Bjorn Wallner - Publications


28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Keasar C, McGuffin LJ, Wallner B, Chopra G, Adhikari B, Bhattacharya D, Blake L, Bortot LO, Cao R, Dhanasekaran BK, Dimas I, Faccioli RA, Faraggi E, Ganzynkowicz R, Ghosh S, et al. An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12. Scientific Reports. 8: 9939. PMID 29967418 DOI: 10.1038/s41598-018-26812-8  1
2016 Basu S, Wallner B. DockQ: A Quality Measure for Protein-Protein Docking Models. Plos One. 11: e0161879. PMID 27560519 DOI: 10.1371/Journal.Pone.0161879  1
2016 Basu S, Wallner B. Finding correct protein-protein docking models using ProQDock. Bioinformatics (Oxford, England). 32: i262-i270. PMID 27307625 DOI: 10.1093/Bioinformatics/Btw257  1
2015 Helander S, Montecchio M, Pilstål R, Su Y, Kuruvilla J, Elvén M, Ziauddin JM, Anandapadamanaban M, Cristobal S, Lundström P, Sears RC, Wallner B, Sunnerhagen M. Pre-Anchoring of Pin1 to Unphosphorylated c-Myc in a Fuzzy Complex Regulates c-Myc Activity. Structure (London, England : 1993). 23: 2267-2279. PMID 26655473 DOI: 10.1016/J.Str.2015.10.010  1
2015 Bunkóczi G, Wallner B, Read RJ. Local error estimates dramatically improve the utility of homology models for solving crystal structures by molecular replacement. Structure (London, England : 1993). 23: 397-406. PMID 25619999 DOI: 10.1016/J.Str.2014.11.020  1
2015 Tu WB, Helander S, Pilstål R, Hickman KA, Lourenco C, Jurisica I, Raught B, Wallner B, Sunnerhagen M, Penn LZ. Myc and its interactors take shape. Biochimica Et Biophysica Acta. 1849: 469-483. PMID 24933113 DOI: 10.1016/J.Bbagrm.2014.06.002  1
2014 Virkki MT, Peters C, Nilsson D, Sörensen T, Cristobal S, Wallner B, Elofsson A. The positive inside rule is stronger when followed by a transmembrane helix. Journal of Molecular Biology. 426: 2982-91. PMID 24927974 DOI: 10.1016/J.Jmb.2014.06.002  1
2014 Wallner B. ProQM-resample: improved model quality assessment for membrane proteins by limited conformational sampling. Bioinformatics (Oxford, England). 30: 2221-3. PMID 24713439 DOI: 10.1093/Bioinformatics/Btu187  1
2013 Bañó-Polo M, Martínez-Gil L, Wallner B, Nieva JL, Elofsson A, Mingarro I. Charge pair interactions in transmembrane helices and turn propensity of the connecting sequence promote helical hairpin insertion. Journal of Molecular Biology. 425: 830-40. PMID 23228331 DOI: 10.1016/J.Jmb.2012.12.001  1
2012 Schwaiger CS, Börjesson SI, Hess B, Wallner B, Elinder F, Lindahl E. The free energy barrier for arginine gating charge translation is altered by mutations in the voltage sensor domain. Plos One. 7: e45880. PMID 23094020 DOI: 10.1371/Journal.Pone.0045880  1
2012 Ray A, Lindahl E, Wallner B. Improved model quality assessment using ProQ2. Bmc Bioinformatics. 13: 224. PMID 22963006 DOI: 10.1186/1471-2105-13-224  1
2012 Henrion U, Renhorn J, Börjesson SI, Nelson EM, Schwaiger CS, Bjelkmar P, Wallner B, Lindahl E, Elinder F. Tracking a complete voltage-sensor cycle with metal-ion bridges. Proceedings of the National Academy of Sciences of the United States of America. 109: 8552-7. PMID 22538811 DOI: 10.1073/Pnas.1116938109  1
2011 Murail S, Wallner B, Trudell JR, Bertaccini E, Lindahl E. Microsecond simulations indicate that ethanol binds between subunits and could stabilize an open-state model of a glycine receptor. Biophysical Journal. 100: 1642-50. PMID 21463577 DOI: 10.1016/J.Bpj.2011.02.032  1
2011 Larsson P, Skwark MJ, Wallner B, Elofsson A. Improved predictions by using multiple templates. Bioinformatics (Oxford, England). 27: 426-7. PMID 21149277 DOI: 10.1093/Bioinformatics/Btq664  1
2010 Bertaccini EJ, Wallner B, Trudell JR, Lindahl E. Modeling anesthetic binding sites within the glycine alpha one receptor based on prokaryotic ion channel templates: the problem with TM4. Journal of Chemical Information and Modeling. 50: 2248-55. PMID 21117677 DOI: 10.1021/Ci100266C  1
2010 Ray A, Lindahl E, Wallner B. Model quality assessment for membrane proteins. Bioinformatics (Oxford, England). 26: 3067-74. PMID 20947525 DOI: 10.1093/Bioinformatics/Btq581  1
2009 Larsson P, Skwark MJ, Wallner B, Elofsson A. Assessment of global and local model quality in CASP8 using Pcons and ProQ. Proteins. 77: 167-72. PMID 19544566 DOI: 10.1002/Prot.22476  1
2009 Barth P, Wallner B, Baker D. Prediction of membrane protein structures with complex topologies using limited constraints. Proceedings of the National Academy of Sciences of the United States of America. 106: 1409-14. PMID 19190187 DOI: 10.1073/Pnas.0808323106  1
2008 Larsson P, Wallner B, Lindahl E, Elofsson A. Using multiple templates to improve quality of homology models in automated homology modeling. Protein Science : a Publication of the Protein Society. 17: 990-1002. PMID 18441233 DOI: 10.1110/Ps.073344908  1
2008 Wallner B, Elofsson A. Quality Assessment of Protein Models Prediction of Protein Structures, Functions, and Interactions. 143-157. DOI: 10.1002/9780470741894.ch6  1
2006 Wallner B, Elofsson A. Identification of correct regions in protein models using structural, alignment, and consensus information. Protein Science : a Publication of the Protein Society. 15: 900-13. PMID 16522791 DOI: 10.1110/Ps.051799606  1
2005 Wallner B, Elofsson A. Pcons5: combining consensus, structural evaluation and fold recognition scores. Bioinformatics (Oxford, England). 21: 4248-54. PMID 16204344 DOI: 10.1093/Bioinformatics/Bti702  1
2005 Berglund AC, Wallner B, Elofsson A, Liberles DA. Tertiary windowing to detect positive diversifying selection. Journal of Molecular Evolution. 60: 499-504. PMID 15883884 DOI: 10.1007/S00239-004-0223-4  1
2005 Wallner B, Elofsson A. All are not equal: a benchmark of different homology modeling programs. Protein Science : a Publication of the Protein Society. 14: 1315-27. PMID 15840834 DOI: 10.1110/Ps.041253405  1
2004 Ohlson T, Wallner B, Elofsson A. Profile-profile methods provide improved fold-recognition: a study of different profile-profile alignment methods. Proteins. 57: 188-97. PMID 15326603 DOI: 10.1002/Prot.20184  1
2004 Wallner B, Fang H, Ohlson T, Frey-Skött J, Elofsson A. Using evolutionary information for the query and target improves fold recognition. Proteins. 54: 342-50. PMID 14696196 DOI: 10.1002/Prot.10565  1
2003 Wallner B, Fang H, Elofsson A. Automatic consensus-based fold recognition using Pcons, ProQ, and Pmodeller. Proteins. 53: 534-41. PMID 14579343 DOI: 10.1002/Prot.10536  1
2003 Wallner B, Elofsson A. Can correct protein models be identified? Protein Science : a Publication of the Protein Society. 12: 1073-86. PMID 12717029 DOI: 10.1110/Ps.0236803  1
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