Manzella L, Snir E, Almabrazi H, Scheetz TE, Bonaldo Mde F, Casavant TL, Soares MB, et al. Transcriptional patterns in both host and bacterium underlie a daily rhythm of anatomical and metabolic change in a beneficial symbiosis. Proceedings of the National Academy of Sciences of the United States of America. 107: 2259-64. PMID 20133870 DOI: 10.1073/Pnas.0909712107  0.63
2010 McFall-Ngai M, Nyholm SV, Castillo MG. The role of the immune system in the initiation and persistence of the Euprymna scolopes--Vibrio fischeri symbiosis. Seminars in Immunology. 22: 48-53. PMID 20036144 DOI: 10.1016/J.Smim.2009.11.003  0.585
2009 Nyholm SV, Stewart JJ, Ruby EG, McFall-Ngai MJ. Recognition between symbiotic Vibrio fischeri and the haemocytes of Euprymna scolopes. Environmental Microbiology. 11: 483-93. PMID 19196278 DOI: 10.1111/J.1462-2920.2008.01788.X  0.639
2009 Nyholm SV. Peptidoglycan monomer release and Vibrio fischeri. Journal of Bacteriology. 191: 1997-9. PMID 19151142 DOI: 10.1128/Jb.01801-08  0.399
2008 Nyholm SV, Nishiguchi MK. THE EVOLUTIONARY ECOLOGY OF A SEPIOLID SQUID-VIBRIO ASSOCIATION: FROM CELL TO ENVIRONMENT. Vie Et Milieu (Paris, France : 1980). 58: 175-184. PMID 20414482  0.327
2008 Nyholm SV, Robidart J, Girguis PR. Coupling metabolite flux to transcriptomics: insights into the molecular mechanisms underlying primary productivity by the hydrothermal vent tubeworm Ridgeia piscesae. The Biological Bulletin. 214: 255-65. PMID 18574102 DOI: 10.2307/25470667  0.415
2006 Nyholm SV, Passegue E, Ludington WB, Voskoboynik A, Mitchel K, Weissman IL, De Tomaso AW. fester, A candidate allorecognition receptor from a primitive chordate. Immunity. 25: 163-73. PMID 16860765 DOI: 10.1016/J.Immuni.2006.04.011  0.638
2005 De Tomaso AW, Nyholm SV, Palmeri KJ, Ishizuka KJ, Ludington WB, Mitchel K, Weissman IL. Isolation and characterization of a protochordate histocompatibility locus. Nature. 438: 454-9. PMID 16306984 DOI: 10.1038/Nature04150  0.693
2004 Nyholm SV, McFall-Ngai MJ. The winnowing: establishing the squid-vibrio symbiosis. Nature Reviews. Microbiology. 2: 632-42. PMID 15263898 DOI: 10.1038/Nrmicro957  0.626
2003 Nyholm SV, McFall-Ngai MJ. Dominance of Vibrio fischeri in secreted mucus outside the light organ of Euprymna scolopes: the first site of symbiont specificity. Applied and Environmental Microbiology. 69: 3932-7. PMID 12839763 DOI: 10.1128/Aem.69.7.3932-3937.2003  0.605
2002 Nyholm SV, Deplancke B, Gaskins HR, Apicella MA, McFall-Ngai MJ. Roles of Vibrio fischeri and nonsymbiotic bacteria in the dynamics of mucus secretion during symbiont colonization of the Euprymna scolopes light organ. Applied and Environmental Microbiology. 68: 5113-22. PMID 12324362 DOI: 10.1128/Aem.68.10.5113-5122.2002  0.62
2000 Nyholm SV, Stabb EV, Ruby EG, McFall-Ngai MJ. Establishment of an animal-bacterial association: recruiting symbiotic vibrios from the environment. Proceedings of the National Academy of Sciences of the United States of America. 97: 10231-5. PMID 10963683 DOI: 10.1073/Pnas.97.18.10231  0.64
1998 Nyholm SV, McFall-Ngai MJ. Sampling the light-organ microenvironment of Euprymna scolopes: description of a population of host cells in association with the bacterial symbiont Vibrio fischeri. The Biological Bulletin. 195: 89-97. PMID 9818359 DOI: 10.2307/1542815  0.645
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