Martin Lercher - Publications

Affiliations: 
University of Düsseldorf, Düsseldorf, Nordrhein-Westfalen, Germany 
Website:
http://www.cs.uni-duesseldorf.de/NewMA/Personen/entry_42

71 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Subramanian B, Gao S, Lercher MJ, Hu S, Chen WH. Evolview v3: a webserver for visualization, annotation, and management of phylogenetic trees. Nucleic Acids Research. PMID 31114888 DOI: 10.1093/nar/gkz357  0.56
2017 Gao NL, Zhang C, Zhang Z, Hu S, Lercher MJ, Zhao XM, Bork P, Liu Z, Chen WH. MVP: a microbe-phage interaction database. Nucleic Acids Research. PMID 29177508 DOI: 10.1093/nar/gkx1124  1
2017 Gao N, Lu G, Lercher MJ, Chen WH. Selection for energy efficiency drives strand-biased gene distribution in prokaryotes. Scientific Reports. 7: 10572. PMID 28874819 DOI: 10.1038/s41598-017-11159-3  0.56
2017 Jin H, Lu X, Ni J, Sun J, Gu B, Ding B, Zhu H, Ma C, Cui M, Xu Y, Zhang Z, Lercher M, Chen J, Gao N, Wang S. HOTAIR rs7958904 polymorphism is associated with increased cervical cancer risk in a Chinese population. Scientific Reports. 7: 3144. PMID 28600545 DOI: 10.1038/s41598-017-03174-1  0.4
2016 He Z, Zhang H, Gao S, Lercher MJ, Chen WH, Hu S. Evolview v2: an online visualization and management tool for customized and annotated phylogenetic trees. Nucleic Acids Research. PMID 27131786 DOI: 10.1093/nar/gkw370  0.56
2016 Chen WH, Lu G, Bork P, Hu S, Lercher MJ. Energy efficiency trade-offs drive nucleotide usage in transcribed regions. Nature Communications. 7: 11334. PMID 27098217 DOI: 10.1038/ncomms11334  1
2016 Yanai I, Lercher MJ. Forty years of The Selfish Gene are not enough. Genome Biology. 17: 39. PMID 26936472 DOI: 10.1186/s13059-016-0910-7  0.52
2015 Dilthey A, Lercher MJ. Horizontally transferred genes cluster spatially and metabolically. Biology Direct. 10: 72. PMID 26690249 DOI: 10.1186/s13062-015-0102-5  1
2015 Desouki AA, Jarre F, Gelius-Dietrich G, Lercher MJ. CycleFreeFlux: efficient removal of thermodynamically infeasible loops from flux distributions. Bioinformatics (Oxford, England). PMID 25701569 DOI: 10.1093/bioinformatics/btv096  1
2015 Wittelsbürger U, Pfeifer B, Lercher MJ. WhopGenome: high-speed access to whole-genome variation and sequence data in R. Bioinformatics (Oxford, England). 31: 413-5. PMID 25273104 DOI: 10.1093/bioinformatics/btu636  1
2014 Mallmann J, Heckmann D, Bräutigam A, Lercher MJ, Weber AP, Westhoff P, Gowik U. The role of photorespiration during the evolution of C4 photosynthesis in the genus Flaveria. Elife. 3: e02478. PMID 24935935 DOI: 10.7554/eLife.02478  1
2014 Pfeifer B, Wittelsbürger U, Ramos-Onsins SE, Lercher MJ. PopGenome: an efficient Swiss army knife for population genomic analyses in R. Molecular Biology and Evolution. 31: 1929-36. PMID 24739305 DOI: 10.1093/molbev/msu136  1
2014 Engqvist MK, Eßer C, Maier A, Lercher MJ, Maurino VG. Mitochondrial 2-hydroxyglutarate metabolism. Mitochondrion. 19: 275-81. PMID 24561575 DOI: 10.1016/j.mito.2014.02.009  1
2014 Esser C, Kuhn A, Groth G, Lercher MJ, Maurino VG. Plant and animal glycolate oxidases have a common eukaryotic ancestor and convergently duplicated to evolve long-chain 2-hydroxy acid oxidases. Molecular Biology and Evolution. 31: 1089-101. PMID 24408912 DOI: 10.1093/molbev/msu041  1
2014 Schönknecht G, Weber AP, Lercher MJ. Horizontal gene acquisitions by eukaryotes as drivers of adaptive evolution. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 36: 9-20. PMID 24323918 DOI: 10.1002/bies.201300095  1
2013 Gelius-Dietrich G, Desouki AA, Fritzemeier CJ, Lercher MJ. Sybil--efficient constraint-based modelling in R. Bmc Systems Biology. 7: 125. PMID 24224957 DOI: 10.1186/1752-0509-7-125  1
2013 Heckmann D, Schulze S, Denton A, Gowik U, Westhoff P, Weber AP, Lercher MJ. Predicting C4 photosynthesis evolution: modular, individually adaptive steps on a Mount Fuji fitness landscape. Cell. 153: 1579-88. PMID 23791184 DOI: 10.1016/j.cell.2013.04.058  1
2013 Schönknecht G, Chen WH, Ternes CM, Barbier GG, Shrestha RP, Stanke M, Bräutigam A, Baker BJ, Banfield JF, Garavito RM, Carr K, Wilkerson C, Rensing SA, Gagneul D, Dickenson NE, ... ... Lercher MJ, et al. Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote. Science (New York, N.Y.). 339: 1207-10. PMID 23471408 DOI: 10.1126/science.1231707  1
2012 Zhang H, Gao S, Lercher MJ, Hu S, Chen WH. EvolView, an online tool for visualizing, annotating and managing phylogenetic trees. Nucleic Acids Research. 40: W569-72. PMID 22695796 DOI: 10.1093/nar/gks576  1
2012 Laubach T, von Haeseler A, Lercher MJ. TreeSnatcher plus: capturing phylogenetic trees from images. Bmc Bioinformatics. 13: 110. PMID 22624611 DOI: 10.1186/1471-2105-13-110  1
2012 Chen WH, Trachana K, Lercher MJ, Bork P. Younger genes are less likely to be essential than older genes, and duplicates are less likely to be essential than singletons of the same age. Molecular Biology and Evolution. 29: 1703-6. PMID 22319151 DOI: 10.1093/molbev/mss014  1
2012 Grassi L, Caselle M, Lercher MJ, Lagomarsino MC. Horizontal gene transfers as metagenomic gene duplications. Molecular Biosystems. 8: 790-5. PMID 22218456 DOI: 10.1039/c2mb05330f  1
2012 Chen WH, Minguez P, Lercher MJ, Bork P. OGEE: an online gene essentiality database. Nucleic Acids Research. 40: D901-6. PMID 22075992 DOI: 10.1093/nar/gkr986  1
2011 Wang GZ, Chen WH, Lercher MJ. Coexpression of linked gene pairs persists long after their separation. Genome Biology and Evolution. 3: 565-70. PMID 21737396 DOI: 10.1093/gbe/evr049  1
2011 Chen WH, Wei W, Lercher MJ. Minimal regulatory spaces in yeast genomes. Bmc Genomics. 12: 320. PMID 21679449 DOI: 10.1186/1471-2164-12-320  1
2011 Szappanos B, Kovács K, Szamecz B, Honti F, Costanzo M, Baryshnikova A, Gelius-Dietrich G, Lercher MJ, Jelasity M, Myers CL, Andrews BJ, Boone C, Oliver SG, Pál C, Papp B. An integrated approach to characterize genetic interaction networks in yeast metabolism. Nature Genetics. 43: 656-62. PMID 21623372 DOI: 10.1038/ng.846  1
2011 Wang GZ, Lercher MJ. The effects of network neighbours on protein evolution. Plos One. 6: e18288. PMID 21532755 DOI: 10.1371/journal.pone.0018288  1
2011 Wang GZ, Liu J, Wang W, Zhang HY, Lercher MJ. A gene's ability to buffer variation is predicted by its fitness contribution and genetic interactions. Plos One. 6: e17650. PMID 21407817 DOI: 10.1371/journal.pone.0017650  1
2011 Wang GZ, Lercher MJ, Hurst LD. Transcriptional coupling of neighboring genes and gene expression noise: evidence that gene orientation and noncoding transcripts are modulators of noise. Genome Biology and Evolution. 3: 320-31. PMID 21402863 DOI: 10.1093/gbe/evr025  1
2011 Bräutigam A, Kajala K, Wullenweber J, Sommer M, Gagneul D, Weber KL, Carr KM, Gowik U, Mass J, Lercher MJ, Westhoff P, Hibberd JM, Weber AP. An mRNA blueprint for C4 photosynthesis derived from comparative transcriptomics of closely related C3 and C4 species. Plant Physiology. 155: 142-56. PMID 20543093 DOI: 10.1104/pp.110.159442  1
2010 Hao L, Ge X, Wan H, Hu S, Lercher MJ, Yu J, Chen WH. Human functional genetic studies are biased against the medically most relevant primate-specific genes. Bmc Evolutionary Biology. 10: 316. PMID 20961448 DOI: 10.1186/1471-2148-10-316  1
2010 Wang GZ, Lercher MJ. Amino acid composition in endothermic vertebrates is biased in the same direction as in thermophilic prokaryotes. Bmc Evolutionary Biology. 10: 263. PMID 20807394 DOI: 10.1186/1471-2148-10-263  1
2010 He F, Chen WH, Collins S, Acquisti C, Goebel U, Ramos-Onsins S, Lercher MJ, de Meaux J. Assessing the influence of adjacent gene orientation on the evolution of gene upstream regions in Arabidopsis thaliana. Genetics. 185: 695-701. PMID 20233855 DOI: 10.1534/genetics.110.114629  1
2010 Chen WH, de Meaux J, Lercher MJ. Co-expression of neighbouring genes in Arabidopsis: separating chromatin effects from direct interactions. Bmc Genomics. 11: 178. PMID 20233415 DOI: 10.1186/1471-2164-11-178  1
2010 Weiss M, Schrimpf S, Hengartner MO, Lercher MJ, von Mering C. Shotgun proteomics data from multiple organisms reveals remarkable quantitative conservation of the eukaryotic core proteome. Proteomics. 10: 1297-306. PMID 20077411 DOI: 10.1002/pmic.200900414  1
2009 Warnecke T, Wang GZ, Lercher MJ, Hurst LD. Does negative auto-regulation increase gene duplicability? Bmc Evolutionary Biology. 9: 193. PMID 19664220 DOI: 10.1186/1471-2148-9-193  1
2009 Chen WH, Lercher MJ. ColorTree: a batch customization tool for phylogenic trees. Bmc Research Notes. 2: 155. PMID 19646243 DOI: 10.1186/1756-0500-2-155  1
2009 Schrimpf SP, Weiss M, Reiter L, Ahrens CH, Jovanovic M, Malmström J, Brunner E, Mohanty S, Lercher MJ, Hunziker PE, Aebersold R, von Mering C, Hengartner MO. Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes. Plos Biology. 7: e48. PMID 19260763 DOI: 10.1371/journal.pbio.1000048  1
2008 Lercher MJ, Pál C. Integration of horizontally transferred genes into regulatory interaction networks takes many million years. Molecular Biology and Evolution. 25: 559-67. PMID 18158322 DOI: 10.1093/molbev/msm283  1
2007 Raes J, Korbel JO, Lercher MJ, von Mering C, Bork P. Prediction of effective genome size in metagenomic samples. Genome Biology. 8: R10. PMID 17224063 DOI: 10.1186/gb-2007-8-1-r10  1
2006 Savard J, Tautz D, Richards S, Weinstock GM, Gibbs RA, Werren JH, Tettelin H, Lercher MJ. Phylogenomic analysis reveals bees and wasps (Hymenoptera) at the base of the radiation of Holometabolous insects. Genome Research. 16: 1334-8. PMID 17065606 DOI: 10.1101/gr.5204306  1
2006 Lercher MJ, Hurst LD. Co-expressed yeast genes cluster over a long range but are not regularly spaced. Journal of Molecular Biology. 359: 825-31. PMID 16631793 DOI: 10.1016/j.jmb.2006.03.051  1
2006 Pál C, Papp B, Lercher MJ. An integrated view of protein evolution. Nature Reviews. Genetics. 7: 337-48. PMID 16619049 DOI: 10.1038/nrg1838  1
2006 Keightley PD, Lercher MJ, Eyre-Walker A. Understanding the degradation of hominid gene control. Plos Computational Biology. 2: e19; author reply e2. PMID 16604186 DOI: 10.1371/journal.pcbi.0020019  1
2006 Pál C, Papp B, Lercher MJ, Csermely P, Oliver SG, Hurst LD. Chance and necessity in the evolution of minimal metabolic networks. Nature. 440: 667-70. PMID 16572170 DOI: 10.1038/nature04568  1
2006 Legube G, McWeeney SK, Lercher MJ, Akhtar A. X-chromosome-wide profiling of MSL-1 distribution and dosage compensation in Drosophila. Genes & Development. 20: 871-83. PMID 16547175 DOI: 10.1101/gad.377506  1
2006 Yanai I, Korbel JO, Boue S, McWeeney SK, Bork P, Lercher MJ. Similar gene expression profiles do not imply similar tissue functions. Trends in Genetics : Tig. 22: 132-8. PMID 16480787 DOI: 10.1016/j.tig.2006.01.006  1
2006 Savard J, Tautz D, Lercher MJ. Genome-wide acceleration of protein evolution in flies (Diptera). Bmc Evolutionary Biology. 6: 7. PMID 16436210 DOI: 10.1186/1471-2148-6-7  1
2005 Pál C, Papp B, Lercher MJ. Adaptive evolution of bacterial metabolic networks by horizontal gene transfer. Nature Genetics. 37: 1372-5. PMID 16311593 DOI: 10.1038/ng1686  1
2005 Hurst LD, Lercher MJ. Unusual linkage patterns of ligands and their cognate receptors indicate a novel reason for non-random gene order in the human genome. Bmc Evolutionary Biology. 5: 62. PMID 16277660 DOI: 10.1186/1471-2148-5-62  1
2005 Pál C, Papp B, Lercher MJ. Horizontal gene transfer depends on gene content of the host. Bioinformatics (Oxford, England). 21: ii222-3. PMID 16204108 DOI: 10.1093/bioinformatics/bti1136  1
2005 Keightley PD, Lercher MJ, Eyre-Walker A. Evidence for widespread degradation of gene control regions in hominid genomes. Plos Biology. 3: e42. PMID 15678168 DOI: 10.1371/journal.pbio.0030042  1
2004 Webster MT, Smith NG, Lercher MJ, Ellegren H. Gene expression, synteny, and local similarity in human noncoding mutation rates. Molecular Biology and Evolution. 21: 1820-30. PMID 15175414 DOI: 10.1093/molbev/msh181  1
2004 Hurst LD, Pál C, Lercher MJ. The evolutionary dynamics of eukaryotic gene order. Nature Reviews. Genetics. 5: 299-310. PMID 15131653 DOI: 10.1038/nrg1319  1
2003 Lercher MJ, Hurst LD. Imprinted chromosomal regions of the human genome have unusually high recombination rates. Genetics. 165: 1629-32. PMID 14733198  1
2003 Lercher MJ, Urrutia AO, Pavlícek A, Hurst LD. A unification of mosaic structures in the human genome. Human Molecular Genetics. 12: 2411-5. PMID 12915446 DOI: 10.1093/hmg/ddg251  1
2003 Lercher MJ, Urrutia AO, Hurst LD. Evidence that the human X chromosome is enriched for male-specific but not female-specific genes. Molecular Biology and Evolution. 20: 1113-6. PMID 12777530 DOI: 10.1093/molbev/msg131  1
2003 Lercher MJ, Blumenthal T, Hurst LD. Coexpression of neighboring genes in Caenorhabditis elegans is mostly due to operons and duplicate genes. Genome Research. 13: 238-43. PMID 12566401 DOI: 10.1101/gr.553803  1
2002 Lercher MJ, Smith NG, Eyre-Walker A, Hurst LD. The evolution of isochores: evidence from SNP frequency distributions. Genetics. 162: 1805-10. PMID 12524350  1
2002 Lercher MJ, Hurst LD. Can mutation or fixation biases explain the allele frequency distribution of human single nucleotide polymorphisms (SNPs)? Gene. 300: 53-8. PMID 12468085 DOI: 10.1016/S0378-1119(02)01040-5  1
2002 Lercher MJ, Hurst LD. Human SNP variability and mutation rate are higher in regions of high recombination. Trends in Genetics : Tig. 18: 337-40. PMID 12127766 DOI: 10.1016/S0168-9525(02)02669-0  1
2002 Smith NG, Lercher MJ. Regional similarities in polymorphism in the human genome extend over many megabases. Trends in Genetics : Tig. 18: 281-3. PMID 12044348 DOI: 10.1016/S0168-9525(02)02659-8  1
2002 Lercher MJ, Urrutia AO, Hurst LD. Clustering of housekeeping genes provides a unified model of gene order in the human genome. Nature Genetics. 31: 180-3. PMID 11992122 DOI: 10.1038/ng887  1
2002 Wienhard K, Schmand M, Casey ME, Baker K, Bao J, Eriksson L, Jones WF, Knoess C, Lenox M, Lercher M, Luk P, Michel C, Reed JH, Richerzhagen N, Treffert J, et al. The ECAT HRRT: Performance and first clinical application of the new high resolution research tomograph Ieee Transactions On Nuclear Science. 49: 104-110. DOI: 10.1109/TNS.2002.998689  1
2001 Lercher MJ, Williams EJ, Hurst LD. Local similarity in evolutionary rates extends over whole chromosomes in human-rodent and mouse-rat comparisons: implications for understanding the mechanistic basis of the male mutation bias. Molecular Biology and Evolution. 18: 2032-9. PMID 11606699  1
2001 Jacobs A, Voges J, Reszka R, Lercher M, Gossmann A, Kracht L, Kaestle C, Wagner R, Wienhard K, Heiss WD. Positron-emission tomography of vector-mediated gene expression in gene therapy for gliomas. Lancet (London, England). 358: 727-9. PMID 11551583 DOI: 10.1016/S0140-6736(01)05904-9  1
2001 Herholz K, Lercher M, Wienhard K, Bauer B, Lenz O, Heiss WD. PET measurement of cerebral acetylcholine esterase activity without blood sampling. European Journal of Nuclear Medicine. 28: 472-7. PMID 11357497 DOI: 10.1007/s002590100492  1
2001 Jacobs A, Bräunlich I, Graf R, Lercher M, Sakaki T, Voges J, Hesselmann V, Brandau W, Wienhard K, Heiss WD. Quantitative kinetics of [124I]FIAU in cat and man. Journal of Nuclear Medicine : Official Publication, Society of Nuclear Medicine. 42: 467-75. PMID 11337525  1
2000 Vollmar S, Wienhard K, Lercher M, Knöss C, Michel C, Treffert J, Schmand M, Casey ME, Newport D, Luk P, Bao J, Nutt R, Heiss WD. BeeHive: Cluster reconstruction of 3-D PET data in a windows NT network using FORE Ieee Nuclear Science Symposium and Medical Imaging Conference. 2: 15/213-15/215.  1
2000 Michel C, Schmand M, Liu X, Sibomana M, Vollmar S, Knöss C, Lercher M, Watson C, Newport D, Casey M, Defrise M, Wienhard K, Heiss WD. Reconstruction strategies for the HRRT Ieee Nuclear Science Symposium and Medical Imaging Conference. 2: 15/207-15/212.  1
1994 Lercher MJ, Wienhard K. Scatter correction in 3-D PET. Ieee Transactions On Medical Imaging. 13: 649-57. PMID 18218543 DOI: 10.1109/42.363103  1
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