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Viktor Stolc - Publications

Affiliations: 
NASA Ames Research Center, Mountain View, CA, United States 
Area:
Genomics & Analytics
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28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2014 Amariei C, Machné R, Stolc V, Soga T, Tomita M, Murray DB. Time resolved DNA occupancy dynamics during the respiratory oscillation uncover a global reset point in the yeast growth program. Microbial Cell (Graz, Austria). 1: 279-288. PMID 28357254 DOI: 10.15698/Mic2014.09.166  0.321
2012 Zargar K, Conrad A, Bernick DL, Lowe TM, Stolc V, Hoeft S, Oremland RS, Stolz J, Saltikov CW. ArxA, a new clade of arsenite oxidase within the DMSO reductase family of molybdenum oxidoreductases. Environmental Microbiology. 14: 1635-45. PMID 22404962 DOI: 10.1111/J.1462-2920.2012.02722.X  0.34
2011 Stolc V, Shmygelska A, Griko Y. Adaptation of organisms by resonance of RNA transcription with the cellular redox cycle. Plos One. 6: e25270. PMID 21980411 DOI: 10.1371/Journal.Pone.0025270  0.379
2008 Li L, He H, Zhang J, Wang X, Bai S, Stolc V, Tongprasit W, Young ND, Yu O, Deng XW. Transcriptional analysis of highly syntenic regions between Medicago truncatula and Glycine max using tiling microarrays. Genome Biology. 9: R57. PMID 18348734 DOI: 10.1186/Gb-2008-9-3-R57  0.345
2008 Li X, Wang X, He K, Ma Y, Su N, He H, Stolc V, Tongprasit W, Jin W, Jiang J, Terzaghi W, Li S, Deng XW. High-resolution mapping of epigenetic modifications of the rice genome uncovers interplay between DNA methylation, histone methylation, and gene expression. The Plant Cell. 20: 259-76. PMID 18263775 DOI: 10.1105/Tpc.107.056879  0.331
2007 Samanta MP, Tongprasit W, Stolc V. In-depth query of large genomes using tiling arrays. Methods in Molecular Biology (Clifton, N.J.). 377: 163-74. PMID 17634616 DOI: 10.1007/978-1-59745-390-5_10  0.424
2007 Nelson DC, Wohlbach DJ, Rodesch MJ, Stolc V, Sussman MR, Samanta MP. Identification of an in vitro transcription-based artifact affecting oligonucleotide microarrays. Febs Letters. 581: 3363-70. PMID 17604026 DOI: 10.1016/J.Febslet.2007.06.033  0.409
2007 Euskirchen GM, Rozowsky JS, Wei CL, Lee WH, Zhang ZD, Hartman S, Emanuelsson O, Stolc V, Weissman S, Gerstein MB, Ruan Y, Snyder M. Mapping of transcription factor binding regions in mammalian cells by ChIP: comparison of array- and sequencing-based technologies. Genome Research. 17: 898-909. PMID 17568005 DOI: 10.1101/Gr.5583007  0.326
2007 Li L, Wang X, Sasidharan R, Stolc V, Deng W, He H, Korbel J, Chen X, Tongprasit W, Ronald P, Chen R, Gerstein M, Deng XW. Global identification and characterization of transcriptionally active regions in the rice genome Plos One. 2. PMID 17372628 DOI: 10.1371/Journal.Pone.0000294  0.483
2007 Lee J, He K, Stolc V, Lee H, Figueroa P, Gao Y, Tongprasit W, Zhao H, Lee I, Deng XW. Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development. The Plant Cell. 19: 731-49. PMID 17337630 DOI: 10.1105/Tpc.106.047688  0.366
2007 Sandmann T, Girardot C, Brehme M, Tongprasit W, Stolc V, Furlong EE. A core transcriptional network for early mesoderm development in Drosophila melanogaster. Genes & Development. 21: 436-49. PMID 17322403 DOI: 10.1101/Gad.1509007  0.334
2007 Emanuelsson O, Nagalakshmi U, Zheng D, Rozowsky JS, Urban AE, Du J, Lian Z, Stolc V, Weissman S, Snyder M, Gerstein MB. Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome. Genome Research. 17: 886-97. PMID 17119069 DOI: 10.1101/Gr.5014606  0.429
2006 Samanta MP, Tongprasit W, Istrail S, Cameron RA, Tu Q, Davidson EH, Stolc V. The transcriptome of the sea urchin embryo. Science (New York, N.Y.). 314: 960-2. PMID 17095694 DOI: 10.1126/Science.1131898  0.456
2006 Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, ... ... Stolc V, et al. The genome of the sea urchin Strongylocentrotus purpuratus. Science (New York, N.Y.). 314: 941-52. PMID 17095691 DOI: 10.1126/Science.1133609  0.413
2006 Samanta MP, Tongprasit W, Sethi H, Chin CS, Stolc V. Global identification of noncoding RNAs in Saccharomyces cerevisiae by modulating an essential RNA processing pathway. Proceedings of the National Academy of Sciences of the United States of America. 103: 4192-7. PMID 16537507 DOI: 10.1073/Pnas.0507669103  0.452
2006 Li L, Wang X, Stolc V, Li X, Zhang D, Su N, Tongprasit W, Li S, Cheng Z, Wang J, Deng XW. Genome-wide transcription analyses in rice using tiling microarrays. Nature Genetics. 38: 124-9. PMID 16369532 DOI: 10.1038/Ng1704  0.475
2005 Stolc V, Li L, Wang X, Li X, Su N, Tongprasit W, Han B, Xue Y, Li J, Snyder M, Gerstein M, Wang J, Deng XW. A pilot study of transcription unit analysis in rice using oligonucleotide tiling-path microarray. Plant Molecular Biology. 59: 137-49. PMID 16217608 DOI: 10.1007/S11103-005-6164-5  0.476
2005 Royce TE, Rozowsky JS, Bertone P, Samanta M, Stolc V, Weissman S, Snyder M, Gerstein M. Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping. Trends in Genetics : Tig. 21: 466-75. PMID 15979196 DOI: 10.1016/J.Tig.2005.06.007  0.41
2005 Li L, Wang X, Xia M, Stolc V, Su N, Peng Z, Li S, Wang J, Wang X, Deng XW. Tiling microarray analysis of rice chromosome 10 to identify the transcriptome and relate its expression to chromosomal architecture. Genome Biology. 6: R52. PMID 15960804 DOI: 10.1186/Gb-2005-6-6-R52  0.432
2005 Stolc V, Samanta MP, Tongprasit W, Sethi H, Liang S, Nelson DC, Hegeman A, Nelson C, Rancour D, Bednarek S, Ulrich EL, Zhao Q, Wrobel RL, Newman CS, Fox BG, et al. Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arrays. Proceedings of the National Academy of Sciences of the United States of America. 102: 4453-8. PMID 15755812 DOI: 10.1073/Pnas.0408203102  0.487
2005 Stolc V, Samanta MP, Tongprasit W, Marshall WF. Genome-wide transcriptional analysis of flagellar regeneration in Chlamydomonas reinhardtii identifies orthologs of ciliary disease genes. Proceedings of the National Academy of Sciences of the United States of America. 102: 3703-7. PMID 15738400 DOI: 10.1073/Pnas.0408358102  0.482
2004 Bertone P, Stolc V, Royce TE, Rozowsky JS, Urban AE, Zhu X, Rinn JL, Tongprasit W, Samanta M, Weissman S, Gerstein M, Snyder M. Global identification of human transcribed sequences with genome tiling arrays. Science (New York, N.Y.). 306: 2242-6. PMID 15539566 DOI: 10.1126/Science.1103388  0.476
2004 Stolc V, Gauhar Z, Mason C, Halasz G, van Batenburg MF, Rifkin SA, Hua S, Herreman T, Tongprasit W, Barbano PE, Bussemaker HJ, White KP. A gene expression map for the euchromatic genome of Drosophila melanogaster. Science (New York, N.Y.). 306: 655-60. PMID 15499012 DOI: 10.1126/Science.1101312  0.47
2004 Eason RG, Pourmand N, Tongprasit W, Herman ZS, Anthony K, Jejelowo O, Davis RW, Stolc V. Characterization of synthetic DNA bar codes in Saccharomyces cerevisiae gene-deletion strains. Proceedings of the National Academy of Sciences of the United States of America. 101: 11046-51. PMID 15258289 DOI: 10.1073/Pnas.0403672101  0.38
2003 Dunn W, Chou C, Li H, Hai R, Patterson D, Stolc V, Zhu H, Liu F. Functional profiling of a human cytomegalovirus genome. Proceedings of the National Academy of Sciences of the United States of America. 100: 14223-8. PMID 14623981 DOI: 10.1073/Pnas.2334032100  0.332
1998 Stolc V, Katz A, Altman S. Rpp2, an essential protein subunit of nuclear RNase P, is required for processing of precursor tRNAs and 35S precursor rRNA in Saccharomyces cerevisiae Proceedings of the National Academy of Sciences of the United States of America. 95: 6716-6721. PMID 9618478 DOI: 10.1073/Pnas.95.12.6716  0.556
1997 Stolc V, Altman S. Rpp1, an essential protein subunit of nuclear RNase P required for processing of precursor tRNA and 35S precursor rRNA in Saccharomyces cerevisiae Genes & Development. 11: 2926-2937. PMID 9353260 DOI: 10.1101/Gad.11.21.2926  0.55
1997 Eder PS, Kekuda R, Stolc V, Altman S. Characterization of two scleroderma autoimmune antigens that copurify with human ribonuclease P Proceedings of the National Academy of Sciences of the United States of America. 94: 1101-1106. PMID 9037013 DOI: 10.1073/Pnas.94.4.1101  0.517
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