Michael Snyder - Publications

Affiliations: 
Stanford University, Palo Alto, CA 
 Molecular, Cellular and Developmental Biology Yale University, New Haven, CT 
Area:
genomics, proteomics
Website:
http://snyderlab.stanford.edu/

192 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Jiang C, Wang X, Li X, Inlora J, Wang T, Liu Q, Snyder M. Dynamic Human Environmental Exposome Revealed by Longitudinal Personal Monitoring. Cell. 175: 277-291.e31. PMID 30241608 DOI: 10.1016/j.cell.2018.08.060  1
2018 Liu Q, Van Bortle K, Zhang Y, Zhao MT, Zhang JZ, Geller BS, Gruber JJ, Jiang C, Wu JC, Snyder MP. Disruption of mesoderm formation during cardiac differentiation due to developmental exposure to 13-cis-retinoic acid. Scientific Reports. 8: 12960. PMID 30154523 DOI: 10.1038/s41598-018-31192-0  0.48
2018 Yu KH, Lee TM, Chen YJ, Ré C, Kou SC, Chiang JH, Snyder M, Kohane IS. A Cloud-Based Metabolite and Chemical Prioritization System for the Biology/Disease-driven Human Proteome Project. Journal of Proteome Research. PMID 30094994 DOI: 10.1021/acs.jproteome.8b00378  0.36
2018 Li J, Hong X, Mesiano S, Muglia LJ, Wang X, Snyder M, Stevenson DK, Shaw GM. Natural Selection Has Differentiated the Progesterone Receptor among Human Populations. American Journal of Human Genetics. PMID 29937092 DOI: 10.1016/j.ajhg.2018.05.009  0.48
2018 Im H, Rao V, Sridhar K, Bentley J, Mishra T, Chen R, Hall J, Graber A, Zhang Y, Li X, Mias GI, Snyder MP, Greenberg PL. Distinct transcriptomic and exomic abnormalities within myelodysplastic syndrome marrow cells. Leukemia & Lymphoma. 1-11. PMID 29616851 DOI: 10.1080/10428194.2018.1452210  1
2018 Yu KH, Lee TL, Wang CS, Chen YJ, Ré C, Kou SC, Chiang JH, Kohane IS, Snyder M. Systematic Protein Prioritization for Targeted Proteomics Studies through Literature Mining. Journal of Proteome Research. PMID 29505266 DOI: 10.1021/acs.jproteome.7b00772  0.36
2018 Lee J, Shao NY, Paik DT, Wu H, Guo H, Termglinchan V, Churko JM, Kim Y, Kitani T, Zhao MT, Zhang Y, Wilson KD, Karakikes I, Snyder MP, Wu JC. SETD7 Drives Cardiac Lineage Commitment through Stage-Specific Transcriptional Activation. Cell Stem Cell. 22: 428-444.e5. PMID 29499155 DOI: 10.1016/j.stem.2018.02.005  0.36
2018 Piening BD, Zhou W, Contrepois K, Röst H, Gu Urban GJ, Mishra T, Hanson BM, Bautista EJ, Leopold S, Yeh CY, Spakowicz D, Banerjee I, Chen C, Kukurba K, Perelman D, ... ... Snyder MP, et al. Integrative Personal Omics Profiles during Periods of Weight Gain and Loss. Cell Systems. PMID 29361466 DOI: 10.1016/j.cels.2017.12.013  0.6
2018 Rappoport N, Toung J, Hadley D, Wong RJ, Fujioka K, Reuter J, Abbott CW, Oh S, Hu D, Eng C, Huntsman S, Bodian DL, Niederhuber JE, Hong X, Zhang G, ... ... Snyder MP, et al. A genome-wide association study identifies only two ancestry specific variants associated with spontaneous preterm birth. Scientific Reports. 8: 226. PMID 29317701 DOI: 10.1038/s41598-017-18246-5  0.48
2017 Churko JM, Lee J, Ameen M, Gu M, Venkatasubramanian M, Diecke S, Sallam K, Im H, Wang G, Gold JD, Salomonis N, Snyder MP, Wu JC. Transcriptomic and epigenomic differences in human induced pluripotent stem cells generated from six reprogramming methods. Nature Biomedical Engineering. 1: 826-837. PMID 30263871 DOI: 10.1038/s41551-017-0141-6  0.36
2017 Carter AC, Chang HY, Church G, Dombkowski A, Ecker JR, Gil E, Giresi PG, Greely H, Greenleaf WJ, Hacohen N, He C, Hill D, Ko J, Kohane I, Kundaje A, ... ... Snyder MP, et al. Challenges and recommendations for epigenomics in precision health. Nature Biotechnology. 35: 1128-1132. PMID 29220033 DOI: 10.1038/nbt.4030  0.36
2017 Zhao MT, Chen H, Liu Q, Shao NY, Sayed N, Wo HT, Zhang JZ, Ong SG, Liu C, Kim Y, Yang H, Chour T, Ma H, Gutierrez NM, Karakikes I, ... ... Snyder MP, et al. Molecular and functional resemblance of differentiated cells derived from isogenic human iPSCs and SCNT-derived ESCs. Proceedings of the National Academy of Sciences of the United States of America. PMID 29203658 DOI: 10.1073/pnas.1708991114  0.48
2017 Yu KH, Berry GJ, Rubin DL, Ré C, Altman RB, Snyder M. Association of Omics Features with Histopathology Patterns in Lung Adenocarcinoma. Cell Systems. PMID 29153840 DOI: 10.1016/j.cels.2017.10.014  0.36
2017 Sailani MR, Chappell J, Inlora J, Lynch L, Narasimha A, Mazroui S, Zia A, Bernstein J, Aryani O, Snyder MP. WISP3 mutation associated with Pseudorheumatoid Dysplasia. Cold Spring Harbor Molecular Case Studies. PMID 29092958 DOI: 10.1101/mcs.a001990  0.48
2017 Zhao M, Shao NY, Hu S, Ma N, Srinivasan R, Jahanbani F, Lee J, Zhang SL, Snyder MP, Wu JC. Cell Type-Specific Chromatin Signatures Underline Regulatory DNA Elements in Human Induced Pluripotent Stem Cells and Somatic Cells. Circulation Research. PMID 29030344 DOI: 10.1161/CIRCRESAHA.117.311367  0.36
2017 Yu KH, Fitzpatrick MR, Pappas L, Chan W, Kung J, Snyder M. Omics AnalySIs System for PRecision Oncology (OASISPRO): A Web-based Omics Analysis Tool for Clinical Phenotype Prediction. Bioinformatics (Oxford, England). PMID 28968749 DOI: 10.1093/bioinformatics/btx572  0.36
2017 Van Bortle K, Phanstiel DH, Snyder MP. Topological organization and dynamic regulation of human tRNA genes during macrophage differentiation. Genome Biology. 18: 180. PMID 28931413 DOI: 10.1186/s13059-017-1310-3  0.36
2017 Phanstiel DH, Van Bortle K, Spacek D, Hess GT, Shamim MS, Machol I, Love MI, Aiden EL, Bassik MC, Snyder MP. Static and Dynamic DNA Loops form AP-1-Bound Activation Hubs during Macrophage Development. Molecular Cell. PMID 28890333 DOI: 10.1016/j.molcel.2017.08.006  0.36
2017 Rubin AJ, Barajas BC, Furlan-Magaril M, Lopez-Pajares V, Mumbach MR, Howard I, Kim DS, Boxer LD, Cairns J, Spivakov M, Wingett SW, Shi M, Zhao Z, Greenleaf WJ, Kundaje A, ... Snyder M, et al. Lineage-specific dynamic and pre-established enhancer-promoter contacts cooperate in terminal differentiation. Nature Genetics. PMID 28805829 DOI: 10.1038/ng.3935  0.36
2017 Kuehn HS, Niemela JE, Sreedhara K, Stoddard JL, Grossman J, Wysocki CA, de la Morena MT, Garofalo M, Inlora J, Snyder MP, Lewis DB, Startakis CA, Fleisher TA, Rosenzweig SD. Novel nonsense gain-of-function NFKB2 mutations associated with a combined immunodeficiency phenotype. Blood. PMID 28778864 DOI: 10.1182/blood-2017-05-782177  0.48
2017 Liu Q, Jiang C, Xu J, Zhao M, Van Bortle K, Cheng X, Wang G, Chang HY, Wu JC, Snyder MP. Genome-Wide Temporal Profiling of Transcriptome and Open-Chromatin of Early Cardiomyocyte Differentiation Derived From hiPSCs and hESCs. Circulation Research. PMID 28663367 DOI: 10.1161/CIRCRESAHA.116.310456  0.48
2017 Inlora J, Sailani MR, Khodadadi H, Teymurinezhad A, Takahashi S, Bernstein JA, Garshasbi M, Snyder MP. Identification of a novel mutation in APTX gene associated with Ataxia-oculomotor apraxia. Cold Spring Harbor Molecular Case Studies. PMID 28652255 DOI: 10.1101/mcs.a002014  0.48
2017 Contrepois K, Coudereau C, Benayoun BA, Schuler N, Roux PF, Bischof O, Courbeyrette R, Carvalho C, Thuret JY, Ma Z, Derbois C, Nevers MC, Volland H, Redon CE, Bonner WM, ... ... Snyder MP, et al. Histone variant H2A.J accumulates in senescent cells and promotes inflammatory gene expression. Nature Communications. 8: 14995. PMID 28489069 DOI: 10.1038/ncomms14995  0.48
2017 Lal RA, Bachrach LK, Hoffman AR, Inlora J, Rego S, Snyder MP, Lewis DB. A Case Report of Hypoglycemia and Hypogammaglobulinemia: DAVID syndrome in a patient with a novel NFKB2 mutation. The Journal of Clinical Endocrinology and Metabolism. PMID 28472507 DOI: 10.1210/jc.2017-00341  0.48
2017 Yan KS, Janda CY, Chang J, Zheng GXY, Larkin KA, Luca VC, Chia LA, Mah AT, Han A, Terry JM, Ootani A, Roelf K, Lee M, Yuan J, Li X, ... ... Snyder MP, et al. Non-equivalence of Wnt and R-spondin ligands during Lgr5(+) intestinal stem-cell self-renewal. Nature. PMID 28467820 DOI: 10.1038/nature22313  1
2017 Chang J, Mancuso MR, Maier C, Liang X, Yuki K, Yang L, Kwong JW, Wang J, Rao V, Vallon M, Kosinski C, Zhang JJ, Mah AT, Xu L, Li L, ... ... Snyder M, et al. Gpr124 is essential for blood-brain barrier integrity in central nervous system disease. Nature Medicine. PMID 28288111 DOI: 10.1038/nm.4309  0.36
2017 Han L, Wu HJ, Zhu H, Kim KY, Marjani SL, Riester M, Euskirchen G, Zi X, Yang J, Han J, Snyder M, Park IH, Irizarry R, Weissman SM, Michor F, et al. Bisulfite-independent analysis of CpG island methylation enables genome-scale stratification of single cells. Nucleic Acids Research. PMID 28126923 DOI: 10.1093/nar/gkx026  0.4
2017 Li X, Dunn J, Salins D, Zhou G, Zhou W, Schüssler-Fiorenza Rose SM, Perelman D, Colbert E, Runge R, Rego S, Sonecha R, Datta S, McLaughlin T, Snyder MP. Digital Health: Tracking Physiomes and Activity Using Wearable Biosensors Reveals Useful Health-Related Information. Plos Biology. 15: e2001402. PMID 28081144 DOI: 10.1371/journal.pbio.2001402  1
2017 Tevlin R, Seo EY, Marecic O, McArdle A, Tong X, Zimdahl B, Malkovskiy A, Sinha R, Gulati G, Li X, Wearda T, Morganti R, Lopez M, Ransom RC, Duldulao CR, ... ... Snyder M, et al. Pharmacological rescue of diabetic skeletal stem cell niches. Science Translational Medicine. 9. PMID 28077677 DOI: 10.1126/scitranslmed.aag2809  1
2016 Li X, Snyder MP. Yeast longevity promoted by reversing aging-associated decline in heavy isotope content. Npj Aging and Mechanisms of Disease. 2: 16004. PMID 28721263 DOI: 10.1038/npjamd.2016.4  1
2016 Gu M, Shao NY, Sa S, Li D, Termglinchan V, Ameen M, Karakikes I, Sosa G, Grubert F, Lee J, Cao A, Taylor S, Ma Y, Zhao Z, Chappell J, ... ... Snyder MP, et al. Patient-Specific iPSC-Derived Endothelial Cells Uncover Pathways that Protect against Pulmonary Hypertension in BMPR2 Mutation Carriers. Cell Stem Cell. PMID 28017794 DOI: 10.1016/j.stem.2016.08.019  0.36
2016 Yang J, Tanaka Y, Seay M, Li Z, Jin J, Garmire LX, Zhu X, Taylor A, Li W, Euskirchen G, Halene S, Kluger Y, Snyder MP, Park IH, Pan X, et al. Single cell transcriptomics reveals unanticipated features of early hematopoietic precursors. Nucleic Acids Research. PMID 28003475 DOI: 10.1093/nar/gkw1214  0.68
2016 Yu KH, Hart SN, Goldfeder R, Zhang QC, Parker SC, Snyder M. HARNESSING BIG DATA FOR PRECISION MEDICINE: INFRASTRUCTURES AND APPLICATIONS. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 22: 635-639. PMID 27897013  0.36
2016 Sa S, Gu M, Chappell J, Shao NY, Ameen M, Elliott KA, Li D, Grubert F, Li CG, Taylor S, Cao A, Ma Y, Fong R, Nguyen L, Wu JC, ... Snyder MP, et al. iPSC Model of Pulmonary Arterial Hypertension Reveals Novel Gene Expression and Patient Specificity. American Journal of Respiratory and Critical Care Medicine. PMID 27779452 DOI: 10.1164/rccm.201606-1200OC  0.36
2016 Lefrançois P, Rockmill B, Xie P, Roeder GS, Snyder M. Multiple Pairwise Analysis of Non-homologous Centromere Coupling Reveals Preferential Chromosome Size-Dependent Interactions and a Role for Bouquet Formation in Establishing the Interaction Pattern. Plos Genetics. 12: e1006347. PMID 27768699 DOI: 10.1371/journal.pgen.1006347  0.32
2016 Kodo K, Ong SG, Jahanbani F, Termglinchan V, Hirono K, InanlooRahatloo K, Ebert AD, Shukla P, Abilez OJ, Churko JM, Karakikes I, Jung G, Ichida F, Wu SM, Snyder MP, et al. iPSC-derived cardiomyocytes reveal abnormal TGF-β signalling in left ventricular non-compaction cardiomyopathy. Nature Cell Biology. PMID 27642787 DOI: 10.1038/ncb3411  0.44
2016 Li G, Chen Y, Snyder MP, Zhang MQ. ChIA-PET2: a versatile and flexible pipeline for ChIA-PET data analysis. Nucleic Acids Research. PMID 27625391 DOI: 10.1093/nar/gkw809  0.56
2016 Li X, Snyder MP. Can heavy isotopes increase lifespan? Studies of relative abundance in various organisms reveal chemical perspectives on aging. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 27554342 DOI: 10.1002/bies.201600040  1
2016 Matsa E, Burridge PW, Yu KH, Ahrens JH, Termglinchan V, Wu H, Liu C, Shukla P, Sayed N, Churko JM, Shao N, Woo NA, Chao AS, Gold JD, Karakikes I, ... Snyder MP, et al. Transcriptome Profiling of Patient-Specific Human iPSC-Cardiomyocytes Predicts Individual Drug Safety and Efficacy Responses In Vitro. Cell Stem Cell. PMID 27545504 DOI: 10.1016/j.stem.2016.07.006  0.36
2016 Yu KH, Zhang C, Berry GJ, Altman RB, Ré C, Rubin DL, Snyder M. Predicting non-small cell lung cancer prognosis by fully automated microscopic pathology image features. Nature Communications. 7: 12474. PMID 27527408 DOI: 10.1038/ncomms12474  1
2016 Corces MR, Buenrostro JD, Wu B, Greenside PG, Chan SM, Koenig JL, Snyder MP, Pritchard JK, Kundaje A, Greenleaf WJ, Majeti R, Chang HY. Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution. Nature Genetics. PMID 27526324 DOI: 10.1038/ng.3646  1
2016 Martin-Almedina S, Martinez-Corral I, Holdhus R, Vicente A, Fotiou E, Lin S, Petersen K, Simpson MA, Hoischen A, Gilissen C, Jeffery H, Atton G, Karapouliou C, Brice G, Gordon K, ... ... Snyder MP, et al. EPHB4 kinase-inactivating mutations cause autosomal dominant lymphatic-related hydrops fetalis. The Journal of Clinical Investigation. PMID 27400125 DOI: 10.1172/JCI85794  1
2016 Hu S, Zhao MT, Jahanbani F, Shao NY, Lee WH, Chen H, Snyder MP, Wu JC. Effects of cellular origin on differentiation of human induced pluripotent stem cell-derived endothelial cells. Jci Insight. 1. PMID 27398408 DOI: 10.1172/jci.insight.85558  0.36
2016 Zhang H, Liu T, Zhang Z, Payne SH, Zhang B, McDermott JE, Zhou JY, Petyuk VA, Chen L, Ray D, Sun S, Yang F, Chen L, Wang J, Shah P, ... ... Snyder MP, et al. Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer. Cell. PMID 27372738 DOI: 10.1016/j.cell.2016.05.069  1
2016 Yu KH, Levine DA, Zhang H, Chan DW, Zhang Z, Snyder M. Predicting Ovarian Cancer Patients' Clinical Response to Platinum-based Chemotherapy by their Tumor Proteomic Signatures. Journal of Proteome Research. PMID 27312948 DOI: 10.1021/acs.jproteome.5b01129  1
2016 Kuleshov V, Snyder MP, Batzoglou S. Genome assembly from synthetic long read clouds. Bioinformatics (Oxford, England). 32: i216-i224. PMID 27307620 DOI: 10.1093/bioinformatics/btw267  1
2016 Datta S, Bettinger K, Snyder M. Secure cloud computing for genomic data. Nature Biotechnology. 34: 588-91. PMID 27281411 DOI: 10.1038/nbt.3496  1
2016 Arda HE, Li L, Tsai J, Torre EA, Rosli Y, Peiris H, Spitale RC, Dai C, Gu X, Qu K, Wang P, Wang J, Grompe M, Scharfmann R, Snyder MS, et al. Age-Dependent Pancreatic Gene Regulation Reveals Mechanisms Governing Human β Cell Function. Cell Metabolism. PMID 27133132 DOI: 10.1016/j.cmet.2016.04.002  0.36
2016 Li C, Gu L, Gao L, Chen C, Wei CQ, Qiu Q, Chien CW, Wang S, Jiang L, Ai LF, Chen CY, Yang S, Nguyen V, Qi Y, Snyder MP, et al. Concerted genomic targeting of H3K27 demethylase REF6 and chromatin-remodeling ATPase BRM in Arabidopsis. Nature Genetics. PMID 27111034 DOI: 10.1038/ng.3555  0.44
2016 Yu KH, Snyder M. Omics profiling in precision oncology. Molecular & Cellular Proteomics : McP. PMID 27099341 DOI: 10.1074/mcp.O116.059253  1
2016 Yu KH, Li J, Snyder M, Shaw GM, O'Brodovich HM. The genetic predisposition to bronchopulmonary dysplasia. Current Opinion in Pediatrics. PMID 26963946 DOI: 10.1097/MOP.0000000000000344  0.36
2016 Contrepois K, Liang L, Snyder M. Can Metabolic Profiles Be Used as a Phenotypic Readout of the Genome to Enhance Precision Medicine? Clinical Chemistry. PMID 26960666 DOI: 10.1373/clinchem.2015.251181  1
2016 Zhang Q, Zeng X, Younkin S, Kawli T, Snyder MP, Keleş S. Systematic evaluation of the impact of ChIP-seq read designs on genome coverage, peak identification, and allele-specific binding detection. Bmc Bioinformatics. 17: 96. PMID 26908256 DOI: 10.1186/s12859-016-0957-1  1
2016 Landegren N, Sharon D, Freyhult E, Hallgren Å, Eriksson D, Edqvist PH, Bensing S, Wahlberg J, Nelson LM, Gustafsson J, Husebye ES, Anderson MS, Snyder M, Kämpe O. Proteome-wide survey of the autoimmune target repertoire in autoimmune polyendocrine syndrome type 1. Scientific Reports. 6: 20104. PMID 26830021 DOI: 10.1038/srep20104  1
2015 Li J, Ma Z, Shi M, Malty RH, Aoki H, Minic Z, Phanse S, Jin K, Wall DP, Zhang Z, Urban AE, Hallmayer J, Babu M, Snyder M. Identification of Human Neuronal Protein Complexes Reveals Biochemical Activities and Convergent Mechanisms of Action in Autism Spectrum Disorders. Cell Systems. 1: 361-374. PMID 26949739 DOI: 10.1016/j.cels.2015.11.002  0.56
2015 Li X, Guo Y, Yan W, Snyder MP, Li X. Metformin Improves Diabetic Bone Health by Re-Balancing Catabolism and Nitrogen Disposal. Plos One. 10: e0146152. PMID 26716870 DOI: 10.1371/journal.pone.0146152  1
2015 Araya CL, Cenik C, Reuter JA, Kiss G, Pande VS, Snyder MP, Greenleaf WJ. Identification of significantly mutated regions across cancer types highlights a rich landscape of functional molecular alterations. Nature Genetics. PMID 26691984 DOI: 10.1038/ng.3471  0.44
2015 Kuleshov V, Jiang C, Zhou W, Jahanbani F, Batzoglou S, Snyder M. Synthetic long-read sequencing reveals intraspecies diversity in the human microbiome. Nature Biotechnology. PMID 26655498 DOI: 10.1038/nbt.3416  1
2015 Araya CL, Kawli T, Kundaje A, Jiang L, Wu B, Vafeados D, Terrell R, Weissdepp P, Gevirtzman L, Mace D, Niu W, Boyle AP, Xie D, Ma L, Murray JI, ... ... Snyder M, et al. Corrigendum: Regulatory analysis of the C. elegans genome with spatiotemporal resolution. Nature. PMID 26560031 DOI: 10.1038/nature16075  0.44
2015 Shoemaker LD, Clark MJ, Patwardhan A, Chandratillake G, Garcia S, Chen R, Morgan AA, Leng N, Kirk S, Chen R, Cook DJ, Snyder M, Steinberg GK. Disease Variant Landscape of a Large Multi-ethnic Population of Moyamoya Patients by Exome Sequencing. G3 (Bethesda, Md.). PMID 26530418 DOI: 10.1534/g3.115.020321  1
2015 Grubert F, Zaugg JB, Kasowski M, Ursu O, Spacek DV, Martin AR, Greenside P, Srivas R, Phanstiel DH, Pekowska A, Heidari N, Euskirchen G, Huber W, Pritchard JK, Bustamante CD, ... ... Snyder M, et al. Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions. Cell. PMID 26300125 DOI: 10.1016/j.cell.2015.07.048  1
2015 Cenik C, Sarinay Cenik E, Byeon GW, Grubert F, Candille SI, Spacek D, Alsallakh B, Tilgner H, Araya CL, Tang H, Ricci E, Snyder MP. Integrative analysis of RNA, translation and protein levels reveals distinct regulatory variation across humans. Genome Research. PMID 26297486 DOI: 10.1101/gr.193342.115  1
2015 Fasolo J, Im H, Snyder MP. Probing High-density Functional Protein Microarrays to Detect Protein-protein Interactions. Journal of Visualized Experiments : Jove. PMID 26274875 DOI: 10.3791/51872  1
2015 Patwardhan A, Harris J, Leng N, Bartha G, Church DM, Luo S, Haudenschild C, Pratt M, Zook J, Salit M, Tirch J, Morra M, Chervitz S, Li M, Clark M, ... ... Snyder M, et al. Achieving high-sensitivity for clinical applications using augmented exome sequencing. Genome Medicine. 7: 71. PMID 26269718 DOI: 10.1186/s13073-015-0197-4  1
2015 Marcobal A, Yusufaly T, Higginbottom S, Snyder M, Sonnenburg JL, Mias GI. Metabolome progression during early gut microbial colonization of gnotobiotic mice. Scientific Reports. 5: 11589. PMID 26118551 DOI: 10.1038/srep11589  0.88
2015 Buenrostro JD, Wu B, Litzenburger UM, Ruff D, Gonzales ML, Snyder MP, Chang HY, Greenleaf WJ. Single-cell chromatin accessibility reveals principles of regulatory variation. Nature. 523: 486-90. PMID 26083756 DOI: 10.1038/nature14590  0.36
2015 Li J, Yu KH, Oehlert J, Jeliffe-Pawlowski LL, Gould JB, Stevenson DK, Snyder M, Shaw GM, O'Brodovich HM. Exome Sequencing of Neonatal Blood Spots Identifies Genes Implicated in Bronchopulmonary Dysplasia. American Journal of Respiratory and Critical Care Medicine. PMID 26030808 DOI: 10.1164/rccm.201501-0168OC  0.36
2015 Rhodes CJ, Im H, Cao A, Hennigs JK, Wang L, Sa S, Chen PI, Nickel NP, Miyagawa K, Hopper RK, Tojais NF, Li CG, Gu M, Spiekerkoetter E, Xian Z, ... ... Snyder M, et al. RNAseq Reveals a Novel Pathway of Endothelial Dysfunction in Pulmonary Arterial Hypertension. American Journal of Respiratory and Critical Care Medicine. PMID 26030479 DOI: 10.1164/rccm.201408-1528OC  0.44
2015 Tombácz D, Csabai Z, Oláh P, Havelda Z, Sharon D, Snyder M, Boldogk?i Z. Characterization of novel transcripts in pseudorabies virus. Viruses. 7: 2727-44. PMID 26008709 DOI: 10.3390/v7052727  1
2015 Tanaka Y, Hysolli E, Su J, Xiang Y, Kim KY, Zhong M, Li Y, Heydari K, Euskirchen G, Snyder MP, Pan X, Weissman SM, Park IH. Transcriptome Signature and Regulation in Human Somatic Cell Reprogramming. Stem Cell Reports. 4: 1125-39. PMID 26004630 DOI: 10.1016/j.stemcr.2015.04.009  0.44
2015 Reuter JA, Spacek DV, Snyder MP. High-Throughput Sequencing Technologies. Molecular Cell. 58: 586-597. PMID 26000844 DOI: 10.1016/j.molcel.2015.05.004  1
2015 Tilgner H, Jahanbani F, Blauwkamp T, Moshrefi A, Jaeger E, Chen F, Harel I, Bustamante CD, Rasmussen M, Snyder MP. Comprehensive transcriptome analysis using synthetic long-read sequencing reveals molecular co-association of distant splicing events. Nature Biotechnology. PMID 25985263 DOI: 10.1038/nbt.3242  1
2015 Lin H, Chen M, Kundaje A, Valouev A, Yin H, Liu N, Neuenkirchen N, Zhong M, Snyder M. Reassessment of Piwi binding to the genome and Piwi impact on RNA polymerase II distribution. Developmental Cell. 32: 772-4. PMID 25805139 DOI: 10.1016/j.devcel.2015.03.004  0.44
2015 Contrepois K, Jiang L, Snyder M. Optimized Analytical Procedures for the Untargeted Metabolomic Profiling of Human Urine and Plasma by Combining Hydrophilic Interaction (HILIC) and Reverse-Phase Liquid Chromatography (RPLC)-Mass Spectrometry. Molecular & Cellular Proteomics : McP. 14: 1684-95. PMID 25787789 DOI: 10.1074/mcp.M114.046508  1
2015 Chen R, Im H, Snyder M. Whole-Exome Enrichment with the Roche NimbleGen SeqCap EZ Exome Library SR Platform. Cold Spring Harbor Protocols. 2015: pdb.prot084855. PMID 25762419 DOI: 10.1101/pdb.prot084855  1
2015 Chen R, Im H, Snyder M. Whole-Exome Enrichment with the Illumina TruSeq Exome Enrichment Platform. Cold Spring Harbor Protocols. 2015: pdb.prot084863. PMID 25762418 DOI: 10.1101/pdb.prot084863  1
2015 Chen R, Im H, Snyder M. Whole-Exome Enrichment with the Agilent SureSelect Human All Exon Platform. Cold Spring Harbor Protocols. 2015: pdb.prot083659. PMID 25762417 DOI: 10.1101/pdb.prot083659  1
2015 Wu L, Snyder M. Impact of allele-specific peptides in proteome quantification. Proteomics. Clinical Applications. 9: 432-6. PMID 25676416 DOI: 10.1002/prca.201400126  1
2015 Lardenois A, Stuparevic I, Liu Y, Law MJ, Becker E, Smagulova F, Waern K, Guilleux MH, Horecka J, Chu A, Kervarrec C, Strich R, Snyder M, Davis RW, Steinmetz LM, et al. The conserved histone deacetylase Rpd3 and its DNA binding subunit Ume6 control dynamic transcript architecture during mitotic growth and meiotic development. Nucleic Acids Research. 43: 115-28. PMID 25477386 DOI: 10.1093/nar/gku1185  1
2015 Xu L, Hazard FK, Zmoos AF, Jahchan N, Chaib H, Garfin PM, Rangaswami A, Snyder MP, Sage J. Genomic analysis of fibrolamellar hepatocellular carcinoma. Human Molecular Genetics. 24: 50-63. PMID 25122662 DOI: 10.1093/hmg/ddu418  1
2014 Haraksingh RR, Jahanbani F, Rodriguez-Paris J, Gelernter J, Nadeau KC, Oghalai JS, Schrijver I, Snyder MP. Exome sequencing and genome-wide copy number variant mapping reveal novel associations with sensorineural hereditary hearing loss. Bmc Genomics. 15: 1155. PMID 25528277 DOI: 10.1186/1471-2164-15-1155  1
2014 Lin S, Lin Y, Nery JR, Urich MA, Breschi A, Davis CA, Dobin A, Zaleski C, Beer MA, Chapman WC, Gingeras TR, Ecker JR, Snyder MP. Comparison of the transcriptional landscapes between human and mouse tissues. Proceedings of the National Academy of Sciences of the United States of America. 111: 17224-9. PMID 25413365 DOI: 10.1073/pnas.1413624111  1
2014 Pope BD, Ryba T, Dileep V, Yue F, Wu W, Denas O, Vera DL, Wang Y, Hansen RS, Canfield TK, Thurman RE, Cheng Y, Gülsoy G, Dennis JH, Snyder MP, et al. Topologically associating domains are stable units of replication-timing regulation. Nature. 515: 402-5. PMID 25409831 DOI: 10.1038/nature13986  0.44
2014 Cheng Y, Ma Z, Kim BH, Wu W, Cayting P, Boyle AP, Sundaram V, Xing X, Dogan N, Li J, Euskirchen G, Lin S, Lin Y, Visel A, Kawli T, ... ... Snyder MP, et al. Principles of regulatory information conservation between mouse and human. Nature. 515: 371-5. PMID 25409826 DOI: 10.1038/nature13985  1
2014 Sundaram V, Cheng Y, Ma Z, Li D, Xing X, Edge P, Snyder MP, Wang T. Widespread contribution of transposable elements to the innovation of gene regulatory networks. Genome Research. 24: 1963-76. PMID 25319995 DOI: 10.1101/gr.168872.113  0.48
2014 Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK, Ward LD, Birney E, Crawford GE, Dekker J, Dunham I, Elnitski LL, Farnham PJ, Feingold EA, Gerstein M, et al. Reply to Brunet and Doolittle: Both selected effect and causal role elements can influence human biology and disease. Proceedings of the National Academy of Sciences of the United States of America. 111: E3366. PMID 25275169 DOI: 10.1073/pnas.1410434111  0.44
2014 Heidari N, Phanstiel DH, He C, Grubert F, Jahanbani F, Kasowski M, Zhang MQ, Snyder MP. Genome-wide map of regulatory interactions in the human genome. Genome Research. 24: 1905-17. PMID 25228660 DOI: 10.1101/gr.176586.114  1
2014 Lefrançois P, Gallagher JE, Snyder M. Global analysis of transcription factor-binding sites in yeast using ChIP-Seq. Methods in Molecular Biology (Clifton, N.J.). 1205: 231-55. PMID 25213249 DOI: 10.1007/978-1-4939-1363-3_15  0.32
2014 Boyle AP, Araya CL, Brdlik C, Cayting P, Cheng C, Cheng Y, Gardner K, Hillier LW, Janette J, Jiang L, Kasper D, Kawli T, Kheradpour P, Kundaje A, Li JJ, ... ... Snyder M, et al. Comparative analysis of regulatory information and circuits across distant species. Nature. 512: 453-6. PMID 25164757 DOI: 10.1038/nature13668  1
2014 Araya CL, Kawli T, Kundaje A, Jiang L, Wu B, Vafeados D, Terrell R, Weissdepp P, Gevirtzman L, Mace D, Niu W, Boyle AP, Xie D, Ma L, Murray JI, ... ... Snyder M, et al. Regulatory analysis of the C. elegans genome with spatiotemporal resolution. Nature. 512: 400-5. PMID 25164749 DOI: 10.1038/nature13497  1
2014 Schrick K, Bruno M, Khosla A, Cox PN, Marlatt SA, Roque RA, Nguyen HC, He C, Snyder MP, Singh D, Yadav G. Shared functions of plant and mammalian StAR-related lipid transfer (START) domains in modulating transcription factor activity. Bmc Biology. 12: 70. PMID 25159688 DOI: 10.1186/s12915-014-0070-8  1
2014 Martin AR, Costa HA, Lappalainen T, Henn BM, Kidd JM, Yee MC, Grubert F, Cann HM, Snyder M, Montgomery SB, Bustamante CD. Transcriptome sequencing from diverse human populations reveals differentiated regulatory architecture. Plos Genetics. 10: e1004549. PMID 25121757 DOI: 10.1371/journal.pgen.1004549  1
2014 Benayoun BA, Pollina EA, Ucar D, Mahmoudi S, Karra K, Wong ED, Devarajan K, Daugherty AC, Kundaje AB, Mancini E, Hitz BC, Gupta R, Rando TA, Baker JC, Snyder MP, et al. H3K4me3 breadth is linked to cell identity and transcriptional consistency. Cell. 158: 673-88. PMID 25083876 DOI: 10.1016/j.cell.2014.06.027  0.44
2014 Sharon D, Snyder M. Serum profiling using protein microarrays to identify disease related antigens. Methods in Molecular Biology (Clifton, N.J.). 1176: 169-78. PMID 25030927 DOI: 10.1007/978-1-4939-0992-6_14  1
2014 Tilgner H, Grubert F, Sharon D, Snyder MP. Defining a personal, allele-specific, and single-molecule long-read transcriptome. Proceedings of the National Academy of Sciences of the United States of America. 111: 9869-74. PMID 24961374 DOI: 10.1073/pnas.1400447111  1
2014 Phanstiel DH, Boyle AP, Araya CL, Snyder MP. Sushi.R: flexible, quantitative and integrative genomic visualizations for publication-quality multi-panel figures. Bioinformatics (Oxford, England). 30: 2808-10. PMID 24903420 DOI: 10.1093/bioinformatics/btu379  1
2014 Kukurba KR, Zhang R, Li X, Smith KS, Knowles DA, How Tan M, Piskol R, Lek M, Snyder M, Macarthur DG, Li JB, Montgomery SB. Allelic expression of deleterious protein-coding variants across human tissues. Plos Genetics. 10: e1004304. PMID 24786518 DOI: 10.1371/journal.pgen.1004304  0.44
2014 Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK, Ward LD, Birney E, Crawford GE, Dekker J, Dunham I, Elnitski LL, Farnham PJ, Feingold EA, Gerstein M, et al. Defining functional DNA elements in the human genome. Proceedings of the National Academy of Sciences of the United States of America. 111: 6131-8. PMID 24753594 DOI: 10.1073/pnas.1318948111  0.44
2014 Buenrostro JD, Araya CL, Chircus LM, Layton CJ, Chang HY, Snyder MP, Greenleaf WJ. Quantitative analysis of RNA-protein interactions on a massively parallel array reveals biophysical and evolutionary landscapes. Nature Biotechnology. 32: 562-8. PMID 24727714 DOI: 10.1038/nbt.2880  0.44
2014 Canaan A, DeFuria J, Perelman E, Schultz V, Seay M, Tuck D, Flavell RA, Snyder MP, Obin MS, Weissman SM. Extended lifespan and reduced adiposity in mice lacking the FAT10 gene. Proceedings of the National Academy of Sciences of the United States of America. 111: 5313-8. PMID 24706839 DOI: 10.1073/pnas.1323426111  0.44
2014 Enns GM, Shashi V, Bainbridge M, Gambello MJ, Zahir FR, Bast T, Crimian R, Schoch K, Platt J, Cox R, Bernstein JA, Scavina M, Walter RS, Bibb A, Jones M, ... ... Snyder M, et al. Mutations in NGLY1 cause an inherited disorder of the endoplasmic reticulum-associated degradation pathway. Genetics in Medicine : Official Journal of the American College of Medical Genetics. 16: 751-8. PMID 24651605 DOI: 10.1038/gim.2014.22  1
2014 Dewey FE, Grove ME, Pan C, Goldstein BA, Bernstein JA, Chaib H, Merker JD, Goldfeder RL, Enns GM, David SP, Pakdaman N, Ormond KE, Caleshu C, Kingham K, Klein TE, ... ... Snyder M, et al. Clinical interpretation and implications of whole-genome sequencing. Jama. 311: 1035-45. PMID 24618965 DOI: 10.1001/jama.2014.1717  0.44
2014 Brdlik CM, Niu W, Snyder M. Chromatin immunoprecipitation and multiplex sequencing (ChIP-Seq) to identify global transcription factor binding sites in the nematode Caenorhabditis elegans. Methods in Enzymology. 539: 89-111. PMID 24581441 DOI: 10.1016/B978-0-12-420120-0.00007-4  1
2014 Gallagher JE, Zheng W, Rong X, Miranda N, Lin Z, Dunn B, Zhao H, Snyder MP. Divergence in a master variator generates distinct phenotypes and transcriptional responses. Genes & Development. 28: 409-21. PMID 24532717 DOI: 10.1101/gad.228940.113  1
2014 Karczewski KJ, Snyder M, Altman RB, Tatonetti NP. Coherent Functional Modules Improve Transcription Factor Target Identification, Cooperativity Prediction, and Disease Association Plos Genetics. 10. PMID 24516403 DOI: 10.1371/journal.pgen.1004122  0.44
2014 Kanai T, Seki S, Jenks JA, Kohli A, Kawli T, Martin DP, Snyder M, Bacchetta R, Nadeau KC. Identification of STAT5A and STAT5B target genes in human T cells. Plos One. 9: e86790. PMID 24497979 DOI: 10.1371/journal.pone.0086790  0.44
2014 Wan Y, Qu K, Zhang QC, Flynn RA, Manor O, Ouyang Z, Zhang J, Spitale RC, Snyder MP, Segal E, Chang HY. Landscape and variation of RNA secondary structure across the human transcriptome. Nature. 505: 706-9. PMID 24476892 DOI: 10.1038/nature12946  0.44
2014 Snyder M, Mias G, Stanberry L, Kolker E. Metadata checklist for the integrated personal OMICS study: proteomics and metabolomics experiments. Omics : a Journal of Integrative Biology. 18: 81-5. PMID 24456466 DOI: 10.1089/omi.2013.0148  0.44
2014 Karczewski KJ, Fernald GH, Martin AR, Snyder M, Tatonetti NP, Dudley JT. STORMSeq: an open-source, user-friendly pipeline for processing personal genomics data in the cloud. Plos One. 9: e84860. PMID 24454756 DOI: 10.1371/journal.pone.0084860  0.44
2014 Daneshjou R, Zappala Z, Kukurba K, Boyle SM, Ormond KE, Klein TE, Snyder M, Bustamante CD, Altman RB, Montgomery SB. PATH-SCAN: a reporting tool for identifying clinically actionable variants. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 229-40. PMID 24297550  0.44
2013 Mias GI, Snyder M. Personal genomes, quantitative dynamic omics and personalized medicine. Quantitative Biology. 1: 71-90. PMID 25798291 DOI: 10.1007/s40484-013-0005-3  0.88
2013 Stanberry L, Mias GI, Haynes W, Higdon R, Snyder M, Kolker E. Integrative analysis of longitudinal metabolomics data from a personal multi-omics profile. Metabolites. 3: 741-60. PMID 24958148 DOI: 10.3390/metabo3030741  0.88
2013 Mias GI, Chen R, Zhang Y, Sridhar K, Sharon D, Xiao L, Im H, Snyder MP, Greenberg PL. Specific plasma autoantibody reactivity in myelodysplastic syndromes. Scientific Reports. 3: 3311. PMID 24264604 DOI: 10.1038/srep03311  1
2013 Kasowski M, Kyriazopoulou-Panagiotopoulou S, Grubert F, Zaugg JB, Kundaje A, Liu Y, Boyle AP, Zhang QC, Zakharia F, Spacek DV, Li J, Xie D, Olarerin-George A, Steinmetz LM, Hogenesch JB, ... ... Snyder M, et al. Extensive variation in chromatin states across humans. Science (New York, N.Y.). 342: 750-2. PMID 24136358 DOI: 10.1126/science.1242510  0.44
2013 Franceschini N, Fox E, Zhang Z, Edwards TL, Nalls MA, Sung YJ, Tayo BO, Sun YV, Gottesman O, Adeyemo A, Johnson AD, Young JH, Rice K, Duan Q, Chen F, ... ... Snyder M, et al. Genome-wide association analysis of blood-pressure traits in African-ancestry individuals reveals common associated genes in African and non-African populations. American Journal of Human Genetics. 93: 545-54. PMID 23972371 DOI: 10.1016/j.ajhg.2013.07.010  0.44
2013 Haraksingh RR, Snyder MP. Impacts of variation in the human genome on gene regulation. Journal of Molecular Biology. 425: 3970-7. PMID 23871684 DOI: 10.1016/j.jmb.2013.07.015  1
2013 Chen R, Giliani S, Lanzi G, Mias GI, Lonardi S, Dobbs K, Manis J, Im H, Gallagher JE, Phanstiel DH, Euskirchen G, Lacroute P, Bettinger K, Moratto D, Weinacht K, ... ... Snyder M, et al. Whole-exome sequencing identifies tetratricopeptide repeat domain 7A (TTC7A) mutations for combined immunodeficiency with intestinal atresias. The Journal of Allergy and Clinical Immunology. 132: 656-664.e17. PMID 23830146 DOI: 10.1016/j.jaci.2013.06.013  1
2013 Wellensiek BP, Larsen AC, Stephens B, Kukurba K, Waern K, Briones N, Liu L, Snyder M, Jacobs BL, Kumar S, Chaput JC. Genome-wide profiling of human cap-independent translation-enhancing elements. Nature Methods. 10: 747-50. PMID 23770754 DOI: 10.1038/nmeth.2522  0.44
2013 Waern K, Snyder M. Extensive transcript diversity and novel upstream open reading frame regulation in yeast. G3 (Bethesda, Md.). 3: 343-52. PMID 23390610 DOI: 10.1534/g3.112.003640  1
2013 Lefrançois P, Auerbach RK, Yellman CM, Roeder GS, Snyder M. Centromere-like regions in the budding yeast genome. Plos Genetics. 9: e1003209. PMID 23349633 DOI: 10.1371/journal.pgen.1003209  1
2013 Mias GI, Snyder M. Multimodal dynamic profiling of healthy and diseased states for future personalized health care. Clinical Pharmacology and Therapeutics. 93: 29-32. PMID 23187877 DOI: 10.1038/clpt.2012.204  1
2012 Charos AE, Reed BD, Raha D, Szekely AM, Weissman SM, Snyder M. A highly integrated and complex PPARGC1A transcription factor binding network in HepG2 cells. Genome Research. 22: 1668-79. PMID 22955979 DOI: 10.1101/gr.127761.111  1
2012 Chen R, Mias GI, Li-Pook-Than J, Jiang L, Lam HY, Chen R, Miriami E, Karczewski KJ, Hariharan M, Dewey FE, Cheng Y, Clark MJ, Im H, Habegger L, Balasubramanian S, ... ... Snyder M, et al. Personal omics profiling reveals dynamic molecular and medical phenotypes. Cell. 148: 1293-307. PMID 22424236 DOI: 10.1016/j.cell.2012.02.009  1
2011 Haraksingh RR, Abyzov A, Gerstein M, Urban AE, Snyder M. Genome-wide mapping of copy number variation in humans: comparative analysis of high resolution array platforms. Plos One. 6: e27859. PMID 22140474 DOI: 10.1371/journal.pone.0027859  1
2011 Mok J, Zhu X, Snyder M. Dissecting phosphorylation networks: lessons learned from yeast. Expert Review of Proteomics. 8: 775-86. PMID 22087660 DOI: 10.1586/epr.11.64  1
2011 Waern K, Nagalakshmi U, Snyder M. RNA sequencing. Methods in Molecular Biology (Clifton, N.J.). 759: 125-32. PMID 21863485 DOI: 10.1007/978-1-61779-173-4_8  1
2011 Smith MG, Ptacek J, Snyder M. Kinase substrate interactions. Methods in Molecular Biology (Clifton, N.J.). 723: 201-12. PMID 21370067 DOI: 10.1007/978-1-61779-043-0_13  0.36
2010 Lefrançois P, Zheng W, Snyder M. ChIP-Seq using high-throughput DNA sequencing for genome-wide identification of transcription factor binding sites. Methods in Enzymology. 470: 77-104. PMID 20946807 DOI: 10.1016/S0076-6879(10)70004-5  0.32
2010 Talarek N, Cameroni E, Jaquenoud M, Luo X, Bontron S, Lippman S, Devgan G, Snyder M, Broach JR, De Virgilio C. Initiation of the TORC1-regulated G0 program requires Igo1/2, which license specific mRNAs to evade degradation via the 5'-3' mRNA decay pathway. Molecular Cell. 38: 345-55. PMID 20471941 DOI: 10.1016/j.molcel.2010.02.039  0.4
2010 Mok J, Kim PM, Lam HY, Piccirillo S, Zhou X, Jeschke GR, Sheridan DL, Parker SA, Desai V, Jwa M, Cameroni E, Niu H, Good M, Remenyi A, Ma JL, ... ... Snyder M, et al. Deciphering protein kinase specificity through large-scale analysis of yeast phosphorylation site motifs. Science Signaling. 3: ra12. PMID 20159853 DOI: 10.1126/scisignal.2000482  0.68
2010 Nagalakshmi U, Waern K, Snyder M. RNA-Seq: a method for comprehensive transcriptome analysis. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. Unit 4.11.1-13. PMID 20069539 DOI: 10.1002/0471142727.mb0411s89  1
2009 Auerbach RK, Euskirchen G, Rozowsky J, Lamarre-Vincent N, Moqtaderi Z, Lefrançois P, Struhl K, Gerstein M, Snyder M. Mapping accessible chromatin regions using Sono-Seq. Proceedings of the National Academy of Sciences of the United States of America. 106: 14926-31. PMID 19706456 DOI: 10.1073/pnas.0905443106  1
2009 Teytelman L, Ozaydin B, Zill O, Lefrançois P, Snyder M, Rine J, Eisen MB. Impact of chromatin structures on DNA processing for genomic analyses. Plos One. 4: e6700. PMID 19693276 DOI: 10.1371/journal.pone.0006700  0.44
2009 Theodorou E, Dalembert G, Heffelfinger C, White E, Weissman S, Corcoran L, Snyder M. A high throughput embryonic stem cell screen identifies Oct-2 as a bifunctional regulator of neuronal differentiation. Genes & Development. 23: 575-88. PMID 19270158 DOI: 10.1101/gad.1772509  0.44
2009 Lefrançois P, Euskirchen GM, Auerbach RK, Rozowsky J, Gibson T, Yellman CM, Gerstein M, Snyder M. Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing. Bmc Genomics. 10: 37. PMID 19159457 DOI: 10.1186/1471-2164-10-37  0.44
2008 Reed BD, Charos AE, Szekely AM, Weissman SM, Snyder M. Genome-wide occupancy of SREBP1 and its partners NFY and SP1 reveals novel functional roles and combinatorial regulation of distinct classes of genes. Plos Genetics. 4: e1000133. PMID 18654640 DOI: 10.1371/journal.pgen.1000133  1
2008 Nagalakshmi U, Wang Z, Waern K, Shou C, Raha D, Gerstein M, Snyder M. The transcriptional landscape of the yeast genome defined by RNA sequencing. Science (New York, N.Y.). 320: 1344-9. PMID 18451266 DOI: 10.1126/science.1158441  1
2008 Chang W, Zaarour RF, Reck-Peterson S, Rinn J, Singer RH, Snyder M, Novick P, Mooseker MS. Myo2p, a class V myosin in budding yeast, associates with a large ribonucleic acid-protein complex that contains mRNAs and subunits of the RNA-processing body. Rna (New York, N.Y.). 14: 491-502. PMID 18218704 DOI: 10.1261/rna.665008  0.44
2007 Zhu X, Gerstein M, Snyder M. Getting connected: analysis and principles of biological networks. Genes & Development. 21: 1010-24. PMID 17473168 DOI: 10.1101/gad.1528707  1
2007 Hall DA, Ptacek J, Snyder M. Protein microarray technology. Mechanisms of Ageing and Development. 128: 161-7. PMID 17126887 DOI: 10.1016/j.mad.2006.11.021  1
2006 Zhu X, Gerstein M, Snyder M. ProCAT: a data analysis approach for protein microarrays. Genome Biology. 7: R110. PMID 17109749 DOI: 10.1186/gb-2006-7-11-r110  1
2006 Royce TE, Rozowsky JS, Luscombe NM, Emanuelsson O, Yu H, Zhu X, Snyder M, Gerstein MB. Extrapolating traditional DNA microarray statistics to tiling and protein microarray technologies. Methods in Enzymology. 411: 282-311. PMID 16939796 DOI: 10.1016/S0076-6879(06)11015-0  1
2006 Ptacek J, Snyder M. Charging it up: global analysis of protein phosphorylation. Trends in Genetics : Tig. 22: 545-54. PMID 16908088 DOI: 10.1016/j.tig.2006.08.005  1
2006 Zhu H, Hu S, Jona G, Zhu X, Kreiswirth N, Willey BM, Mazzulli T, Liu G, Song Q, Chen P, Cameron M, Tyler A, Wang J, Wen J, Chen W, ... ... Snyder M, et al. Severe acute respiratory syndrome diagnostics using a coronavirus protein microarray. Proceedings of the National Academy of Sciences of the United States of America. 103: 4011-6. PMID 16537477 DOI: 10.1073/pnas.0510921103  1
2006 Kastenmayer JP, Ni L, Chu A, Kitchen LE, Au WC, Yang H, Carter CD, Wheeler D, Davis RW, Boeke JD, Snyder MA, Basrai MA. Functional genomics of genes with small open reading frames (sORFs) in S. cerevisiae. Genome Research. 16: 365-73. PMID 16510898 DOI: 10.1101/gr.4355406  0.8
2005 Ptacek J, Devgan G, Michaud G, Zhu H, Zhu X, Fasolo J, Guo H, Jona G, Breitkreutz A, Sopko R, McCartney RR, Schmidt MC, Rachidi N, Lee SJ, Mah AS, ... ... Snyder M, et al. Global analysis of protein phosphorylation in yeast. Nature. 438: 679-84. PMID 16319894 DOI: 10.1038/nature04187  1
2005 Hartman SE, Bertone P, Nath AK, Royce TE, Gerstein M, Weissman S, Snyder M. Global changes in STAT target selection and transcription regulation upon interferon treatments. Genes & Development. 19: 2953-68. PMID 16319195 DOI: 10.1101/gad.1371305  1
2005 Mah AS, Elia AE, Devgan G, Ptacek J, Schutkowski M, Snyder M, Yaffe MB, Deshaies RJ. Substrate specificity analysis of protein kinase complex Dbf2-Mob1 by peptide library and proteome array screening. Bmc Biochemistry. 6: 22. PMID 16242037 DOI: 10.1186/1471-2091-6-22  1
2005 Rinn JL, Snyder M. Sexual dimorphism in mammalian gene expression. Trends in Genetics : Tig. 21: 298-305. PMID 15851067 DOI: 10.1016/j.tig.2005.03.005  1
2005 Smith MG, Jona G, Ptacek J, Devgan G, Zhu H, Zhu X, Snyder M. Global analysis of protein function using protein microarrays. Mechanisms of Ageing and Development. 126: 171-5. PMID 15610776 DOI: 10.1016/j.mad.2004.09.019  1
2004 Bertone P, Stolc V, Royce TE, Rozowsky JS, Urban AE, Zhu X, Rinn JL, Tongprasit W, Samanta M, Weissman S, Gerstein M, Snyder M. Global identification of human transcribed sequences with genome tiling arrays. Science (New York, N.Y.). 306: 2242-6. PMID 15539566 DOI: 10.1126/science.1103388  1
2004 Hall DA, Zhu H, Zhu X, Royce T, Gerstein M, Snyder M. Regulation of gene expression by a metabolic enzyme. Science (New York, N.Y.). 306: 482-4. PMID 15486299 DOI: 10.1126/science.1096773  1
2004 Rinn JL, Rozowsky JS, Laurenzi IJ, Petersen PH, Zou K, Zhong W, Gerstein M, Snyder M. Major molecular differences between mammalian sexes are involved in drug metabolism and renal function. Developmental Cell. 6: 791-800. PMID 15177028 DOI: 10.1016/j.devcel.2004.05.005  1
2004 Euskirchen G, Royce TE, Bertone P, Martone R, Rinn JL, Nelson FK, Sayward F, Luscombe NM, Miller P, Gerstein M, Weissman S, Snyder M. CREB binds to multiple loci on human chromosome 22. Molecular and Cellular Biology. 24: 3804-14. PMID 15082775 DOI: 10.1128/MCB.24.9.3804-3814.2004  1
2004 Bidlingmaier S, Snyder M. Regulation of polarized growth initiation and termination cycles by the polarisome and Cdc42 regulators. The Journal of Cell Biology. 164: 207-18. PMID 14734532 DOI: 10.1083/jcb.200307065  1
2003 Lian Z, Euskirchen G, Rinn J, Martone R, Bertone P, Hartman S, Royce T, Nelson K, Sayward F, Luscombe N, Yang J, Li JL, Miller P, Urban AE, Gerstein M, ... ... Snyder M, et al. Identification of novel functional elements in the human genome. Cold Spring Harbor Symposia On Quantitative Biology. 68: 317-22. PMID 15338632  1
2003 Martone R, Euskirchen G, Bertone P, Hartman S, Royce TE, Luscombe NM, Rinn JL, Nelson FK, Miller P, Gerstein M, Weissman S, Snyder M. Distribution of NF-kappaB-binding sites across human chromosome 22. Proceedings of the National Academy of Sciences of the United States of America. 100: 12247-52. PMID 14527995 DOI: 10.1073/pnas.2135255100  1
2003 Hanrahan J, Snyder M. Cytoskeletal activation of a checkpoint kinase. Molecular Cell. 12: 663-73. PMID 14527412  0.96
2003 Luscombe NM, Royce TE, Bertone P, Echols N, Horak CE, Chang JT, Snyder M, Gerstein M. ExpressYourself: A modular platform for processing and visualizing microarray data. Nucleic Acids Research. 31: 3477-82. PMID 12824348 DOI: 10.1093/nar/gkg628  1
2003 Reboul J, Vaglio P, Rual JF, Lamesch P, Martinez M, Armstrong CM, Li S, Jacotot L, Bertin N, Janky R, Moore T, Hudson JR, Hartley JL, Brasch MA, Vandenhaute J, ... ... Snyder M, et al. C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression. Nature Genetics. 34: 35-41. PMID 12679813 DOI: 10.1038/ng1140  1
2003 Rinn JL, Euskirchen G, Bertone P, Martone R, Luscombe NM, Hartman S, Harrison PM, Nelson FK, Miller P, Gerstein M, Weissman S, Snyder M. The transcriptional activity of human Chromosome 22. Genes & Development. 17: 529-40. PMID 12600945 DOI: 10.1101/gad.1055203  1
2002 Horak CE, Luscombe NM, Qian J, Bertone P, Piccirrillo S, Gerstein M, Snyder M. Complex transcriptional circuitry at the G1/S transition in Saccharomyces cerevisiae. Genes & Development. 16: 3017-33. PMID 12464632 DOI: 10.1101/gad.1039602  1
2002 Horak CE, Snyder M. Global analysis of gene expression in yeast. Functional & Integrative Genomics. 2: 171-80. PMID 12192590 DOI: 10.1007/s10142-002-0065-3  1
2002 Giaever G, Chu AM, Ni L, Connelly C, Riles L, Véronneau S, Dow S, Lucau-Danila A, Anderson K, André B, Arkin AP, Astromoff A, El-Bakkoury M, Bangham R, Benito R, ... ... Snyder M, et al. Functional profiling of the Saccharomyces cerevisiae genome. Nature. 418: 387-91. PMID 12140549 DOI: 10.1038/nature00935  1
2002 Horak CE, Snyder M. ChIP-chip: a genomic approach for identifying transcription factor binding sites. Methods in Enzymology. 350: 469-83. PMID 12073330 DOI: 10.1016/S0076-6879(02)50979-4  1
2002 Bidlingmaier S, Snyder M. Carbohydrate analysis prepares to enter the "Omics" era. Chemistry & Biology. 9: 400-1. PMID 11983329 DOI: 10.1016/S1074-5521(02)00133-3  1
2002 Bidlingmaier S, Snyder M. Large-scale identification of genes important for apical growth in Saccharomyces cerevisiae by directed allele replacement technology (DART) screening. Functional & Integrative Genomics. 1: 345-56. PMID 11957109 DOI: 10.1007/s10142-001-0043-1  1
2002 Horak CE, Mahajan MC, Luscombe NM, Gerstein M, Weissman SM, Snyder M. GATA-1 binding sites mapped in the beta-globin locus by using mammalian chIp-chip analysis. Proceedings of the National Academy of Sciences of the United States of America. 99: 2924-9. PMID 11867748 DOI: 10.1073/pnas.052706999  1
2001 Zhu H, Bilgin M, Bangham R, Hall D, Casamayor A, Bertone P, Lan N, Jansen R, Bidlingmaier S, Houfek T, Mitchell T, Miller P, Dean RA, Gerstein M, Snyder M. Global analysis of protein activities using proteome chips. Science (New York, N.Y.). 293: 2101-5. PMID 11474067 DOI: 10.1126/science.1062191  0.44
2001 Bidlingmaier S, Weiss EL, Seidel C, Drubin DG, Snyder M. The Cbk1p pathway is important for polarized cell growth and cell separation in Saccharomyces cerevisiae. Molecular and Cellular Biology. 21: 2449-62. PMID 11259593 DOI: 10.1128/MCB.21.7.2449-2462.2001  0.36
2001 Iyer VR, Horak CE, Scafe CS, Botstein D, Snyder M, Brown PO. Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF. Nature. 409: 533-8. PMID 11206552 DOI: 10.1038/35054095  1
2000 Barrett JG, Manning BD, Snyder M. The Kar3p kinesin-related protein forms a novel heterodimeric structure with its associated protein Cik1p. Molecular Biology of the Cell. 11: 2373-85. PMID 10888675  1
2000 Sheu YJ, Barral Y, Snyder M. Polarized growth controls cell shape and bipolar bud site selection in Saccharomyces cerevisiae. Molecular and Cellular Biology. 20: 5235-47. PMID 10866679 DOI: 10.1128/MCB.20.14.5235-5247.2000  1
2000 Manning BD, Snyder M. Drivers and passengers wanted! the role of kinesin-associated proteins. Trends in Cell Biology. 10: 281-9. PMID 10856931 DOI: 10.1016/S0962-8924(00)01774-8  1
1999 Winzeler EA, Shoemaker DD, Astromoff A, Liang H, Anderson K, Andre B, Bangham R, Benito R, Boeke JD, Bussey H, Chu AM, Connelly C, Davis K, Dietrich F, Dow SW, ... ... Snyder M, et al. Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science (New York, N.Y.). 285: 901-6. PMID 10436161 DOI: 10.1126/science.285.5429.901  1
1999 Manning BD, Barrett JG, Wallace JA, Granok H, Snyder M. Differential regulation of the Kar3p kinesin-related protein by two associated proteins, Cik1p and Vik1p. The Journal of Cell Biology. 144: 1219-33. PMID 10087265 DOI: 10.1083/jcb.144.6.1219  1
1999 Barral Y, Parra M, Bidlingmaier S, Snyder M. Nim1-related kinases coordinate cell cycle progression with the organization of the peripheral cytoskeleton in yeast. Genes & Development. 13: 176-87. PMID 9925642  1
1998 Sheu YJ, Santos B, Fortin N, Costigan C, Snyder M. Spa2p interacts with cell polarity proteins and signaling components involved in yeast cell morphogenesis. Molecular and Cellular Biology. 18: 4053-69. PMID 9632790  1
1998 Roemer T, Vallier L, Sheu YJ, Snyder M. The Spa2-related protein, Sph1p, is important for polarized growth in yeast. Journal of Cell Science. 111: 479-94. PMID 9443897  1
1997 Manning BD, Padmanabha R, Snyder M. The Rho-GEF Rom2p localizes to sites of polarized cell growth and participates in cytoskeletal functions in Saccharomyces cerevisiae. Molecular Biology of the Cell. 8: 1829-44. PMID 9348527  1
1997 Madden K, Sheu YJ, Baetz K, Andrews B, Snyder M. SBF cell cycle regulator as a target of the yeast PKC-MAP kinase pathway. Science (New York, N.Y.). 275: 1781-4. PMID 9065400 DOI: 10.1126/science.275.5307.1781  1
1988 Snyder M, Sapolsky RJ, Davis RW. Transcription interferes with elements important for chromosome maintenance in Saccharomyces cerevisiae. Molecular and Cellular Biology. 8: 2184-94. PMID 3290652  0.8
1988 Snyder M, Davis RW. SPA1: a gene important for chromosome segregation and other mitotic functions in S. cerevisiae. Cell. 54: 743-54. PMID 3044610  0.8
1987 Snyder M, Elledge S, Sweetser D, Young RA, Davis RW. Lambda gt 11: gene isolation with antibody probes and other applications. Methods in Enzymology. 154: 107-28. PMID 2448583  0.8
1986 Snyder M, Buchman AR, Davis RW. Bent DNA at a yeast autonomously replicating sequence. Nature. 324: 87-9. PMID 3785376 DOI: 10.1038/324087a0  0.8
1986 Snyder M, Elledge S, Davis RW. Rapid mapping of antigenic coding regions and constructing insertion mutations in yeast genes by mini-Tn10 "transplason" mutagenesis. Proceedings of the National Academy of Sciences of the United States of America. 83: 730-4. PMID 3003747  0.8
1985 Hieter P, Mann C, Snyder M, Davis RW. Mitotic stability of yeast chromosomes: a colony color assay that measures nondisjunction and chromosome loss. Cell. 40: 381-92. PMID 3967296 DOI: 10.1016/0092-8674(85)90152-7  1
1985 Johnson LM, Snyder M, Chang LM, Davis RW, Campbell JL. Isolation of the gene encoding yeast DNA polymerase I. Cell. 43: 369-77. PMID 3907855  0.8
1983 Snyder M, Davidson N. Two gene families clustered in a small region of the Drosophila genome. Journal of Molecular Biology. 166: 101-18. PMID 6854639  0.92
1982 Snyder M, Hunkapiller M, Yuen D, Silvert D, Fristrom J, Davidson N. Cuticle protein genes of Drosophila: structure, organization and evolution of four clustered genes. Cell. 29: 1027-40. PMID 6817923 DOI: 10.1016/0092-8674(82)90466-4  0.4
1982 Snyder MP, Kimbrell D, Hunkapiller M, Hill R, Fristrom J, Davidson N. A transposable element that splits the promoter region inactivates a Drosophila cuticle protein gene. Proceedings of the National Academy of Sciences of the United States of America. 79: 7430-4. PMID 6296833 DOI: 10.1073/pnas.79.23.7430  0.4
1981 Snyder M, Hirsh J, Davidson N. The cuticle genes of drosophila: a developmentally regulated gene cluster. Cell. 25: 165-77. PMID 6168386 DOI: 10.1016/0092-8674(81)90241-5  0.4
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