| Year |
Citation |
Score |
| 2024 |
Ward CM, Onetto CA, Van Den Heuvel S, Cuijvers KM, Hale LJ, Borneman AR. Recombination, admixture and genome instability shape the genomic landscape of Saccharomyces cerevisiae derived from spontaneous grape ferments. Plos Genetics. 20: e1011223. PMID 38517929 DOI: 10.1371/journal.pgen.1011223 |
0.313 |
|
| 2022 |
Kutyna DR, Onetto CA, Williams TC, Goold HD, Paulsen IT, Pretorius IS, Johnson DL, Borneman AR. Construction of a synthetic Saccharomyces cerevisiae pan-genome neo-chromosome. Nature Communications. 13: 3628. PMID 35750675 DOI: 10.1038/s41467-022-31305-4 |
0.301 |
|
| 2021 |
Bartel C, Roach M, Onetto C, Curtin C, Varela C, Borneman A. Adaptive evolution of sulfite tolerance in Brettanomyces bruxellensis. Fems Yeast Research. 21. PMID 34089329 DOI: 10.1093/femsyr/foab036 |
0.351 |
|
| 2020 |
Onetto CA, Schmidt SA, Roach MJ, Borneman AR. Comparative genome analysis proposes three new Aureobasidium species isolated from grape juice. Fems Yeast Research. 20. PMID 32897317 DOI: 10.1093/Femsyr/Foaa052 |
0.376 |
|
| 2020 |
Varela C, Sundstrom J, Cuijvers K, Jiranek V, Borneman A. Discovering the indigenous microbial communities associated with the natural fermentation of sap from the cider gum Eucalyptus gunnii. Scientific Reports. 10: 14716. PMID 32895409 DOI: 10.1038/S41598-020-71663-X |
0.353 |
|
| 2020 |
Varela C, Bartel C, Onetto C, Borneman A. Targeted gene deletion in Brettanomyces bruxellensis with an expression-free CRISPR-Cas9 system. Applied Microbiology and Biotechnology. PMID 32592028 DOI: 10.1007/S00253-020-10750-5 |
0.408 |
|
| 2020 |
Onetto CA, Borneman AR, Schmidt SA. Investigating the effects of Aureobasidium pullulans on grape juice composition and fermentation. Food Microbiology. 90: 103451. PMID 32336373 DOI: 10.1016/J.Fm.2020.103451 |
0.318 |
|
| 2020 |
Roach MJ, Borneman AR. New genome assemblies reveal patterns of domestication and adaptation across Brettanomyces (Dekkera) species. Bmc Genomics. 21: 194. PMID 32122298 DOI: 10.1186/S12864-020-6595-Z |
0.366 |
|
| 2020 |
Varela C, Bartel C, Nandorfy DE, Borneman A, Schmidt S, Curtin C. Identification of flocculant wine yeast strains with improved filtration-related phenotypes through application of high-throughput sedimentation rate assays. Scientific Reports. 10: 2738. PMID 32066762 DOI: 10.1038/S41598-020-59579-Y |
0.411 |
|
| 2020 |
Cuijvers K, Heuvel SVD, Varela C, Rullo M, Solomon M, Schmidt S, Borneman A. Alterations in Yeast Species Composition of Uninoculated Wine Ferments by the Addition of Sulphur Dioxide Fermentation. 6: 62. DOI: 10.3390/Fermentation6020062 |
0.34 |
|
| 2019 |
Schmidt SA, Kolouchova R, Forgan AH, Borneman AR. Evaluation of Wine Yeast Competitive Fitness in Enologically Relevant Environments by Barcode Sequencing. G3 (Bethesda, Md.). PMID 31792006 DOI: 10.1534/G3.119.400743 |
0.366 |
|
| 2019 |
Avramova M, Grbin P, Borneman A, Albertin W, Masneuf-Pomarède I, Varela C. Competition experiments between Brettanomyces bruxellensis strains reveal specific adaptation to sulfur dioxide and complex interactions at intraspecies level. Fems Yeast Research. 19. PMID 30721945 DOI: 10.1093/Femsyr/Foz010 |
0.398 |
|
| 2019 |
Cordente AG, Borneman AR, Bartel C, Capone D, Solomon M, Roach M, Curtin CD. Inactivating mutations in Irc7p are common in wine yeasts, attenuating carbon-sulfur β-lyase activity and volatile sulfur compound production. Applied and Environmental Microbiology. PMID 30658969 DOI: 10.1128/Aem.02684-18 |
0.414 |
|
| 2019 |
Varela C, Bartel C, Roach M, Borneman A, Curtin C. Haplotypes Confer Different Levels of Sulfite Tolerance When Expressed in a Null Mutant. Applied and Environmental Microbiology. 85. PMID 30552183 DOI: 10.1128/Aem.02429-18 |
0.453 |
|
| 2019 |
Varela C, Lleixà J, Curtin C, Borneman A. Development of a genetic transformation toolkit for Brettanomyces bruxellensis. Fems Yeast Research. 18. PMID 29982550 DOI: 10.1093/Femsyr/Foy070 |
0.363 |
|
| 2018 |
Roach MJ, Schmidt SA, Borneman AR. Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies. Bmc Bioinformatics. 19: 460. PMID 30497373 DOI: 10.1186/S12859-018-2485-7 |
0.314 |
|
| 2018 |
Roach MJ, Johnson DL, Bohlmann J, van Vuuren HJJ, Jones SJM, Pretorius IS, Schmidt SA, Borneman AR. Population sequencing reveals clonal diversity and ancestral inbreeding in the grapevine cultivar Chardonnay. Plos Genetics. 14: e1007807. PMID 30458008 DOI: 10.1371/Journal.Pgen.1007807 |
0.355 |
|
| 2018 |
Varela C, Schmidt SA, Borneman AR, Ignatius Pang CN, Krömerx JO, Khan A, Song X, Hodson MP, Solomon M, Mayr CM, Hines W, Pretorius IS, Baker MS, Roessner U, Mercurio M, et al. Systems-based approaches enable identification of gene targets which improve the flavour profile of low-ethanol wine yeast strains. Metabolic Engineering. PMID 30138679 DOI: 10.1016/J.Ymben.2018.08.006 |
0.394 |
|
| 2018 |
Bellon JR, Ford CM, Borneman AR, Chambers PJ. A Novel Approach to Isolating Improved Industrial Interspecific Wine Yeasts Using Chromosomal Mutations as Potential Markers for Increased Fitness. Frontiers in Microbiology. 9: 1442. PMID 30034376 DOI: 10.3389/Fmicb.2018.01442 |
0.394 |
|
| 2018 |
Cordente AG, Solomon M, Schulkin A, Leigh Francis I, Barker A, Borneman AR, Curtin CD. Novel wine yeast with ARO4 and TYR1 mutations that overproduce 'floral' aroma compounds 2-phenylethanol and 2-phenylethyl acetate. Applied Microbiology and Biotechnology. PMID 29744630 DOI: 10.1007/S00253-018-9054-X |
0.427 |
|
| 2018 |
Peter JJ, Watson TL, Walker ME, Gardner JM, Lang TA, Borneman A, Forgan A, Tran T, Jiranek V. Use of a wine yeast deletion collection reveals genes that influence fermentation performance under low nitrogen conditions. Fems Yeast Research. PMID 29425293 DOI: 10.1093/Femsyr/Foy009 |
0.429 |
|
| 2017 |
Sternes PR, Costello PJ, Chambers PJ, Bartowsky EJ, Borneman AR. Whole transcriptome RNAseq analysis of Oenococcus oeni reveals distinct intra-specific expression patterns during malolactic fermentation, including genes involved in diacetyl metabolism. International Journal of Food Microbiology. 257: 216-224. PMID 28688370 DOI: 10.1016/J.Ijfoodmicro.2017.06.024 |
0.462 |
|
| 2017 |
Sternes PR, Lee D, Kutyna DR, Borneman AR. A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation. Gigascience. PMID 28595314 DOI: 10.1093/Gigascience/Gix040 |
0.417 |
|
| 2016 |
Sternes PR, Lee D, Kutyna DR, Borneman AR. Genome Sequences of Three Species of Hanseniaspora Isolated from Spontaneous Wine Fermentations. Genome Announcements. 4. PMID 27856586 DOI: 10.1128/Genomea.01287-16 |
0.334 |
|
| 2016 |
Varela C, Borneman AR. Yeasts found in vineyards and wineries. Yeast (Chichester, England). PMID 27813152 DOI: 10.1002/Yea.3219 |
0.349 |
|
| 2016 |
Sternes PR, Borneman AR. Consensus pan-genome assembly of the specialised wine bacterium Oenococcus oeni. Bmc Genomics. 17: 308. PMID 27118061 DOI: 10.1186/S12864-016-2604-7 |
0.442 |
|
| 2016 |
Lee D, Lloyd ND, Pretorius IS, Borneman AR. Heterologous production of raspberry ketone in the wine yeast Saccharomyces cerevisiae via pathway engineering and synthetic enzyme fusion. Microbial Cell Factories. 15: 49. PMID 26944880 DOI: 10.1186/S12934-016-0446-2 |
0.377 |
|
| 2016 |
Borneman AR, Forgan AH, Kolouchova R, Fraser JA, Schmidt SA. Whole Genome Comparison Reveals High Levels of Inbreeding and Strain Redundancy Across the Spectrum of Commercial Wine Strains of Saccharomyces cerevisiae. G3 (Bethesda, Md.). PMID 26869621 DOI: 10.1534/G3.115.025692 |
0.601 |
|
| 2015 |
Crauwels S, Van Assche A, de Jonge R, Borneman AR, Verreth C, Troels P, De Samblanx G, Marchal K, Van de Peer Y, Willems KA, Verstrepen KJ, Curtin CD, Lievens B. Comparative phenomics and targeted use of genomics reveals variation in carbon and nitrogen assimilation among different Brettanomyces bruxellensis strains. Applied Microbiology and Biotechnology. 99: 9123-34. PMID 26135985 DOI: 10.1007/S00253-015-6769-9 |
0.394 |
|
| 2015 |
Borneman AR, Pretorius IS. Genomic insights into the Saccharomyces sensu stricto complex. Genetics. 199: 281-91. PMID 25657346 DOI: 10.1534/Genetics.114.173633 |
0.376 |
|
| 2015 |
Chambers PJ, Borneman AR, Varela C, Cordente AG, Bellon JR, Tran TMT, Henschke PA, Curtin CD. Ongoing domestication of wine yeast: Past, present and future Australian Journal of Grape and Wine Research. 21: 642-650. DOI: 10.1111/Ajgw.12190 |
0.377 |
|
| 2014 |
Borneman AR, Zeppel R, Chambers PJ, Curtin CD. Insights into the Dekkera bruxellensis genomic landscape: comparative genomics reveals variations in ploidy and nutrient utilisation potential amongst wine isolates. Plos Genetics. 10: e1004161. PMID 24550744 DOI: 10.1371/Journal.Pgen.1004161 |
0.463 |
|
| 2013 |
Borneman AR, Schmidt SA, Pretorius IS. At the cutting-edge of grape and wine biotechnology Trends in Genetics. 29: 263-271. PMID 23218459 DOI: 10.1016/J.Tig.2012.10.014 |
0.313 |
|
| 2013 |
Borneman AR, Pretorius IS, Chambers PJ. Comparative genomics: a revolutionary tool for wine yeast strain development. Current Opinion in Biotechnology. 24: 192-9. PMID 22947601 DOI: 10.1016/J.Copbio.2012.08.006 |
0.424 |
|
| 2012 |
Borneman AR, McCarthy JM, Chambers PJ, Bartowsky EJ. Comparative analysis of the Oenococcus oeni pan genome reveals genetic diversity in industrially-relevant pathways. Bmc Genomics. 13: 373. PMID 22863143 DOI: 10.1186/1471-2164-13-373 |
0.462 |
|
| 2012 |
Varela C, Kutyna DR, Solomon MR, Black CA, Borneman A, Henschke PA, Pretorius IS, Chambers PJ. Evaluation of gene modification strategies for the development of low-alcohol-wine yeasts. Applied and Environmental Microbiology. 78: 6068-77. PMID 22729542 DOI: 10.1128/Aem.01279-12 |
0.365 |
|
| 2012 |
Curtin CD, Borneman AR, Chambers PJ, Pretorius IS. De-novo assembly and analysis of the heterozygous triploid genome of the wine spoilage yeast Dekkera bruxellensis AWRI1499. Plos One. 7: e33840. PMID 22470482 DOI: 10.1371/Journal.Pone.0033840 |
0.404 |
|
| 2012 |
Borneman AR, McCarthy JM, Chambers PJ, Bartowsky EJ. Functional divergence in the genus Oenococcus as predicted by genome sequencing of the newly-described species, Oenococcus kitaharae. Plos One. 7: e29626. PMID 22235313 DOI: 10.1371/Journal.Pone.0029626 |
0.385 |
|
| 2012 |
Borneman AR, Desany BA, Riches D, Affourtit JP, Forgan AH, Pretorius IS, Egholm M, Chambers PJ. The genome sequence of the wine yeast VIN7 reveals an allotriploid hybrid genome with Saccharomyces cerevisiae and Saccharomyces kudriavzevii origins. Fems Yeast Research. 12: 88-96. PMID 22136070 DOI: 10.1111/J.1567-1364.2011.00773.X |
0.399 |
|
| 2012 |
Kutyna DR, Varela C, Stanley GA, Borneman AR, Henschke PA, Chambers PJ. Adaptive evolution of Saccharomyces cerevisiae to generate strains with enhanced glycerol production. Applied Microbiology and Biotechnology. 93: 1175-84. PMID 21989563 DOI: 10.1007/S00253-011-3622-7 |
0.425 |
|
| 2011 |
Bartowsky EJ, Borneman AR. Genomic variations of Oenococcus oeni strains and the potential to impact on malolactic fermentation and aroma compounds in wine. Applied Microbiology and Biotechnology. 92: 441-7. PMID 21870044 DOI: 10.1007/S00253-011-3546-2 |
0.372 |
|
| 2011 |
Borneman AR, Desany BA, Riches D, Affourtit JP, Forgan AH, Pretorius IS, Egholm M, Chambers PJ. Whole-genome comparison reveals novel genetic elements that characterize the genome of industrial strains of Saccharomyces cerevisiae. Plos Genetics. 7: e1001287. PMID 21304888 DOI: 10.1371/Journal.Pgen.1001287 |
0.457 |
|
| 2011 |
Borneman AR, Bartowsky EJ. Comparative genomics in the wine bacterium Oenococcus oeni Microbiology Australia. 32: 174. DOI: 10.1071/Ma11174 |
0.356 |
|
| 2011 |
Varela C, Schmidt SA, Borneman AR, Kromer JO, Khan A, Chambers PJ. Systems biology: a new paradigm for industrial yeast strain development Microbiology Australia. 32: 151-155. DOI: 10.1071/Ma11151 |
0.417 |
|
| 2010 |
Stanley D, Chambers PJ, Stanley GA, Borneman A, Fraser S. Transcriptional changes associated with ethanol tolerance in Saccharomyces cerevisiae. Applied Microbiology and Biotechnology. 88: 231-9. PMID 20661734 DOI: 10.1007/S00253-010-2760-7 |
0.306 |
|
| 2010 |
Borneman AR, Bartowsky EJ, McCarthy J, Chambers PJ. Genotypic diversity in Oenococcus oeni by high-density microarray comparative genome hybridization and whole genome sequencing. Applied Microbiology and Biotechnology. 86: 681-91. PMID 20111862 DOI: 10.1007/S00253-009-2425-6 |
0.438 |
|
| 2008 |
Borneman AR, Forgan AH, Pretorius IS, Chambers PJ. Comparative genome analysis of a Saccharomyces cerevisiae wine strain. Fems Yeast Research. 8: 1185-95. PMID 18778279 DOI: 10.1111/J.1567-1364.2008.00434.X |
0.438 |
|
| 2007 |
Borneman AR, Gianoulis TA, Zhang ZD, Yu H, Rozowsky J, Seringhaus MR, Wang LY, Gerstein M, Snyder M. Divergence of transcription factor binding sites across related yeast species. Science (New York, N.Y.). 317: 815-9. PMID 17690298 DOI: 10.1126/Science.1140748 |
0.35 |
|
| 2007 |
Borneman AR, Chambers PJ, Pretorius IS. Yeast systems biology: modelling the winemaker's art. Trends in Biotechnology. 25: 349-55. PMID 17590464 DOI: 10.1016/J.Tibtech.2007.05.006 |
0.331 |
|
| 2007 |
Bartowsky E, Bellon J, Borneman A, Chambers P, Cordente A, Costello P, Curtin C, Forgan A, Henschke P, Kutyna D, McCarthy J, Macintyre O, Schmidt S, Tran T, Swiegers H, et al. Not all wine yeast are equal Microbiology Australia. 28: 55. DOI: 10.1071/Ma07055 |
0.352 |
|
| 2006 |
Srikantha T, Borneman AR, Daniels KJ, Pujol C, Wu W, Seringhaus MR, Gerstein M, Yi S, Snyder M, Soll DR. TOS9 regulates white-opaque switching in Candida albicans. Eukaryotic Cell. 5: 1674-87. PMID 16950924 DOI: 10.1128/Ec.00252-06 |
0.316 |
|
| 2006 |
Seringhaus M, Paccanaro A, Borneman A, Snyder M, Gerstein M. Predicting essential genes in fungal genomes. Genome Research. 16: 1126-35. PMID 16899653 DOI: 10.1101/Gr.5144106 |
0.357 |
|
| 2006 |
Borneman AR, Leigh-Bell JA, Yu H, Bertone P, Gerstein M, Snyder M. Target hub proteins serve as master regulators of development in yeast. Genes & Development. 20: 435-48. PMID 16449570 DOI: 10.1101/Gad.1389306 |
0.317 |
|
| 2002 |
Borneman AR, Hynes MJ, Andrianopoulos A. A basic helix-loop-helix protein with similarity to the fungal morphological regulators, Phd1p, Efg1p and StuA, controls conidiation but not dimorphic growth in Penicillium marneffei. Molecular Microbiology. 44: 621-31. PMID 11994146 DOI: 10.1046/J.1365-2958.2002.02906.X |
0.658 |
|
| 2000 |
Borneman AR, Hynes MJ, Andrianopoulos A. The abaA homologue of Penicillium marneffei participates in two developmental programmes: conidiation and dimorphic growth. Molecular Microbiology. 38: 1034-47. PMID 11123677 DOI: 10.1046/J.1365-2958.2000.02202.X |
0.668 |
|
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