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Jef D. Boeke, PhD Dsc - Publications

Affiliations: 
1985-2013 Molecular Biology & Genetics Johns Hopkins University, Baltimore, MD 
 2014- Institute for Systems Genetics NYU Langone Health  
Area:
Molecular Biology, Genetics, Microbiology Biology
Website:
https://med.nyu.edu/research/boeke-lab/
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318 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Camellato BR, Brosh R, Ashe HJ, Maurano MT, Boeke JD. Synthetic reversed sequences reveal default genomic states. Nature. PMID 38448583 DOI: 10.1038/s41586-024-07128-2  0.302
2023 Jiang S, Luo Z, Wu J, Yu K, Zhao S, Cai Z, Yu W, Wang H, Cheng L, Liang Z, Gao H, Monti M, Schindler D, Huang L, Zeng C, ... ... Boeke JD, et al. Building a eukaryotic chromosome arm by de novo design and synthesis. Nature Communications. 14: 7886. PMID 38036514 DOI: 10.1038/s41467-023-43531-5  0.319
2023 Williams TC, Kroukamp H, Xu X, Wightman ELI, Llorente B, Borneman AR, Carpenter AC, Van Wyk N, Meier F, Collier TRV, Espinosa MI, Daniel EL, Walker RSK, Cai Y, Nevalainen HKM, ... ... Boeke JD, et al. Parallel laboratory evolution and rational debugging reveal genomic plasticity to synthetic chromosome XIV defects. Cell Genomics. 3: 100379. PMID 38020977 DOI: 10.1016/j.xgen.2023.100379  0.761
2023 McCulloch LH, Sambasivam V, Hughes AL, Annaluru N, Ramalingam S, Fanfani V, Lobzaev E, Mitchell LA, Cai J, Jiang H, LaCava J, Taylor MS, Bishai WR, Stracquadanio G, Steinmetz LM, ... ... Boeke JD, et al. Consequences of a telomerase-related fitness defect and chromosome substitution technology in yeast strains. Cell Genomics. 3: 100419. PMID 38020974 DOI: 10.1016/j.xgen.2023.100419  0.734
2023 Blount BA, Lu X, Driessen MRM, Jovicevic D, Sanchez MI, Ciurkot K, Zhao Y, Lauer S, McKiernan RM, Gowers GF, Sweeney F, Fanfani V, Lobzaev E, Palacios-Flores K, Walker RSK, ... ... Boeke JD, et al. Synthetic yeast chromosome XI design provides a testbed for the study of extrachromosomal circular DNA dynamics. Cell Genomics. 3: 100418. PMID 38020971 DOI: 10.1016/j.xgen.2023.100418  0.77
2023 Foo JL, Kitano S, Susanto AV, Jin Z, Lin Y, Luo Z, Huang L, Liang Z, Mitchell LA, Yang K, Wong A, Cai Y, Cai J, Stracquadanio G, Bader JS, ... Boeke JD, et al. Establishing chromosomal design-build-test-learn through a synthetic chromosome and its combinatorial reconfiguration. Cell Genomics. 3: 100435. PMID 38020970 DOI: 10.1016/j.xgen.2023.100435  0.735
2023 Lauer S, Luo J, Lazar-Stefanita L, Zhang W, McCulloch LH, Fanfani V, Lobzaev E, Haase MAB, Easo N, Zhao Y, Yu F, Cai J, Bader JS, Stracquadanio G, Boeke JD. Context-dependent neocentromere activity in synthetic yeast chromosome . Cell Genomics. 3: 100437. PMID 38020969 DOI: 10.1016/j.xgen.2023.100437  0.763
2023 Shen Y, Gao F, Wang Y, Wang Y, Zheng J, Gong J, Zhang J, Luo Z, Schindler D, Deng Y, Ding W, Lin T, Swidah R, Zhao H, Jiang S, ... ... Boeke JD, et al. Dissecting aneuploidy phenotypes by constructing Sc2.0 chromosome VII and SCRaMbLEing synthetic disomic yeast. Cell Genomics. 3: 100364. PMID 38020968 DOI: 10.1016/j.xgen.2023.100364  0.562
2023 Luo J, Vale-Silva LA, Raghavan AR, Mercy G, Heldrich J, Sun X, Li MK, Zhang W, Agmon N, Yang K, Cai J, Stracquadanio G, Thierry A, Zhao Y, Coelho C, ... ... Boeke JD, et al. Synthetic chromosome fusion: Effects on mitotic and meiotic genome structure and function. Cell Genomics. 3: 100439. PMID 38020967 DOI: 10.1016/j.xgen.2023.100439  0.744
2023 Zhang W, Lazar-Stefanita L, Yamashita H, Shen MJ, Mitchell LA, Kurasawa H, Lobzaev E, Fanfani V, Haase MAB, Sun X, Jiang Q, Goldberg GW, Ichikawa DM, Lauer SL, McCulloch LH, ... ... Boeke JD, et al. Manipulating the 3D organization of the largest synthetic yeast chromosome. Molecular Cell. PMID 37944526 DOI: 10.1016/j.molcel.2023.10.015  0.769
2023 Zhao Y, Coelho C, Hughes AL, Lazar-Stefanita L, Yang S, Brooks AN, Walker RSK, Zhang W, Lauer S, Hernandez C, Cai J, Mitchell LA, Agmon N, Shen Y, Sall J, ... ... Boeke JD, et al. Debugging and consolidating multiple synthetic chromosomes reveals combinatorial genetic interactions. Cell. PMID 37944511 DOI: 10.1016/j.cell.2023.09.025  0.76
2023 Ordoñez R, Zhang W, Ellis G, Zhu Y, Ashe HJ, Ribeiro-Dos-Santos AM, Brosh R, Huang E, Hogan MS, Boeke JD, Maurano MT. Genomic context sensitizes regulatory elements to genetic disruption. Biorxiv : the Preprint Server For Biology. PMID 37781588 DOI: 10.1101/2023.07.02.547201  0.313
2023 Fukuda M, Cai J, Bader JS, Boeke JD. Pervasive RNA folding is crucial for narnavirus genome maintenance. Proceedings of the National Academy of Sciences of the United States of America. 120: e2304082120. PMID 37339222 DOI: 10.1073/pnas.2304082120  0.523
2023 Zhao Y, Coelho C, Lauer S, Majewski M, Laurent JM, Brosh R, Boeke JD. CREEPY: CRISPR-mediated editing of synthetic episomes in yeast. Nucleic Acids Research. PMID 37326023 DOI: 10.1093/nar/gkad491  0.324
2023 Brosh R, Coelho C, Ribeiro-Dos-Santos AM, Ellis G, Hogan MS, Ashe HJ, Somogyi N, Ordoñez R, Luther RD, Huang E, Boeke JD, Maurano MT. Synthetic regulatory genomics uncovers enhancer context dependence at the Sox2 locus. Molecular Cell. PMID 36931273 DOI: 10.1016/j.molcel.2023.02.027  0.304
2023 Lazar-Stefanita L, Luo J, Haase MAB, Zhang W, Boeke JD. Two differentially stable rDNA loci coexist on the same chromosome and form a single nucleolus. Proceedings of the National Academy of Sciences of the United States of America. 120: e2219126120. PMID 36821584 DOI: 10.1073/pnas.2219126120  0.319
2022 Lazar-Stefanita L, Luo J, Montagne R, Thierry A, Sun X, Mercy G, Mozziconacci J, Koszul R, Boeke JD. Karyotype engineering reveals spatio-temporal control of replication firing and gene contacts. Cell Genomics. 2: None. PMID 35983101 DOI: 10.1016/j.xgen.2022.100163  0.311
2022 McKerrow W, Wang X, Mendez-Dorantes C, Mita P, Cao S, Grivainis M, Ding L, LaCava J, Burns KH, Boeke JD, Fenyö D. LINE-1 expression in cancer correlates with p53 mutation, copy number alteration, and S phase checkpoint. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35169076 DOI: 10.1073/pnas.2115999119  0.705
2021 Briggs EM, Mita P, Sun X, Ha S, Vasilyev N, Leopold ZR, Nudler E, Boeke JD, Logan SK. Unbiased proteomic mapping of the LINE-1 promoter using CRISPR Cas9. Mobile Dna. 12: 21. PMID 34425899 DOI: 10.1186/s13100-021-00249-9  0.773
2021 Gorbunova V, Seluanov A, Mita P, McKerrow W, Fenyö D, Boeke JD, Linker SB, Gage FH, Kreiling JA, Petrashen AP, Woodham TA, Taylor JR, Helfand SL, Sedivy JM. The role of retrotransposable elements in ageing and age-associated diseases. Nature. 596: 43-53. PMID 34349292 DOI: 10.1038/s41586-021-03542-y  0.721
2021 Mitchell LA, McCulloch LH, Pinglay S, Berger H, Bosco N, Brosh R, Bulajić M, Huang E, Hogan MS, Martin JA, Mazzoni EO, Davoli T, Maurano MT, Boeke JD. De novo assembly and delivery to mouse cells of a 101 kb functional human gene. Genetics. PMID 33742653 DOI: 10.1093/genetics/iyab038  0.32
2021 Briggs EM, McKerrow W, Mita P, Boeke JD, Logan SK, Fenyö D. RIP-seq reveals LINE-1 ORF1p association with p-body enriched mRNAs. Mobile Dna. 12: 5. PMID 33563338 DOI: 10.1186/s13100-021-00233-3  0.764
2020 Braberg H, Echeverria I, Bohn S, Cimermancic P, Shiver A, Alexander R, Xu J, Shales M, Dronamraju R, Jiang S, Dwivedi G, Bogdanoff D, Chaung KK, Hüttenhain R, Wang S, ... ... Boeke JD, et al. Genetic interaction mapping informs integrative structure determination of protein complexes. Science (New York, N.Y.). 370. PMID 33303586 DOI: 10.1126/science.aaz4910  0.541
2020 Dai J, Boeke JD, Luo Z, Jiang S, Cai Y. Sc3.0: revamping and minimizing the yeast genome. Genome Biology. 21: 205. PMID 32791980 DOI: 10.1186/S13059-020-02130-Z  0.364
2020 Zhang W, Mitchell LA, Bader JS, Boeke JD. Synthetic Genomes. Annual Review of Biochemistry. 89: 77-101. PMID 32569517 DOI: 10.1146/annurev-biochem-013118-110704  0.592
2020 Zhao Y, Boeke JD. CRISPR-Cas12a system in fission yeast for multiplex genomic editing and CRISPR interference. Nucleic Acids Research. PMID 32374858 DOI: 10.1093/Nar/Gkaa329  0.413
2020 McKerrow W, Tang Z, Steranka JP, Payer LM, Boeke JD, Keefe D, Fenyö D, Burns KH, Liu C. Human transposon insertion profiling by sequencing (TIPseq) to map LINE-1 insertions in single cells. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 375: 20190335. PMID 32075555 DOI: 10.1098/Rstb.2019.0335  0.403
2020 Mita P, Sun X, Fenyö D, Kahler DJ, Li D, Agmon N, Wudzinska A, Keegan S, Bader JS, Yun C, Boeke JD. BRCA1 and S phase DNA repair pathways restrict LINE-1 retrotransposition in human cells. Nature Structural & Molecular Biology. 27: 179-191. PMID 32042152 DOI: 10.1038/S41594-020-0374-Z  0.778
2020 Ardeljan D, Steranka JP, Liu C, Li Z, Taylor MS, Payer LM, Gorbounov M, Sarnecki JS, Deshpande V, Hruban RH, Boeke JD, Fenyö D, Wu PH, Smogorzewska A, Holland AJ, et al. Cell fitness screens reveal a conflict between LINE-1 retrotransposition and DNA replication. Nature Structural & Molecular Biology. 27: 168-178. PMID 32042151 DOI: 10.1038/S41594-020-0372-1  0.323
2020 Xia B, Yan Y, Baron M, Wagner F, Barkley D, Chiodin M, Kim SY, Keefe DL, Alukal JP, Boeke JD, Yanai I. Widespread Transcriptional Scanning in the Testis Modulates Gene Evolution Rates. Cell. 180: 248-262.e21. PMID 31978344 DOI: 10.1016/J.Cell.2019.12.015  0.376
2019 Agmon N, Temple J, Tang Z, Schraink T, Baron M, Chen J, Mita P, Martin JA, Tu BP, Yanai I, Fenyö D, Boeke JD. Phylogenetic debugging of a complete human biosynthetic pathway transplanted into yeast. Nucleic Acids Research. PMID 31745563 DOI: 10.1093/Nar/Gkz1098  0.716
2019 Adney EM, Ochmann MT, Sil S, Truong DM, Mita P, Wang X, Kahler DJ, Fenyö D, Holt LJ, Boeke JD. Comprehensive Scanning Mutagenesis of Human Retrotransposon LINE-1 Identifies Motifs Essential for Function. Genetics. PMID 31666291 DOI: 10.1534/Genetics.119.302601  0.755
2019 De Ioannes P, Leon VA, Kuang Z, Wang M, Boeke JD, Hochwagen A, Armache KJ. Structure and function of the Orc1 BAH-nucleosome complex. Nature Communications. 10: 2894. PMID 31263106 DOI: 10.2210/Pdb6Om3/Pdb  0.377
2019 Haase MAB, Truong DM, Boeke JD. Superloser: A Plasmid Shuffling Vector for with Exceedingly Low Background. G3 (Bethesda, Md.). PMID 31213518 DOI: 10.1534/G3.119.400325  0.39
2019 Laurent JM, Fu X, German S, Maurano MT, Zhang K, Boeke JD. Big DNA as a tool to dissect an age-related macular degeneration-associated haplotype. Precision Clinical Medicine. 2: 1-7. PMID 30944767 DOI: 10.1093/Pcmedi/Pby019  0.338
2019 Steranka JP, Tang Z, Grivainis M, Huang CRL, Payer LM, Rego FOR, Miller TLA, Galante PAF, Ramaswami S, Heguy A, Fenyö D, Boeke JD, Burns KH. Transposon insertion profiling by sequencing (TIPseq) for mapping LINE-1 insertions in the human genome. Mobile Dna. 10: 8. PMID 30899333 DOI: 10.1186/S13100-019-0148-5  0.417
2019 Pretorius IS, Boeke JD. Yeast 2.0-connecting the dots in the construction of the world's first functional synthetic eukaryotic genome. Fems Yeast Research. 18. PMID 29648592 DOI: 10.1093/Femsyr/Foy032  0.364
2018 Abrams JM, Arkhipova IR, Belfort M, Boeke JD, Joan Curcio M, Faulkner GJ, Goodier JL, Lehmann R, Levin HL. Meeting report: mobile genetic elements and genome plasticity 2018. Mobile Dna. 9: 21. PMID 30211913 DOI: 10.1186/S13100-018-0126-3  0.362
2018 Luo J, Sun X, Cormack BP, Boeke JD. Karyotype engineering by chromosome fusion leads to reproductive isolation in yeast. Nature. PMID 30069047 DOI: 10.1038/S41586-018-0374-X  0.368
2018 Sun X, Wang X, Tang Z, Grivainis M, Kahler D, Yun C, Mita P, Fenyö D, Boeke JD. Transcription factor profiling reveals molecular choreography and key regulators of human retrotransposon expression. Proceedings of the National Academy of Sciences of the United States of America. PMID 29802231 DOI: 10.1073/Pnas.1722565115  0.745
2018 Hoggard TA, Chang F, Perry KR, Subramanian S, Kenworthy J, Chueng J, Shor E, Hyland EM, Boeke JD, Weinreich M, Fox CA. Yeast heterochromatin regulators Sir2 and Sir3 act directly at euchromatic DNA replication origins. Plos Genetics. 14: e1007418. PMID 29795547 DOI: 10.1371/Journal.Pgen.1007418  0.731
2018 Wu Y, Zhu RY, Mitchell LA, Ma L, Liu R, Zhao M, Jia B, Xu H, Li YX, Yang ZM, Ma Y, Li X, Liu H, Liu D, Xiao WH, ... ... Boeke JD, et al. In vitro DNA SCRaMbLE. Nature Communications. 9: 1935. PMID 29789594 DOI: 10.1038/S41467-018-03743-6  0.386
2018 Shen MJ, Wu Y, Yang K, Li Y, Xu H, Zhang H, Li BZ, Li X, Xiao WH, Zhou X, Mitchell LA, Bader JS, Yuan Y, Boeke JD. Heterozygous diploid and interspecies SCRaMbLEing. Nature Communications. 9: 1934. PMID 29789590 DOI: 10.1038/S41467-018-04157-0  0.608
2018 Jia B, Wu Y, Li BZ, Mitchell LA, Liu H, Pan S, Wang J, Zhang HR, Jia N, Li B, Shen M, Xie ZX, Liu D, Cao YX, Li X, ... ... Boeke JD, et al. Precise control of SCRaMbLE in synthetic haploid and diploid yeast. Nature Communications. 9: 1933. PMID 29789567 DOI: 10.1038/S41467-018-03084-4  0.349
2018 Mita P, Boeke JD. Cycling to Maintain and Improve Fitness: Line-1 Modes of Nuclear Entrance and Retrotransposition. Slas Discovery : Advancing Life Sciences R & D. 2472555218767842. PMID 29724131 DOI: 10.1177/2472555218767842  0.703
2018 Venkataraman A, Yang K, Irizarry J, Mackiewicz M, Mita P, Kuang Z, Xue L, Ghosh D, Liu S, Ramos P, Hu S, Bayron Kain D, Keegan S, Saul R, Colantonio S, ... ... Boeke JD, et al. A toolbox of immunoprecipitation-grade monoclonal antibodies to human transcription factors. Nature Methods. PMID 29638227 DOI: 10.1038/Nmeth.4632  0.762
2018 Kalva S, Boeke JD, Mita P. Gibson Deletion: a novel application of isothermal in vitro recombination. Biological Procedures Online. 20: 2. PMID 29375275 DOI: 10.1186/S12575-018-0068-7  0.72
2018 Zhao Y, Boeke JD. Construction of Designer Selectable Marker Deletions with CRISPR-Cas9 Toolbox in Schizosaccharomyces pombe and Optimized Design of Common Entry Vectors. G3 (Bethesda, Md.). PMID 29321167 DOI: 10.1534/G3.117.300363  0.419
2018 Mita P, Wudzinska A, Sun X, Andrade J, Nayak S, Kahler DJ, Badri S, LaCava J, Ueberheide B, Yun CY, Fenyö D, Boeke JD. LINE-1 protein localization and functional dynamics during the cell cycle. Elife. 7. PMID 29309036 DOI: 10.7554/Elife.30058  0.734
2018 Taylor MS, Altukhov I, Molloy KR, Mita P, Jiang H, Adney EM, Wudzinska A, Badri S, Ischenko D, Eng G, Burns KH, Fenyö D, Chait BT, Alexeev D, Rout MP, ... Boeke JD, et al. Dissection of affinity captured LINE-1 macromolecular complexes. Elife. 7. PMID 29309035 DOI: 10.7554/Elife.30094  0.733
2018 Chuang J, Boeke JD, Mitchell LA. Coupling Yeast Golden Gate and VEGAS for Efficient Assembly of the Violacein Pathway in Saccharomyces cerevisiae. Methods in Molecular Biology (Clifton, N.J.). 1671: 211-225. PMID 29170962 DOI: 10.1007/978-1-4939-7295-1_14  0.358
2017 Truong DM, Boeke JD. Resetting the Yeast Epigenome with Human Nucleosomes. Cell. 171: 1508-1519.e13. PMID 29198523 DOI: 10.1016/J.Cell.2017.10.043  0.381
2017 Xie ZX, Mitchell LA, Liu HM, Li BZ, Liu D, Agmon N, Wu Y, Li X, Zhou X, Li B, Xiao WH, Ding MZ, Wang Y, Yuan YJ, Boeke JD. Rapid and Efficient CRISPR/Cas9-Based Mating-Type Switching of Saccharomyces cerevisiae. G3 (Bethesda, Md.). PMID 29150593 DOI: 10.1534/G3.117.300347  0.348
2017 Jiang S, Liu Y, Wang A, Qin Y, Luo M, Wu Q, Boeke JD, Dai J. Construction of Comprehensive Dosage-Matching Core Histone Mutant Libraries for Saccharomyces cerevisiae. Genetics. PMID 29084817 DOI: 10.1534/Genetics.117.300450  0.409
2017 Jiang S, Liu Y, Xu C, Wang Y, Gong J, Shen Y, Wu Q, Boeke JD, Dai J. Dissecting Nucleosome Function with a Comprehensive Histone H2A and H2B Mutant Library. G3 (Bethesda, Md.). PMID 29038170 DOI: 10.1534/G3.117.300252  0.362
2017 Newkirk SJ, Lee S, Grandi FC, Gaysinskaya V, Rosser JM, Vanden Berg N, Hogarth CA, Marchetto MCN, Muotri AR, Griswold MD, Ye P, Bortvin A, Gage FH, Boeke JD, An W. Intact piRNA pathway prevents L1 mobilization in male meiosis. Proceedings of the National Academy of Sciences of the United States of America. PMID 28630288 DOI: 10.1073/Pnas.1701069114  0.36
2017 Kannan M, Li J, Fritz SE, Husarek KE, Sanford JC, Sullivan TL, Tiwary PK, An W, Boeke JD, Symer DE. Dynamic silencing of somatic L1 retrotransposon insertions reflects the developmental and cellular contexts of their genomic integration. Mobile Dna. 8: 8. PMID 28491150 DOI: 10.1186/S13100-017-0091-2  0.389
2017 Payer LM, Steranka JP, Yang WR, Kryatova M, Medabalimi S, Ardeljan D, Liu C, Boeke JD, Avramopoulos D, Burns KH. Structural variants caused by Alu insertions are associated with risks for many human diseases. Proceedings of the National Academy of Sciences of the United States of America. PMID 28465436 DOI: 10.1073/Pnas.1704117114  0.328
2017 Richardson SM, Mitchell LA, Stracquadanio G, Yang K, Dymond JS, DiCarlo JE, Lee D, Huang CL, Chandrasegaran S, Cai Y, Boeke JD, Bader JS. Design of a synthetic yeast genome. Science (New York, N.Y.). 355: 1040-1044. PMID 28280199 DOI: 10.1126/Science.Aaf4557  0.805
2017 Mitchell LA, Wang A, Stracquadanio G, Kuang Z, Wang X, Yang K, Richardson S, Martin JA, Zhao Y, Walker R, Luo Y, Dai H, Dong K, Tang Z, Yang Y, ... ... Boeke JD, et al. Synthesis, debugging, and effects of synthetic chromosome consolidation: synVI and beyond. Science (New York, N.Y.). 355. PMID 28280154 DOI: 10.1126/Science.Aaf4831  0.772
2017 Shen Y, Wang Y, Chen T, Gao F, Gong J, Abramczyk D, Walker R, Zhao H, Chen S, Liu W, Luo Y, Müller CA, Paul-Dubois-Taine A, Alver B, Stracquadanio G, ... ... Boeke JD, et al. Deep functional analysis of synII, a 770-kilobase synthetic yeast chromosome. Science (New York, N.Y.). 355. PMID 28280153 DOI: 10.1126/Science.Aaf4791  0.765
2017 Wu Y, Li BZ, Zhao M, Mitchell LA, Xie ZX, Lin QH, Wang X, Xiao WH, Wang Y, Zhou X, Liu H, Li X, Ding MZ, Liu D, Zhang L, ... ... Boeke JD, et al. Bug mapping and fitness testing of chemically synthesized chromosome X. Science (New York, N.Y.). 355. PMID 28280152 DOI: 10.1126/Science.Aaf4706  0.765
2017 Xie ZX, Li BZ, Mitchell LA, Wu Y, Qi X, Jin Z, Jia B, Wang X, Zeng BX, Liu HM, Wu XL, Feng Q, Zhang WZ, Liu W, Ding MZ, ... ... Boeke JD, et al. "Perfect" designer chromosome V and behavior of a ring derivative. Science (New York, N.Y.). 355. PMID 28280151 DOI: 10.1126/Science.Aaf4704  0.765
2017 Mercy G, Mozziconacci J, Scolari VF, Yang K, Zhao G, Thierry A, Luo Y, Mitchell LA, Shen M, Shen Y, Walker R, Zhang W, Wu Y, Xie ZX, Luo Z, ... ... Boeke JD, et al. 3D organization of synthetic and scrambled chromosomes. Science (New York, N.Y.). 355. PMID 28280150 DOI: 10.1126/Science.Aaf4597  0.639
2017 Zhang W, Zhao G, Luo Z, Lin Y, Wang L, Guo Y, Wang A, Jiang S, Jiang Q, Gong J, Wang Y, Hou S, Huang J, Li T, Qin Y, ... ... Boeke JD, et al. Engineering the ribosomal DNA in a megabase synthetic chromosome. Science (New York, N.Y.). 355. PMID 28280149 DOI: 10.1126/Science.Aaf3981  0.642
2017 Agmon N, Tang Z, Yang K, Sutter B, Ikushima S, Cai Y, Caravelli K, Martin JA, Sun X, Choi WJ, Zhang A, Stracquadanio G, Hao H, Tu BP, Fenyo D, ... ... Boeke JD, et al. Low escape-rate genome safeguards with minimal molecular perturbation of Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America. PMID 28174266 DOI: 10.1073/Pnas.1621250114  0.734
2017 Newman HA, Meluh PB, Lu J, Vidal J, Carson C, Lagesse E, Gray JJ, Boeke JD, Matunis MJ. A high throughput mutagenic analysis of yeast sumo structure and function. Plos Genetics. 13: e1006612. PMID 28166236 DOI: 10.1371/Journal.Pgen.1006612  0.342
2017 Tang Z, Steranka JP, Ma S, Grivainis M, Rodić N, Huang CR, Shih IM, Wang TL, Boeke JD, Fenyö D, Burns KH. Human transposon insertion profiling: Analysis, visualization and identification of somatic LINE-1 insertions in ovarian cancer. Proceedings of the National Academy of Sciences of the United States of America. PMID 28096347 DOI: 10.1073/Pnas.1619797114  0.393
2016 Ikushima S, Boeke JD. New Orthogonal Transcriptional Switches Derived from Tet Repressor Homologues for Saccharomyces cerevisiae Regulated by 2,4-Diacetylphloroglucinol and Other Ligands. Acs Synthetic Biology. PMID 28005347 DOI: 10.1021/Acssynbio.6B00205  0.349
2016 Kuang Z, Boeke JD, Canzar S. The dynamic landscape of fission yeast meiosis alternative-splice isoforms. Genome Research. PMID 27856494 DOI: 10.1101/Gr.208041.116  0.365
2016 Achanta P, Steranka JP, Tang Z, Rodić N, Sharma R, Yang WR, Ma S, Grivainis M, Huang CR, Schneider AM, Gallia GL, Riggins GJ, Quinones-Hinojosa A, Fenyö D, Boeke JD, et al. Somatic retrotransposition is infrequent in glioblastomas. Mobile Dna. 7: 22. PMID 27843500 DOI: 10.1186/S13100-016-0077-5  0.324
2016 Zampella JG, Rodić N, Yang WR, Huang CR, Welch J, Gnanakkan VP, Cornish TC, Boeke JD, Burns KH. A map of mobile DNA insertions in the NCI-60 human cancer cell panel. Mobile Dna. 7: 20. PMID 27807467 DOI: 10.1186/S13100-016-0078-4  0.807
2016 Mita P, Savas JN, Briggs EM, Ha S, Gnanakkan V, Yates JR, Robins DM, David G, Boeke JD, Garabedian MJ, Logan SK. URI Regulates KAP1 Phosphorylation and Transcriptional Repression Via PP2A Phosphatase in Prostate Cancer Cells. The Journal of Biological Chemistry. PMID 27780869 DOI: 10.1074/Jbc.M116.741660  0.781
2016 Mita P, Lhakhang T, Li D, Eichinger DJ, Fenyo D, Boeke JD. Fluorescence ImmunoPrecipitation (FLIP): a Novel Assay for High-Throughput IP. Biological Procedures Online. 18: 16. PMID 27528826 DOI: 10.1186/S12575-016-0046-X  0.676
2016 Ardeljan D, Taylor MS, Burns KH, Boeke JD, Espey MG, Woodhouse EC, Howcroft TK. Meeting Report: The Role of the Mobilome in Cancer. Cancer Research. 76: 4316-9. PMID 27527733 DOI: 10.1158/0008-5472.Can-15-3421  0.365
2016 Stracquadanio G, Yang K, Boeke JD, Bader JS. BioPartsDB: a synthetic biology workflow web-application for education and research. Bioinformatics (Oxford, England). PMID 27412090 DOI: 10.1093/Bioinformatics/Btw394  0.731
2016 Boeke JD, Church G, Hessel A, Kelley NJ, Arkin A, Cai Y, Carlson R, Chakravarti A, Cornish VW, Holt L, Isaacs FJ, Kuiken T, Lajoie M, Lessor T, Lunshof J, et al. The Genome Project-Write. Science (New York, N.Y.). PMID 27256881 DOI: 10.1126/Science.Aaf6850  0.313
2016 Taylor MS, LaCava J, Dai L, Mita P, Burns KH, Rout MP, Boeke JD. Characterization of L1-Ribonucleoprotein Particles. Methods in Molecular Biology (Clifton, N.J.). 1400: 311-38. PMID 26895062 DOI: 10.1007/978-1-4939-3372-3_20  0.703
2016 Mita P, Boeke JD. How retrotransposons shape genome regulation. Current Opinion in Genetics & Development. 37: 90-100. PMID 26855260 DOI: 10.1016/J.Gde.2016.01.001  0.739
2016 Sliva A, Kuang Z, Meluh PB, Boeke JD. Barcode Sequencing Screen Identifies SUB1 as a Regulator of Yeast Pheromone Inducible Genes. G3 (Bethesda, Md.). PMID 26837954 DOI: 10.1534/G3.115.026757  0.387
2015 Yang K, Stracquadanio G, Luo J, Boeke JD, Bader JS. BioPartsBuilder: a synthetic biology tool for combinatorial assembly of biological parts. Bioinformatics (Oxford, England). PMID 26568632 DOI: 10.1093/Bioinformatics/Btv664  0.743
2015 Shen Y, Stracquadanio G, Wang Y, Yang K, Mitchell LA, Xue Y, Cai Y, Chen T, Dymond JS, Kang K, Gong J, Zeng X, Zhang Y, Li Y, Feng Q, ... ... Boeke JD, et al. SCRaMbLE generates designed combinatorial stochastic diversity in synthetic chromosomes. Genome Research. PMID 26566658 DOI: 10.1101/Gr.193433.115  0.819
2015 Boeke JD, Fenyo D. Much Ado about Zero. Cell. 163: 534-5. PMID 26496595 DOI: 10.1016/J.Cell.2015.10.033  0.368
2015 Rodić N, Steranka JP, Makohon-Moore A, Moyer A, Shen P, Sharma R, Kohutek ZA, Huang CR, Ahn D, Mita P, Taylor MS, Barker NJ, Hruban RH, Iacobuzio-Donahue CA, Boeke JD, et al. Retrotransposon insertions in the clonal evolution of pancreatic ductal adenocarcinoma. Nature Medicine. PMID 26259033 DOI: 10.1038/Nm.3919  0.719
2015 Ikushima S, Zhao Y, Boeke JD. Development of a Tightly Controlled Off Switch for Saccharomyces cerevisiae Regulated by Camphor, a Low-Cost Natural Product. G3 (Bethesda, Md.). PMID 26206350 DOI: 10.1534/G3.114.012765  0.332
2015 Sen P, Dang W, Donahue G, Dai J, Dorsey J, Cao X, Liu W, Cao K, Perry R, Lee JY, Wasko BM, Carr DT, He C, Robison B, Wagner J, ... ... Boeke JD, et al. H3K36 methylation promotes longevity by enhancing transcriptional fidelity. Genes & Development. 29: 1362-1376. PMID 26159996 DOI: 10.1101/Gad.263707.115  0.324
2015 Mitchell LA, Phillips NA, Lafont A, Martin JA, Cutting R, Boeke JD. qPCRTag Analysis - A High Throughput, Real Time PCR Assay for Sc2.0 Genotyping. Journal of Visualized Experiments : Jove. PMID 26067760 DOI: 10.3791/52941  0.41
2015 Mitchell LA, Chuang J, Agmon N, Khunsriraksakul C, Phillips NA, Cai Y, Truong DM, Veerakumar A, Wang Y, Mayorga M, Blomquist P, Sadda P, Trueheart J, Boeke JD. Versatile genetic assembly system (VEGAS) to assemble pathways for expression in S. cerevisiae. Nucleic Acids Research. PMID 25956652 DOI: 10.1093/Nar/Gkv466  0.374
2015 Simoneau A, Delgoshaie N, Celic I, Dai J, Abshiru N, Costantino S, Thibault P, Boeke JD, Verreault A, Wurtele H. Interplay between histone H3 lysine 56 deacetylation and chromatin modifiers in response to DNA damage. Genetics. 200: 185-205. PMID 25786853 DOI: 10.1534/Genetics.115.175919  0.782
2015 Agmon N, Mitchell LA, Cai Y, Ikushima S, Chuang J, Zheng A, Choi WJ, Martin JA, Caravelli K, Stracquadanio G, Boeke JD. Yeast Golden Gate (yGG) for the Efficient Assembly of S. cerevisiae Transcription Units. Acs Synthetic Biology. 4: 853-9. PMID 25756291 DOI: 10.1021/Sb500372Z  0.696
2015 Cai Y, Agmon N, Choi WJ, Ubide A, Stracquadanio G, Caravelli K, Hao H, Bader JS, Boeke JD. Intrinsic biocontainment: multiplex genome safeguards combine transcriptional and recombinational control of essential yeast genes. Proceedings of the National Academy of Sciences of the United States of America. 112: 1803-8. PMID 25624482 DOI: 10.1073/Pnas.1424704112  0.754
2015 Lin Q, Jia B, Mitchell LA, Luo J, Yang K, Zeller KI, Zhang W, Xu Z, Stracquadanio G, Bader JS, Boeke JD, Yuan YJ. RADOM, an efficient in vivo method for assembling designed DNA fragments up to 10 kb long in Saccharomyces cerevisiae. Acs Synthetic Biology. 4: 213-20. PMID 24895839 DOI: 10.1021/Sb500241E  0.763
2014 Gorbunova V, Boeke JD, Helfand SL, Sedivy JM. Human Genomics. Sleeping dogs of the genome. Science (New York, N.Y.). 346: 1187-8. PMID 25477445 DOI: 10.1126/Science.Aaa3177  0.306
2014 Mitchell LA, Boeke JD. Circular permutation of a synthetic eukaryotic chromosome with the telomerator. Proceedings of the National Academy of Sciences of the United States of America. 111: 17003-10. PMID 25378705 DOI: 10.1073/Pnas.1414399111  0.403
2014 Kuang Z, Cai L, Zhang X, Ji H, Tu BP, Boeke JD. High-temporal-resolution view of transcription and chromatin states across distinct metabolic states in budding yeast. Nature Structural & Molecular Biology. 21: 854-63. PMID 25173176 DOI: 10.1038/Nsmb.2881  0.341
2014 Dai L, LaCava J, Taylor MS, Boeke JD. Expression and detection of LINE-1 ORF-encoded proteins. Mobile Genetic Elements. 4: e29319. PMID 25054082 DOI: 10.4161/Mge.29319  0.361
2014 Belfort M, Marraffini L, Macfarlan T, Boeke J, Slotkin K, Malik H, Maquat L. Mobile DNA: an evolving field. Mobile Dna. 5: 16. PMID 24904692 DOI: 10.1186/1759-8753-5-16  0.323
2014 Shimizu A, Nakatani Y, Nakamura T, Jinno-Oue A, Ishikawa O, Boeke JD, Takeuchi Y, Hoshino H. Characterisation of cytoplasmic DNA complementary to non-retroviral RNA viruses in human cells. Scientific Reports. 4: 5074. PMID 24875540 DOI: 10.1038/Srep05074  0.365
2014 Annaluru N, Muller H, Mitchell LA, Ramalingam S, Stracquadanio G, Richardson SM, Dymond JS, Kuang Z, Scheifele LZ, Cooper EM, Cai Y, Zeller K, Agmon N, Han JS, Hadjithomas M, ... ... Boeke JD, et al. Total synthesis of a functional designer eukaryotic chromosome. Science (New York, N.Y.). 344: 55-8. PMID 24674868 DOI: 10.1126/Science.1249252  0.81
2014 Annaluru N, Muller H, Mitchell LA, Ramalingam S, Stracquadanio G, Richardson SM, Dymond JS, Kuang Z, Scheifele LZ, Cooper EM, Cai Y, Zeller K, Agmon N, Han JS, Hadjithomas M, ... ... Boeke JD, et al. Total synthesis of a functional designer eukaryotic chromosome (Science (2014) 344, 6179 (55-58)) Science. 344. DOI: 10.1126/Science.1254596  0.775
2013 Gnanakkan VP, Jaffe AE, Dai L, Fu J, Wheelan SJ, Levitsky HI, Boeke JD, Burns KH. TE-array--a high throughput tool to study transposon transcription. Bmc Genomics. 14: 869. PMID 24325565 DOI: 10.1186/1471-2164-14-869  0.803
2013 Taylor MS, Lacava J, Mita P, Molloy KR, Huang CR, Li D, Adney EM, Jiang H, Burns KH, Chait BT, Rout MP, Boeke JD, Dai L. Affinity proteomics reveals human host factors implicated in discrete stages of LINE-1 retrotransposition. Cell. 155: 1034-48. PMID 24267889 DOI: 10.1016/J.Cell.2013.10.021  0.739
2013 Teng X, Dayhoff-Brannigan M, Cheng WC, Gilbert CE, Sing CN, Diny NL, Wheelan SJ, Dunham MJ, Boeke JD, Pineda FJ, Hardwick JM. Genome-wide consequences of deleting any single gene. Molecular Cell. 52: 485-94. PMID 24211263 DOI: 10.1016/J.Molcel.2013.09.026  0.399
2013 Lin YY, Kiihl S, Suhail Y, Liu SY, Chou YH, Kuang Z, Lu JY, Khor CN, Lin CL, Bader JS, Irizarry R, Boeke JD. Retraction: Functional dissection of lysine deacetylases reveals that HDAC1 and p300 regulate AMPK Nature. 503: 146-146. PMID 24201285 DOI: 10.1038/Nature12727  0.539
2013 Ng TM, Lenstra TL, Duggan N, Jiang S, Ceto S, Holstege FC, Dai J, Boeke JD, Biggins S. Kinetochore function and chromosome segregation rely on critical residues in histones H3 and H4 in budding yeast. Genetics. 195: 795-807. PMID 24037263 DOI: 10.1534/Genetics.113.152082  0.386
2013 Purzycka KJ, Garfinkel DJ, Boeke JD, Le Grice SF. Influence of RNA structural elements on Ty1 retrotransposition. Mobile Genetic Elements. 3: e25060. PMID 23914314 DOI: 10.4161/Mge.25060  0.342
2013 O'Donnell KA, An W, Schrum CT, Wheelan SJ, Boeke JD. Controlled insertional mutagenesis using a LINE-1 (ORFeus) gene-trap mouse model. Proceedings of the National Academy of Sciences of the United States of America. 110: E2706-13. PMID 23818630 DOI: 10.1073/Pnas.1302504110  0.338
2013 Mitchell LA, Cai Y, Taylor M, Noronha AM, Chuang J, Dai L, Boeke JD. Multichange isothermal mutagenesis: a new strategy for multiple site-directed mutations in plasmid DNA. Acs Synthetic Biology. 2: 473-7. PMID 23654272 DOI: 10.1021/Sb300131W  0.352
2013 Lu JY, Lin YY, Boeke JD, Zhu H. Using functional proteome microarrays to study protein lysine acetylation. Methods in Molecular Biology (Clifton, N.J.). 981: 151-65. PMID 23381860 DOI: 10.1007/978-1-62703-305-3_12  0.559
2013 Huang Q, Purzycka KJ, Lusvarghi S, Li D, Legrice SF, Boeke JD. Retrotransposon Ty1 RNA contains a 5'-terminal long-range pseudoknot required for efficient reverse transcription. Rna (New York, N.Y.). 19: 320-32. PMID 23329695 DOI: 10.1261/Rna.035535.112  0.373
2013 Yang WR, Mills EW, Rodic N, Ingolia NT, Boeke JD, Levitsky HI, Burns KH. What transposable elements are differentially translated in lung cancer? Journal For Immunotherapy of Cancer. 1. DOI: 10.1186/2051-1426-1-S1-P139  0.319
2013 Zampella JG, Yang WR, Rodric N, Huang CRL, Welch J, Gnanakkan VP, Cornish TC, Boeke JD, Burns KH. Abstract 3148: Mapping mobile DNAs in human cancer cell lines. Cancer Research. 73: 3148-3148. DOI: 10.1158/1538-7445.Am2013-3148  0.815
2013 Pan X, Ye P, Yuan DS, Wang X, Bader JS, Boeke JD. XErratum: A DNA integrity network in the yeast Saccharomyces cerevisiae (Cell (2006) 124 (1069-1081)) Cell. 153. DOI: 10.1016/J.Cell.2013.04.054  0.567
2012 Huang CR, Burns KH, Boeke JD. Active transposition in genomes. Annual Review of Genetics. 46: 651-75. PMID 23145912 DOI: 10.1146/Annurev-Genet-110711-155616  0.386
2012 Dai L, Taylor MS, O'Donnell KA, Boeke JD. Poly(A) binding protein C1 is essential for efficient L1 retrotransposition and affects L1 RNP formation. Molecular and Cellular Biology. 32: 4323-36. PMID 22907758 DOI: 10.1128/Mcb.06785-11  0.31
2012 Burns KH, Boeke JD. Human transposon tectonics. Cell. 149: 740-52. PMID 22579280 DOI: 10.1016/J.Cell.2012.04.019  0.359
2012 Dymond J, Boeke J. The Saccharomyces cerevisiae SCRaMbLE system and genome minimization. Bioengineered Bugs. 3: 168-71. PMID 22572789 DOI: 10.4161/Bbug.19543  0.805
2012 Darby MM, Serebreni L, Pan X, Boeke JD, Corden JL. The Saccharomyces cerevisiae Nrd1-Nab3 transcription termination pathway acts in opposition to Ras signaling and mediates response to nutrient depletion. Molecular and Cellular Biology. 32: 1762-75. PMID 22431520 DOI: 10.1128/Mcb.00050-12  0.331
2012 Xie Z, Dai J, Dai L, Tan M, Cheng Z, Wu Y, Boeke JD, Zhao Y. Lysine succinylation and lysine malonylation in histones. Molecular & Cellular Proteomics : McP. 11: 100-7. PMID 22389435 DOI: 10.1074/Mcp.M111.015875  0.318
2012 Cooper EM, Müller H, Chandrasegaran S, Bader JS, Boeke JD. The Build-a-Genome course. Methods in Molecular Biology (Clifton, N.J.). 852: 273-83. PMID 22328440 DOI: 10.1007/978-1-61779-564-0_20  0.551
2012 Richardson SM, Liu S, Boeke JD, Bader JS. Design-A-Gene with GeneDesign. Methods in Molecular Biology (Clifton, N.J.). 852: 235-47. PMID 22328438 DOI: 10.1007/978-1-61779-564-0_18  0.56
2012 Muller H, Annaluru N, Schwerzmann JW, Richardson SM, Dymond JS, Cooper EM, Bader JS, Boeke JD, Chandrasegaran S. Assembling large DNA segments in yeast. Methods in Molecular Biology (Clifton, N.J.). 852: 133-50. PMID 22328431 DOI: 10.1007/978-1-61779-564-0_11  0.81
2012 Annaluru N, Muller H, Ramalingam S, Kandavelou K, London V, Richardson SM, Dymond JS, Cooper EM, Bader JS, Boeke JD, Chandrasegaran S. Assembling DNA fragments by USER fusion. Methods in Molecular Biology (Clifton, N.J.). 852: 77-95. PMID 22328427 DOI: 10.1007/978-1-61779-564-0_7  0.794
2012 Lin YY, Kiihl S, Suhail Y, Liu SY, Chou YH, Kuang Z, Lu JY, Khor CN, Lin CL, Bader JS, Irizarry R, Boeke JD. Functional dissection of lysine deacetylases reveals that HDAC1 and p300 regulate AMPK. Nature. 482: 251-5. PMID 22318606 DOI: 10.1038/Nature10804  0.696
2012 Mularoni L, Zhou Y, Bowen T, Gangadharan S, Wheelan SJ, Boeke JD. Retrotransposon Ty1 integration targets specifically positioned asymmetric nucleosomal DNA segments in tRNA hotspots. Genome Research. 22: 693-703. PMID 22219510 DOI: 10.1101/Gr.129460.111  0.395
2012 Dai J, Boeke JD. Strain construction and screening methods for a yeast histone H3/H4 mutant library. Methods in Molecular Biology (Clifton, N.J.). 833: 1-14. PMID 22183584 DOI: 10.1007/978-1-61779-477-3_1  0.322
2012 Yarrington RM, Richardson SM, Lisa Huang CR, Boeke JD. Novel transcript truncating function of Rap1p revealed by synthetic codon-optimized Ty1 retrotransposon. Genetics. 190: 523-35. PMID 22135353 DOI: 10.1534/Genetics.111.136648  0.378
2011 Lu JY, Lin YY, Zhu H, Chuang LM, Boeke JD. Protein acetylation and aging. Aging. 3: 911-2. PMID 22067362  0.447
2011 Dymond JS, Richardson SM, Coombes CE, Babatz T, Muller H, Annaluru N, Blake WJ, Schwerzmann JW, Dai J, Lindstrom DL, Boeke AC, Gottschling DE, Chandrasegaran S, Bader JS, Boeke JD. Synthetic chromosome arms function in yeast and generate phenotypic diversity by design. Nature. 477: 471-6. PMID 21918511 DOI: 10.1038/Nature10403  0.831
2011 Lu JY, Lin YY, Sheu JC, Wu JT, Lee FJ, Chen Y, Lin MI, Chiang FT, Tai TY, Berger SL, Zhao Y, Tsai KS, Zhu H, Chuang LM, Boeke JD. Acetylation of yeast AMPK controls intrinsic aging independently of caloric restriction. Cell. 146: 969-79. PMID 21906795 DOI: 10.1016/J.Cell.2011.07.044  0.55
2011 Hyland EM, Molina H, Poorey K, Jie C, Xie Z, Dai J, Qian J, Bekiranov S, Auble DT, Pandey A, Boeke JD. An evolutionarily 'young' lysine residue in histone H3 attenuates transcriptional output in Saccharomyces cerevisiae. Genes & Development. 25: 1306-19. PMID 21685365 DOI: 10.1101/Gad.2050311  0.702
2011 Dai L, Huang Q, Boeke JD. Effect of reverse transcriptase inhibitors on LINE-1 and Ty1 reverse transcriptase activities and on LINE-1 retrotransposition. Bmc Biochemistry. 12: 18. PMID 21545744 DOI: 10.1186/1471-2091-12-18  0.359
2011 An W, Dai L, Niewiadomska AM, Yetil A, O'Donnell KA, Han JS, Boeke JD. Characterization of a synthetic human LINE-1 retrotransposon ORFeus-Hs. Mobile Dna. 2: 2. PMID 21320307 DOI: 10.1186/1759-8753-2-2  0.603
2011 Xie Y, Rosser JM, Thompson TL, Boeke JD, An W. Characterization of L1 retrotransposition with high-throughput dual-luciferase assays. Nucleic Acids Research. 39: e16. PMID 21071410 DOI: 10.1093/Nar/Gkq1076  0.355
2010 Barnett BP, Hwang Y, Taylor MS, Kirchner H, Pfluger PT, Bernard V, Lin YY, Bowers EM, Mukherjee C, Song WJ, Longo PA, Leahy DJ, Hussain MA, Tschöp MH, Boeke JD, et al. Glucose and weight control in mice with a designed ghrelin O-acyltransferase inhibitor. Science (New York, N.Y.). 330: 1689-92. PMID 21097901 DOI: 10.1126/Science.1196154  0.723
2010 Ben-Aroya S, Pan X, Boeke JD, Hieter P. Making temperature-sensitive mutants. Methods in Enzymology. 470: 181-204. PMID 20946811 DOI: 10.1016/S0076-6879(10)70008-2  0.346
2010 Dai J, Hyland EM, Norris A, Boeke JD. Yin and Yang of histone H2B roles in silencing and longevity: a tale of two arginines. Genetics. 186: 813-28. PMID 20713692 DOI: 10.1534/Genetics.110.118489  0.753
2010 Huang CR, Schneider AM, Lu Y, Niranjan T, Shen P, Robinson MA, Steranka JP, Valle D, Civin CI, Wang T, Wheelan SJ, Ji H, Boeke JD, Burns KH. Mobile interspersed repeats are major structural variants in the human genome. Cell. 141: 1171-82. PMID 20602999 DOI: 10.1016/J.Cell.2010.05.026  0.399
2010 Matecic M, Smith DL, Pan X, Maqani N, Bekiranov S, Boeke JD, Smith JS. A microarray-based genetic screen for yeast chronological aging factors. Plos Genetics. 6: e1000921. PMID 20421943 DOI: 10.1371/Journal.Pgen.1000921  0.366
2010 Lee PA, Dymond JS, Scheifele LZ, Richardson SM, Foelber KJ, Boeke JD, Bader JS. CLONEQC: lightweight sequence verification for synthetic biology. Nucleic Acids Research. 38: 2617-23. PMID 20211841 DOI: 10.1093/Nar/Gkq093  0.79
2010 Richardson SM, Nunley PW, Yarrington RM, Boeke JD, Bader JS. GeneDesign 3.0 is an updated synthetic biology toolkit. Nucleic Acids Research. 38: 2603-6. PMID 20211837 DOI: 10.1093/Nar/Gkq143  0.52
2010 Norris A, Boeke JD. Silent information regulator 3: the Goldilocks of the silencing complex. Genes & Development. 24: 115-22. PMID 20080949 DOI: 10.1101/Gad.1865510  0.611
2010 Luo J, Xu X, Hall H, Hyland EM, Boeke JD, Hazbun T, Kuo MH. Histone h3 exerts a key function in mitotic checkpoint control. Molecular and Cellular Biology. 30: 537-49. PMID 19917722 DOI: 10.1128/Mcb.00980-09  0.696
2010 Richardson SM, Olson BS, Dymond JS, Burns R, Chandrasegaran S, Boeke JD, Shehu A, Bader JS. Automated design of assemblable, modular, synthetic chromosomes Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6068: 280-289. DOI: 10.1007/978-3-642-14403-5_30  0.79
2009 Scheifele LZ, Cost GJ, Zupancic ML, Caputo EM, Boeke JD. Retrotransposon overdose and genome integrity. Proceedings of the National Academy of Sciences of the United States of America. 106: 13927-32. PMID 19666515 DOI: 10.1073/Pnas.0906552106  0.725
2009 An W, Davis ES, Thompson TL, O'Donnell KA, Lee CY, Boeke JD. Plug and play modular strategies for synthetic retrotransposons. Methods (San Diego, Calif.). 49: 227-35. PMID 19481606 DOI: 10.1016/J.Ymeth.2009.05.013  0.376
2009 Ivics Z, Li MA, Mátés L, Boeke JD, Nagy A, Bradley A, Izsvák Z. Transposon-mediated genome manipulation in vertebrates. Nature Methods. 6: 415-22. PMID 19478801 DOI: 10.1038/Nmeth.1332  0.386
2009 Lin YY, Lu JY, Zhang J, Walter W, Dang W, Wan J, Tao SC, Qian J, Zhao Y, Boeke JD, Berger SL, Zhu H. Protein acetylation microarray reveals that NuA4 controls key metabolic target regulating gluconeogenesis. Cell. 136: 1073-84. PMID 19303850 DOI: 10.1016/J.Cell.2009.01.033  0.56
2009 Huang H, Maertens AM, Hyland EM, Dai J, Norris A, Boeke JD, Bader JS. HistoneHits: a database for histone mutations and their phenotypes. Genome Research. 19: 674-81. PMID 19218532 DOI: 10.1101/Gr.083402.108  0.799
2009 Dymond JS, Scheifele LZ, Richardson S, Lee P, Chandrasegaran S, Bader JS, Boeke JD. Teaching synthetic biology, bioinformatics and engineering to undergraduates: the interdisciplinary Build-a-Genome course. Genetics. 181: 13-21. PMID 19015540 DOI: 10.1534/Genetics.108.096784  0.807
2009 Ivics Z, Li MA, Mátés L, Boeke JD, Nagy A, Bradley A, Izsvák Z. Erratum: Transposon-mediated genome manipulation in vertebrates (Nature Methods (2009) vol. 6 (415-422)) Nature Methods. 6. DOI: 10.1038/Nmeth0709-546B  0.346
2008 Norris A, Bianchet MA, Boeke JD. Compensatory interactions between Sir3p and the nucleosomal LRS surface imply their direct interaction. Plos Genetics. 4: e1000301. PMID 19079580 DOI: 10.1371/Journal.Pgen.1000301  0.564
2008 Qi Y, Suhail Y, Lin YY, Boeke JD, Bader JS. Finding friends and enemies in an enemies-only network: a graph diffusion kernel for predicting novel genetic interactions and co-complex membership from yeast genetic interactions. Genome Research. 18: 1991-2004. PMID 18832443 DOI: 10.1101/Gr.077693.108  0.652
2008 Dai J, Hyland EM, Yuan DS, Huang H, Bader JS, Boeke JD. Probing nucleosome function: a highly versatile library of synthetic histone H3 and H4 mutants. Cell. 134: 1066-78. PMID 18805098 DOI: 10.1016/J.Cell.2008.07.019  0.774
2008 Scheifele LZ, Boeke JD. From the shards of a shattered genome, diversity. Proceedings of the National Academy of Sciences of the United States of America. 105: 11593-4. PMID 18701721 DOI: 10.1073/Pnas.0805812105  0.408
2008 O'Donnell KA, Burns KH, Boeke JD. A descent into the nuage: the maelstrom of transposon control. Developmental Cell. 15: 179-81. PMID 18694557 DOI: 10.1016/J.Devcel.2008.07.016  0.303
2008 Han Y, Lin YB, An W, Xu J, Yang HC, O'Connell K, Dordai D, Boeke JD, Siliciano JD, Siliciano RF. Orientation-dependent regulation of integrated HIV-1 expression by host gene transcriptional readthrough. Cell Host & Microbe. 4: 134-46. PMID 18692773 DOI: 10.1016/J.Chom.2008.06.008  0.535
2008 Lin YY, Qi Y, Lu JY, Pan X, Yuan DS, Zhao Y, Bader JS, Boeke JD. A comprehensive synthetic genetic interaction network governing yeast histone acetylation and deacetylation. Genes & Development. 22: 2062-74. PMID 18676811 DOI: 10.1101/Gad.1679508  0.701
2008 An W, Han JS, Schrum CM, Maitra A, Koentgen F, Boeke JD. Conditional activation of a single-copy L1 transgene in mice by Cre. Genesis (New York, N.Y. : 2000). 46: 373-83. PMID 18615728 DOI: 10.1002/Dvg.20407  0.575
2008 Celic I, Verreault A, Boeke JD. Histone H3 K56 hyperacetylation perturbs replisomes and causes DNA damage. Genetics. 179: 1769-84. PMID 18579506 DOI: 10.1534/Genetics.108.088914  0.773
2008 Wheelan SJ, Martínez Murillo F, Boeke JD. The incredible shrinking world of DNA microarrays. Molecular Biosystems. 4: 726-32. PMID 18563246 DOI: 10.1039/B706237K  0.381
2008 Li F, Dong J, Pan X, Oum JH, Boeke JD, Lee SE. Microarray-based genetic screen defines SAW1, a gene required for Rad1/Rad10-dependent processing of recombination intermediates. Molecular Cell. 30: 325-35. PMID 18471978 DOI: 10.1016/J.Molcel.2008.02.028  0.383
2008 Ben-Aroya S, Coombes C, Kwok T, O'Donnell KA, Boeke JD, Hieter P. Toward a comprehensive temperature-sensitive mutant repository of the essential genes of Saccharomyces cerevisiae. Molecular Cell. 30: 248-58. PMID 18439903 DOI: 10.1016/J.Molcel.2008.02.021  0.376
2008 Meluh PB, Pan X, Yuan DS, Tiffany C, Chen O, Sookhai-Mahadeo S, Wang X, Peyser BD, Irizarry R, Spencer FA, Boeke JD. Analysis of genetic interactions on a genome-wide scale in budding yeast: diploid-based synthetic lethality analysis by microarray. Methods in Molecular Biology (Clifton, N.J.). 416: 221-47. PMID 18392971 DOI: 10.1007/978-1-59745-321-9_15  0.4
2008 O'Donnell KA, Boeke JD. Domesticated DNA transposon proteins mediate retrotransposon control. Cell Research. 18: 331-3. PMID 18311163 DOI: 10.1038/Cr.2008.34  0.429
2008 Huang Z, Sucgang RS, Lin YY, Shi X, Boeke JD, Pan X. Plasmid-chromosome shuffling for non-deletion alleles in yeast. Nature Methods. 5: 167-9. PMID 18193055 DOI: 10.1038/Nmeth.1173  0.628
2008 Pan X, Yuan D, Ye P, Bader J, Boeke JD. Response to Dr Stephen Cooper's 'On the use of metaphor to understand, explain, or rationalize redundant genes in yeast' Fems Yeast Research. 8: 349-350. DOI: 10.1111/J.1567-1364.2008.00357.X  0.551
2007 Sulek M, Yarrington R, McGibbon G, Boeke JD, Junop M. A critical role for the C-terminus of Nej1 protein in Lif1p association, DNA binding and non-homologous end-joining. Dna Repair. 6: 1805-18. PMID 17765666 DOI: 10.1016/J.Dnarep.2007.07.009  0.351
2007 Zurita-Martinez SA, Puria R, Pan X, Boeke JD, Cardenas ME. Efficient Tor signaling requires a functional class C Vps protein complex in Saccharomyces cerevisiae. Genetics. 176: 2139-50. PMID 17565946 DOI: 10.1534/Genetics.107.072835  0.313
2007 Yarrington RM, Chen J, Bolton EC, Boeke JD. Mn2+ suppressor mutations and biochemical communication between Ty1 reverse transcriptase and RNase H domains. Journal of Virology. 81: 9004-12. PMID 17537863 DOI: 10.1128/Jvi.02502-06  0.703
2007 Pan X, Yuan DS, Ooi SL, Wang X, Sookhai-Mahadeo S, Meluh P, Boeke JD. dSLAM analysis of genome-wide genetic interactions in Saccharomyces cerevisiae. Methods (San Diego, Calif.). 41: 206-21. PMID 17189863 DOI: 10.1016/J.Ymeth.2006.07.033  0.732
2006 An W, Han JS, Wheelan SJ, Davis ES, Coombes CE, Ye P, Triplett C, Boeke JD. Active retrotransposition by a synthetic L1 element in mice. Proceedings of the National Academy of Sciences of the United States of America. 103: 18662-7. PMID 17124176 DOI: 10.1073/Pnas.0605300103  0.579
2006 Wheelan SJ, Scheifele LZ, Martínez-Murillo F, Irizarry RA, Boeke JD. Transposon insertion site profiling chip (TIP-chip). Proceedings of the National Academy of Sciences of the United States of America. 103: 17632-7. PMID 17101968 DOI: 10.1073/Pnas.0605450103  0.403
2006 Wheelan SJ, Martínez-Murillo F, Irizarry RA, Boeke JD. Stacking the deck: double-tiled DNA microarrays. Nature Methods. 3: 903-7. PMID 17060914 DOI: 10.1038/Nmeth951  0.349
2006 Fry CJ, Norris A, Cosgrove M, Boeke JD, Peterson CL. The LRS and SIN domains: two structurally equivalent but functionally distinct nucleosomal surfaces required for transcriptional silencing. Molecular and Cellular Biology. 26: 9045-59. PMID 17015465 DOI: 10.1128/Mcb.00248-06  0.594
2006 Takahashi H, McCaffery JM, Irizarry RA, Boeke JD. Nucleocytosolic acetyl-coenzyme a synthetase is required for histone acetylation and global transcription. Molecular Cell. 23: 207-17. PMID 16857587 DOI: 10.1016/J.Molcel.2006.05.040  0.311
2006 Celic I, Masumoto H, Griffith WP, Meluh P, Cotter RJ, Boeke JD, Verreault A. The sirtuins hst3 and Hst4p preserve genome integrity by controlling histone h3 lysine 56 deacetylation. Current Biology : Cb. 16: 1280-9. PMID 16815704 DOI: 10.1016/J.Cub.2006.06.023  0.775
2006 Sauve AA, Wolberger C, Schramm VL, Boeke JD. The biochemistry of sirtuins. Annual Review of Biochemistry. 75: 435-65. PMID 16756498 DOI: 10.1146/Annurev.Biochem.74.082803.133500  0.307
2006 Kastenmayer JP, Ni L, Chu A, Kitchen LE, Au WC, Yang H, Carter CD, Wheeler D, Davis RW, Boeke JD, Snyder MA, Basrai MA. Functional genomics of genes with small open reading frames (sORFs) in S. cerevisiae. Genome Research. 16: 365-73. PMID 16510898 DOI: 10.1101/Gr.4355406  0.408
2006 Gandhi TK, Zhong J, Mathivanan S, Karthick L, Chandrika KN, Mohan SS, Sharma S, Pinkert S, Nagaraju S, Periaswamy B, Mishra G, Nandakumar K, Shen B, Deshpande N, Nayak R, ... ... Boeke JD, et al. Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets. Nature Genetics. 38: 285-93. PMID 16501559 DOI: 10.1038/Ng1747  0.57
2006 Pan X, Ye P, Yuan DS, Wang X, Bader JS, Boeke JD. A DNA integrity network in the yeast Saccharomyces cerevisiae. Cell. 124: 1069-81. PMID 16487579 DOI: 10.1016/J.Cell.2005.12.036  0.604
2006 Richardson SM, Wheelan SJ, Yarrington RM, Boeke JD. GeneDesign: rapid, automated design of multikilobase synthetic genes. Genome Research. 16: 550-6. PMID 16481661 DOI: 10.1101/Gr.4431306  0.366
2006 Ooi SL, Pan X, Peyser BD, Ye P, Meluh PB, Yuan DS, Irizarry RA, Bader JS, Spencer FA, Boeke JD. Global synthetic-lethality analysis and yeast functional profiling. Trends in Genetics : Tig. 22: 56-63. PMID 16309778 DOI: 10.1016/J.Tig.2005.11.003  0.782
2005 Ye P, Peyser BD, Pan X, Boeke JD, Spencer FA, Bader JS. Gene function prediction from congruent synthetic lethal interactions in yeast. Molecular Systems Biology. 1: 2005.0026. PMID 16729061 DOI: 10.1038/Msb4100034  0.599
2005 An W, Boeke JD. Transposon technology and vertebrate functional genomics. Genome Biology. 6: 361. PMID 16356279 DOI: 10.1186/Gb-2005-6-12-361  0.318
2005 Hyland EM, Cosgrove MS, Molina H, Wang D, Pandey A, Cottee RJ, Boeke JD. Insights into the role of histone H3 and histone H4 core modifiable residues in Saccharomyces cerevisiae. Molecular and Cellular Biology. 25: 10060-70. PMID 16260619 DOI: 10.1128/Mcb.25.22.10060-10070.2005  0.7
2005 Peyser BD, Irizarry RA, Tiffany CW, Chen O, Yuan DS, Boeke JD, Spencer FA. Improved statistical analysis of budding yeast TAG microarrays revealed by defined spike-in pools. Nucleic Acids Research. 33: e140. PMID 16166654 DOI: 10.1093/Nar/Gni138  0.389
2005 Wheelan SJ, Aizawa Y, Han JS, Boeke JD. Gene-breaking: a new paradigm for human retrotransposon-mediated gene evolution. Genome Research. 15: 1073-8. PMID 16024818 DOI: 10.1101/Gr.3688905  0.608
2005 Han JS, Boeke JD. LINE-1 retrotransposons: modulators of quantity and quality of mammalian gene expression? Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 27: 775-84. PMID 16015595 DOI: 10.1002/Bies.20257  0.617
2005 Yuan DS, Pan X, Ooi SL, Peyser BD, Spencer FA, Irizarry RA, Boeke JD. Improved microarray methods for profiling the Yeast Knockout strain collection. Nucleic Acids Research. 33: e103. PMID 15994458 DOI: 10.1093/Nar/Gni105  0.713
2005 Bachman N, Gelbart ME, Tsukiyama T, Boeke JD. TFIIIB subunit Bdp1p is required for periodic integration of the Ty1 retrotransposon and targeting of Isw2p to S. cerevisiae tDNAs. Genes & Development. 19: 955-64. PMID 15833918 DOI: 10.1101/Gad.1299105  0.78
2005 Gelbart ME, Bachman N, Delrow J, Boeke JD, Tsukiyama T. Genome-wide identification of Isw2 chromatin-remodeling targets by localization of a catalytically inactive mutant. Genes & Development. 19: 942-54. PMID 15833917 DOI: 10.1101/Gad.1298905  0.771
2005 Brannon AR, Maresca JA, Boeke JD, Basrai MA, McBride AA. Reconstitution of papillomavirus E2-mediated plasmid maintenance in Saccharomyces cerevisiae by the Brd4 bromodomain protein. Proceedings of the National Academy of Sciences of the United States of America. 102: 2998-3003. PMID 15710895 DOI: 10.1073/Pnas.0407818102  0.383
2005 Bolton EC, Coombes C, Eby Y, Cardell M, Boeke JD. Identification and characterization of critical cis-acting sequences within the yeast Ty1 retrotransposon. Rna (New York, N.Y.). 11: 308-22. PMID 15661848 DOI: 10.1261/Rna.7860605  0.729
2005 Coombes CE, Boeke JD. An evaluation of detection methods for large lariat RNAs. Rna (New York, N.Y.). 11: 323-31. PMID 15661842 DOI: 10.1261/Rna.7124405  0.344
2005 Hyland EM, Cosgrove MS, Molina H, Wang D, Pandey A, Cotter RJ, Boeke JD. Insights into the Role of Histone H3 and Histone H4 Core Modifiable Residues in Saccharomyces cerevisiae Molecular and Cellular Biology. 25: 11193-11193. DOI: 10.1128/Mcb.25.24.11193.2005  0.655
2004 Pan X, Yuan DS, Xiang D, Wang X, Sookhai-Mahadeo S, Bader JS, Hieter P, Spencer F, Boeke JD. A robust toolkit for functional profiling of the yeast genome. Molecular Cell. 16: 487-96. PMID 15525520 DOI: 10.1016/J.Molcel.2004.09.035  0.629
2004 Cosgrove MS, Boeke JD, Wolberger C. Regulated nucleosome mobility and the histone code. Nature Structural & Molecular Biology. 11: 1037-43. PMID 15523479 DOI: 10.1038/Nsmb851  0.306
2004 Maxwell PH, Coombes C, Kenny AE, Lawler JF, Boeke JD, Curcio MJ. Ty1 mobilizes subtelomeric Y' elements in telomerase-negative Saccharomyces cerevisiae survivors. Molecular and Cellular Biology. 24: 9887-98. PMID 15509791 DOI: 10.1128/Mcb.24.22.9887-9898.2004  0.424
2004 Arévalo-Rodríguez M, Pan X, Boeke JD, Heitman J. FKBP12 controls aspartate pathway flux in Saccharomyces cerevisiae to prevent toxic intermediate accumulation. Eukaryotic Cell. 3: 1287-96. PMID 15470257 DOI: 10.1128/Ec.3.5.1287-1296.2004  0.481
2004 Bachman N, Eby Y, Boeke JD. Local definition of Ty1 target preference by long terminal repeats and clustered tRNA genes. Genome Research. 14: 1232-47. PMID 15197163 DOI: 10.1101/Gr.2052904  0.779
2004 Han JS, Boeke JD. A highly active synthetic mammalian retrotransposon. Nature. 429: 314-8. PMID 15152256 DOI: 10.1038/Nature02535  0.608
2004 Han JS, Szak ST, Boeke JD. Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes. Nature. 429: 268-74. PMID 15152245 DOI: 10.1038/Nature02536  0.606
2004 Starai VJ, Takahashi H, Boeke JD, Escalante-Semerena JC. A link between transcription and intermediary metabolism: a role for Sir2 in the control of acetyl-coenzyme A synthetase. Current Opinion in Microbiology. 7: 115-9. PMID 15063846 DOI: 10.1016/J.Mib.2004.02.005  0.348
2004 Perlman PS, Boeke JD. Molecular biology. Ring around the retroelement. Science (New York, N.Y.). 303: 182-4. PMID 14716001 DOI: 10.1126/Science.1093514  0.4
2003 Irizarry RA, Ooi SL, Wu Z, Boeke JD. Use of mixture models in a microarray-based screening procedure for detecting differentially represented yeast mutants. Statistical Applications in Genetics and Molecular Biology. 2: Article1. PMID 16646779 DOI: 10.2202/1544-6115.1002  0.698
2003 Ooi SL, Shoemaker DD, Boeke JD. DNA helicase gene interaction network defined using synthetic lethality analyzed by microarray. Nature Genetics. 35: 277-86. PMID 14566339 DOI: 10.1038/Ng1258  0.734
2003 Boeke JD. The unusual phylogenetic distribution of retrotransposons: a hypothesis. Genome Research. 13: 1975-83. PMID 12952870 DOI: 10.1101/Gr.1392003  0.391
2003 Szak ST, Pickeral OK, Landsman D, Boeke JD. Identifying related L1 retrotransposons by analyzing 3' transduced sequences. Genome Biology. 4: R30. PMID 12734010 DOI: 10.1186/Gb-2003-4-5-R30  0.767
2003 Bolton EC, Boeke JD. Transcriptional interactions between yeast tRNA genes, flanking genes and Ty elements: a genomic point of view. Genome Research. 13: 254-63. PMID 12566403 DOI: 10.1101/Gr.612203  0.733
2002 Starai VJ, Celic I, Cole RN, Boeke JD, Escalante-Semerena JC. Sir2-dependent activation of acetyl-CoA synthetase by deacetylation of active lysine. Science (New York, N.Y.). 298: 2390-2. PMID 12493915 DOI: 10.1126/Science.1077650  0.76
2002 Cost GJ, Feng Q, Jacquier A, Boeke JD. Human L1 element target-primed reverse transcription in vitro. The Embo Journal. 21: 5899-910. PMID 12411507 DOI: 10.1093/Emboj/Cdf592  0.685
2002 Avalos JL, Celic I, Muhammad S, Cosgrove MS, Boeke JD, Wolberger C. Structure of a Sir2 enzyme bound to an acetylated p53 peptide. Molecular Cell. 10: 523-35. PMID 12408821 DOI: 10.1016/S1097-2765(02)00628-7  0.751
2002 Onyango P, Celic I, McCaffery JM, Boeke JD, Feinberg AP. SIRT3, a human SIR2 homologue, is an NAD-dependent deacetylase localized to mitochondria. Proceedings of the National Academy of Sciences of the United States of America. 99: 13653-8. PMID 12374852 DOI: 10.1073/Pnas.222538099  0.789
2002 Szak ST, Pickeral OK, Makalowski W, Boguski MS, Landsman D, Boeke JD. Molecular archeology of L1 insertions in the human genome. Genome Biology. 3: research0052. PMID 12372140 DOI: 10.1186/Gb-2002-3-10-Research0052  0.771
2002 Park JH, Cosgrove MS, Youngman E, Wolberger C, Boeke JD. A core nucleosome surface crucial for transcriptional silencing. Nature Genetics. 32: 273-9. PMID 12244315 DOI: 10.1038/Ng982  0.333
2002 Symer DE, Connelly C, Szak ST, Caputo EM, Cost GJ, Parmigiani G, Boeke JD. Human l1 retrotransposition is associated with genetic instability in vivo. Cell. 110: 327-38. PMID 12176320 DOI: 10.1016/S0092-8674(02)00839-5  0.693
2002 Giaever G, Chu AM, Ni L, Connelly C, Riles L, Véronneau S, Dow S, Lucau-Danila A, Anderson K, André B, Arkin AP, Astromoff A, El-Bakkoury M, Bangham R, Benito R, ... ... Boeke JD, et al. Functional profiling of the Saccharomyces cerevisiae genome. Nature. 418: 387-91. PMID 12140549 DOI: 10.1038/Nature00935  0.741
2002 Smith JS, Avalos J, Celic I, Muhammad S, Wolberger C, Boeke JD. SIR2 family of NAD(+)-dependent protein deacetylases. Methods in Enzymology. 353: 282-300. PMID 12078503 DOI: 10.1016/S0076-6879(02)53056-1  0.734
2002 Bachman N, Biery MC, Boeke JD, Craig NL. Tn7-mediated mutagenesis of Saccharomyces cerevisiae genomic DNA in vitro Methods in Enzymology. 350: 230-247. PMID 12073315 DOI: 10.1016/S0076-6879(02)50966-6  0.792
2002 Bolton EC, Mildvan AS, Boeke JD. Inhibition of reverse transcription in vivo by elevated manganese ion concentration. Molecular Cell. 9: 879-89. PMID 11983178 DOI: 10.1016/S1097-2765(02)00495-1  0.707
2002 Sandmeier JJ, Celic I, Boeke JD, Smith JS. Telomeric and rDNA silencing in Saccharomyces cerevisiae are dependent on a nuclear NAD(+) salvage pathway. Genetics. 160: 877-89. PMID 11901108  0.775
2002 Lawler JF, Merkulov GV, Boeke JD. A nucleocapsid functionality contained within the amino terminus of the Ty1 protease that is distinct and separable from proteolytic activity. Journal of Virology. 76: 346-54. PMID 11739699 DOI: 10.1128/Jvi.76.1.346-354.2002  0.323
2001 Sauve AA, Celic I, Avalos J, Deng H, Boeke JD, Schramm VL. Chemistry of gene silencing: the mechanism of NAD+-dependent deacetylation reactions. Biochemistry. 40: 15456-63. PMID 11747420 DOI: 10.1021/Bi011858J  0.738
2001 Ooi SL, Shoemaker DD, Boeke JD. A DNA microarray-based genetic screen for nonhomologous end-joining mutants in Saccharomyces cerevisiae. Science (New York, N.Y.). 294: 2552-6. PMID 11701889 DOI: 10.1126/Science.1065672  0.741
2001 Ooi SL, Dann C, Nam K, Leahy DJ, Damha MJ, Boeke JD. RNA lariat debranching enzyme. Methods in Enzymology. 342: 233-48. PMID 11586896 DOI: 10.1016/S0076-6879(01)42548-1  0.693
2001 Lawler JF, Merkulov GV, Boeke JD. Frameshift signal transplantation and the unambiguous analysis of mutations in the yeast retrotransposon Ty1 Gag-Pol overlap region. Journal of Virology. 75: 6769-75. PMID 11435555 DOI: 10.1128/Jvi.75.15.6769-6775.2001  0.349
2001 Loewith R, Smith JS, Meijer M, Williams TJ, Bachman N, Boeke JD, Young D. Pho23 is associated with the Rpd3 histone deacetylase and is required for its normal function in regulation of gene expression and silencing in Saccharomyces cerevisiae. The Journal of Biological Chemistry. 276: 24068-74. PMID 11306585 DOI: 10.1074/Jbc.M102176200  0.755
2001 Smith JS, Boeke JD. Transcription. Is S phase important for transcriptional silencing? Science (New York, N.Y.). 291: 608-9. PMID 11158666 DOI: 10.1126/Science.291.5504.608  0.347
2001 Carbrey JM, Bonhivers M, Boeke JD, Agre P. Aquaporins in Saccharomyces: Characterization of a second functional water channel protein. Proceedings of the National Academy of Sciences of the United States of America. 98: 1000-5. PMID 11158584 DOI: 10.1073/Pnas.98.3.1000  0.312
2001 Wei W, Gilbert N, Ooi SL, Lawler JF, Ostertag EM, Kazazian HH, Boeke JD, Moran JV. Human L1 retrotransposition: cis preference versus trans complementation. Molecular and Cellular Biology. 21: 1429-39. PMID 11158327 DOI: 10.1128/Mcb.21.4.1429-1439.2001  0.713
2001 Cost GJ, Golding A, Schlissel MS, Boeke JD. Target DNA chromatinization modulates nicking by L1 endonuclease. Nucleic Acids Research. 29: 573-7. PMID 11139628 DOI: 10.1093/Nar/29.2.573  0.713
2000 Gupta K, Ott D, Hope TJ, Siliciano RF, Boeke JD. A human nuclear shuttling protein that interacts with human immunodeficiency virus type 1 matrix is packaged into virions. Journal of Virology. 74: 11811-24. PMID 11090181 DOI: 10.1128/Jvi.74.24.11811-11824.2000  0.528
2000 Kim JW, Kim HC, Kim GM, Yang JM, Boeke JD, Nam K. Human RNA lariat debranching enzyme cDNA complements the phenotypes of Saccharomyces cerevisiae dbr1 and Schizosaccharomyces pombe dbr1 mutants Nucleic Acids Research. 28: 3666-3673. PMID 10982890 DOI: 10.1093/Nar/28.18.3666  0.354
2000 Smith JS, Brachmann CB, Celic I, Kenna MA, Muhammad S, Starai VJ, Avalos JL, Escalante-Semerena JC, Grubmeyer C, Wolberger C, Boeke JD. A phylogenetically conserved NAD+-dependent protein deacetylase activity in the Sir2 protein family. Proceedings of the National Academy of Sciences of the United States of America. 97: 6658-63. PMID 10841563 DOI: 10.1073/Pnas.97.12.6658  0.786
2000 Pickeral OK, Makałowski W, Boguski MS, Boeke JD. Frequent human genomic DNA transduction driven by LINE-1 retrotransposition. Genome Research. 10: 411-5. PMID 10779482 DOI: 10.1101/Gr.10.4.411  0.774
1999 Freeman-Cook LL, Sherman JM, Brachmann CB, Allshire RC, Boeke JD, Pillus L. The Schizosaccharomyces pombe hst4(+) gene is a SIR2 homologue with silencing and centromeric functions. Molecular Biology of the Cell. 10: 3171-86. PMID 10512858 DOI: 10.1091/Mbc.10.10.3171  0.412
1999 Sherman JM, Stone EM, Freeman-Cook LL, Brachmann CB, Boeke JD, Pillus L. The conserved core of a human SIR2 homologue functions in yeast silencing. Molecular Biology of the Cell. 10: 3045-59. PMID 10473645 DOI: 10.1091/Mbc.10.9.3045  0.403
1999 Winzeler EA, Shoemaker DD, Astromoff A, Liang H, Anderson K, Andre B, Bangham R, Benito R, Boeke JD, Bussey H, Chu AM, Connelly C, Davis K, Dietrich F, Dow SW, et al. Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science (New York, N.Y.). 285: 901-6. PMID 10436161 DOI: 10.1126/Science.285.5429.901  0.63
1999 Ke N, Gao X, Keeney JB, Boeke JD, Voytas DF. The yeast retrotransposon Ty5 uses the anticodon stem-loop of the initiator methionine tRNA as a primer for reverse transcription. Rna (New York, N.Y.). 5: 929-38. PMID 10411136 DOI: 10.1017/S1355838299990015  0.345
1999 Boeke JD, Pickeral OK. Retroshuffling the genomic deck. Nature. 398: 108-9, 111. PMID 10086353 DOI: 10.1038/18118  0.783
1999 Smith JS, Caputo E, Boeke JD. A genetic screen for ribosomal DNA silencing defects identifies multiple DNA replication and chromatin-modulating factors Molecular and Cellular Biology. 19: 3184-3197. PMID 10082585 DOI: 10.1128/Mcb.19.4.3184  0.408
1998 Cost GJ, Boeke JD. Targeting of human retrotransposon integration is directed by the specificity of the L1 endonuclease for regions of unusual DNA structure. Biochemistry. 37: 18081-93. PMID 9922177 DOI: 10.1021/Bi981858S  0.698
1998 Merkulov GV, Boeke JD. Libraries of green fluorescent protein fusions generated by transposition in vitro Gene. 222: 213-222. PMID 9831655 DOI: 10.1016/S0378-1119(98)00503-4  0.351
1998 Hoff EF, Levin HL, Boeke JD. Schizosaccharomyces pombe retrotransposon Tf2 mobilizes primarily through homologous cDNA recombination. Molecular and Cellular Biology. 18: 6839-52. PMID 9774697 DOI: 10.1128/Mcb.18.11.6839  0.353
1998 Ooi SL, Samarsky DA, Fournier MJ, Boeke JD. Intronic snoRNA biosynthesis in Saccharomyces cerevisiae depends on the lariat-debranching enzyme: intron length effects and activity of a precursor snoRNA. Rna (New York, N.Y.). 4: 1096-110. PMID 9740128 DOI: 10.1017/S1355838298980785  0.72
1998 Dej KJ, Gerasimova T, Corces VG, Boeke JD. A hotspot for the Drosophila gypsy retroelement in the ovo locus. Nucleic Acids Research. 26: 4019-25. PMID 9705514 DOI: 10.1093/Nar/26.17.4019  0.316
1998 Kim JM, Vanguri S, Boeke JD, Gabriel A, Voytas DF. Transposable elements and genome organization: A comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence Genome Research. 8: 464-478. PMID 9582191 DOI: 10.1101/Gr.8.5.464  0.435
1998 Leng P, Klatte DH, Schumann G, Boeke JD, Steck TL. Skipper, an LTR retrotransposon of Dictyostelium. Nucleic Acids Research. 26: 2008-15. PMID 9518497 DOI: 10.1093/Nar/26.8.2008  0.367
1998 Brachmann CB, Davies A, Cost GJ, Caputo E, Li J, Hieter P, Boeke JD. Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications. Yeast (Chichester, England). 14: 115-32. PMID 9483801 DOI: 10.1002/(Sici)1097-0061(19980130)14:2<115::Aid-Yea204>3.0.Co;2-2  0.698
1998 Feng Q, Schumann G, Boeke JD. Retrotransposon R1Bm endonuclease cleaves the target sequence Proceedings of the National Academy of Sciences of the United States of America. 95: 2083-2088. PMID 9482842 DOI: 10.1073/Pnas.95.5.2083  0.37
1998 Kenna MA, Brachmann CB, Devine SE, Boeke JD. Invading the yeast nucleus: A nuclear localization signal at the C terminus of Ty1 integrase is required for transposition in vivo Molecular and Cellular Biology. 18: 1115-1124. PMID 9448009 DOI: 10.1128/Mcb.18.2.1115  0.348
1997 Lauermann V, Boeke JD. Plus strand strong-stop DNA transfer in yeast Ty retrotransposons Embo Journal. 16: 6603-6612. PMID 9351840 DOI: 10.1093/Emboj/16.21.6603  0.332
1997 Fletcher TM, Soares MA, McPhearson S, Hui H, Wiskerchen M, Muesing MA, Shaw GM, Leavitt AD, Boeke JD, Hahn BH. Complementation of integrase function in HIV-1 virions. The Embo Journal. 16: 5123-38. PMID 9305653 DOI: 10.1093/Emboj/16.16.5123  0.328
1997 Devine SE, Chissoe SL, Eby Y, Wilson RK, Boeke JD. A transposon-based strategy for sequencing repetitive DNA in eukaryotic genomes Genome Research. 7: 551-563. PMID 9149950 DOI: 10.1101/Gr.7.5.551  0.409
1997 Smith JS, Boeke JD. An unusual form of transcriptional silencing in yeast ribosomal DNA. Genes & Development. 11: 241-54. PMID 9009206 DOI: 10.1101/Gad.11.2.241  0.432
1997 Moran JV, Holmes SE, Naas TP, DeBerardinis RJ, Boeke JD, Kazazian HH. High frequency retrotransposition in cultured mammalian cells. Cell. 87: 917-27. PMID 8945518 DOI: 10.1016/S0092-8674(00)81998-4  0.34
1996 Feng Q, Moran JV, Kazazian HH, Boeke JD. Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition Cell. 87: 905-916. PMID 8945517 DOI: 10.1016/S0092-8674(00)81997-2  0.317
1996 Cost GJ, Boeke JD. A useful colony colour phenotype associated with the yeast selectable/counter-selectable marker MET15. Yeast (Chichester, England). 12: 939-41. PMID 8873447 DOI: 10.1002/(Sici)1097-0061(199608)12:10<939::Aid-Yea988>3.0.Co;2-L  0.657
1996 Vidal M, Braun P, Chen E, Boeke JD, Harlow E. Genetic characterization of a mammalian protein-protein interaction domain by using a yeast reverse two-hybrid system. Proceedings of the National Academy of Sciences of the United States of America. 93: 10321-6. PMID 8816798 DOI: 10.1073/Pnas.93.19.10321  0.324
1996 Vidal M, Brachmann RK, Fattaey A, Harlow E, Boeke JD. Reverse two-hybrid and one-hybrid systems to detect dissociation of protein-protein and DNA-protein interactions. Proceedings of the National Academy of Sciences of the United States of America. 93: 10315-20. PMID 8816797 DOI: 10.1073/Pnas.93.19.10315  0.337
1996 Gabriel A, Willems M, Mules EH, Boeke JD. Replication infidelity during a single cycle of Ty1 retrotransposition Proceedings of the National Academy of Sciences of the United States of America. 93: 7767-7771. PMID 8755550 DOI: 10.1073/Pnas.93.15.7767  0.382
1996 Devine SE, Boeke JD. Integration of the yeast retrotransposon Ty1 is targeted to regions upstream of genes transcribed by RNA polymerase III Genes and Development. 10: 620-633. PMID 8598291 DOI: 10.1101/Gad.10.5.620  0.415
1995 Natsoulis G, Seshaiah P, Federspiel MJ, Rein A, Hughes SH, Boeke JD. Targeting of a nuclease to murine leukemia virus capsids inhibits viral multiplication. Proceedings of the National Academy of Sciences of the United States of America. 92: 364-8. PMID 7831291 DOI: 10.1073/Pnas.92.2.364  0.31
1995 Brachmann CB, Sherman JM, Devine SE, Cameron EE, Pillus L, Boeke JD. The SIR2 gene family, conserved from bacteria to humans, functions in silencing, cell cycle progression, and chromosome stability. Genes & Development. 9: 2888-902. PMID 7498786 DOI: 10.1101/Gad.9.23.2888  0.42
1994 Natsoulis G, Winston F, Boeke JD. The SPT10 and SPT21 genes of Saccharomyces cerevisiae. Genetics. 136: 93-105. PMID 8138180  0.503
1994 Braiterman LT, Monokian GM, Eichinger DJ, Merbs SL, Gabriel A, Boeke JD. In-frame linker insertion mutagenesis of yeast transposon Ty1: phenotypic analysis. Gene. 139: 19-26. PMID 8112584 DOI: 10.1016/0378-1119(94)90518-5  0.346
1994 Braiterman LT, Boeke JD. In vitro integration of retrotransposon Ty1: A direct physical assay Molecular and Cellular Biology. 14: 5719-5730. PMID 8065307 DOI: 10.1128/Mcb.14.9.5719  0.334
1994 Dollard C, Ricupero-Hovasse SL, Natsoulis G, Boeke JD, Winston F. SPT10 and SPT21 are required for transcription of particular histone genes in Saccharomyces cerevisiae Molecular and Cellular Biology. 14: 5223-5228. PMID 8035801 DOI: 10.1128/mcb.14.8.5223-5228.1994  0.51
1994 Song SU, Gerasimova T, Kurkulos M, Boeke JD, Corces VG. An env-like protein encoded by a Drosophila retroelement: evidence that gypsy is an infectious retrovirus. Genes & Development. 8: 2046-57. PMID 7958877 DOI: 10.1101/Gad.8.17.2046  0.318
1994 Lauermann V, Boeke JD. The primer tRNA sequence is not inherited during Ty1 retrotransposition Proceedings of the National Academy of Sciences of the United States of America. 91: 9847-9851. PMID 7937903 DOI: 10.1073/Pnas.91.21.9847  0.4
1994 Devine SE, Boeke JD. Efficient integration of artificial transposons into plasmid targets in vitro: A useful tool for DNA mapping, sequencing and genetic analysis Nucleic Acids Research. 22: 3765-3772. PMID 7937090 DOI: 10.1093/Nar/22.18.3765  0.388
1994 Dombroski BA, Feng Q, Mathias SL, Sassaman DM, Scott AF, Kazazian HH, Boeke JD. An in vivo assay for the reverse transcriptase of human retrotransposon L1 in Saccharomyces cerevisiae. Molecular and Cellular Biology. 14: 4485-92. PMID 7516468 DOI: 10.1128/Mcb.14.7.4485  0.348
1993 Ji H, Moore DP, Blomberg MA, Braiterman LT, Voytas DF, Natsoulis G, Boeke JD. Hotspots for unselected Ty1 transposition events on yeast chromosome III are near tRNA genes and LTR sequences Cell. 73: 1007-1018. PMID 8388781 DOI: 10.1016/0092-8674(93)90278-X  0.419
1993 Voytas DF, Boeke JD. Yeast retrotransposons and tRNAs Trends in Genetics. 9: 421-427. PMID 8122309 DOI: 10.1016/0168-9525(93)90105-Q  0.381
1993 Gabriel A, Boeke JD. 14 Retrotransposon Reverse Transcription Cold Spring Harbor Monograph Archive. 23: 275-328. DOI: 10.1101/087969382.23.275  0.397
1993 Levin H, Weaver D, Boeke J. Novel gene expression mechanism in a fission yeast retroelement: Tf1 proteins are derived from a single primary translation product. The Embo Journal. 12: 4885-4895. DOI: 10.1002/J.1460-2075.1993.Tb06178.X  0.357
1992 Chapman KB, Solomon SD, Boeke JD. SDH1, the gene encoding the succinate dehydrogenase flavoprotein subunit from Saccharomyces cerevisiae Gene. 118: 131-136. PMID 1511876 DOI: 10.1016/0378-1119(92)90260-V  0.349
1992 Voytas DF, Boeke JD. Yeast retrotransposon revealed [8] Nature. 358: 717. PMID 1324434 DOI: 10.1038/358717A0  0.365
1992 Chapman KB, Byström AS, Boeke JD. Initiator methionine tRNA is essential for Ty1 transposition in yeast Proceedings of the National Academy of Sciences of the United States of America. 89: 3236-3240. PMID 1314382 DOI: 10.1073/Pnas.89.8.3236  0.347
1992 Levin HL, Boeke JD. Demonstration of retrotransposition of the Tf1 element in fission yeast Embo Journal. 11: 1145-1153. PMID 1312461 DOI: 10.1002/J.1460-2075.1992.Tb05155.X  0.403
1991 Berlin V, Brill JA, Trueheart J, Boeke JD, Fink GR. Genetic screens and selections for cell and nuclear fusion mutants. Methods in Enzymology. 194: 774-92. PMID 2005824 DOI: 10.1016/0076-6879(91)94058-K  0.403
1991 Sikorski RS, Boeke JD. In vitro mutagenesis and plasmid shuffling: from cloned gene to mutant yeast. Methods in Enzymology. 194: 302-18. PMID 2005795 DOI: 10.1016/0076-6879(91)94023-6  0.362
1991 Chapman KB, Boeke JD. Isolation and characterization of the gene encoding yeast debranching enzyme Cell. 65: 483-492. PMID 1850323 DOI: 10.1016/0092-8674(91)90466-C  0.356
1991 Xu H, Boeke JD. Inhibition of Ty1 Transposition by Mating Pheromones in Saccharomyces cerevisiae Molecular and Cellular Biology. 11: 2736-2743. PMID 1850102 DOI: 10.1128/Mcb.11.5.2736  0.323
1991 Mathias SL, Scott AF, Kazazian HH, Boeke JD, Gabriel A. Reverse transcriptase encoded by a human transposable element. Science (New York, N.Y.). 254: 1808-10. PMID 1722352 DOI: 10.1126/Science.1722352  0.353
1991 Gabriel A, Boeke JD. Reverse transcriptase encoded by a retrotransposon from the trypanosomatid Crithidia fasciculata Proceedings of the National Academy of Sciences of the United States of America. 88: 9794-9798. PMID 1719539 DOI: 10.1073/Pnas.88.21.9794  0.386
1991 Natsoulis G, Dollard C, Winston F, Boeke JD. The products of the SPT10 and SPT21 genes of Saccharomyces cerevisiae increase the amplitude of transcriptional regulation at a large number of unlinked loci New Biologist. 3: 1249-1259. PMID 1667480  0.53
1991 Natsoulis G, Boeke JD. New antiviral strategy using capsid-nuclease fusion proteins Nature. 352: 632-635. PMID 1650915 DOI: 10.1038/352632A0  0.344
1990 Levin HL, Weaver DC, Boeke JD. Two related families of retrotransposons from Schizosaccharomyces pombe Molecular and Cellular Biology. 10: 6791-6798. PMID 2174117 DOI: 10.1128/Mcb.10.12.6791  0.379
1990 Xu H, Boeke JD. Host genes that influence transposition in yeast: The abundance of a rare tRNA regulates Ty1 transposition frequency Proceedings of the National Academy of Sciences of the United States of America. 87: 8360-8364. PMID 2172984 DOI: 10.1073/Pnas.87.21.8360  0.371
1990 Hu H, Boeke JD. Localization of Sequences Required in cis for Yeast Ty1 Element Transposition near the Long Terminal Repeats: Analysis of Mini-Ty1 Elements Molecular and Cellular Biology. 10: 2695-2702. PMID 2160583 DOI: 10.1128/Mcb.10.6.2695  0.346
1990 Curcio MJ, Hedge AM, Boeke JD, Garfinkel DJ. Ty RNA levels determine the spectrum of retrotransposition events that activate gene expression in Saccharomyces cerevisiae. Molecular & General Genetics : Mgg. 220: 213-21. PMID 2157950 DOI: 10.1007/Bf00260484  0.346
1990 Gabriel A, Yen TJ, Schwartz DC, Smith CL, Boeke JD, Sollner-Webb B, Cleveland DW. A rapidly rearranging retrotransposon within the miniexon gene locus of Crithidia fasciculata. Molecular and Cellular Biology. 10: 615-24. PMID 2153919 DOI: 10.1128/mcb.10.2.615-624.1990  0.358
1988 Jacobs E, Dewerchin M, Boeke JD. Retrovirus-like vectors for Saccharomyces cerevisiae: integration of foreign genes controlled by efficient promoters into yeast chromosomal DNA. Gene. 67: 259-69. PMID 2844630 DOI: 10.1016/0378-1119(88)90402-7  0.307
1988 Eichinger DJ, Boeke JD. The DNA intermediate in yeast Ty1 element transposition copurifies with virus-like particles: Cell-free Ty1 transposition Cell. 54: 955-966. PMID 2843295 DOI: 10.1016/0092-8674(88)90110-9  0.374
1988 Boeke JD, Eichinger D, Castrillon D, Fink GR. The Saccharomyces cerevisiae genome contains functional and nonfunctional copies of transposon Ty1 Molecular and Cellular Biology. 8: 1432-1442. PMID 2837641 DOI: 10.1128/Mcb.8.4.1432  0.584
1988 Boeke JD, Xu H, Fink GR. A general method for the chromosomal amplification of genes in yeast. Science (New York, N.Y.). 239: 280-2. PMID 2827308 DOI: 10.1126/Science.2827308  0.555
1988 Youngren SD, Boeke JD, Sanders NJ, Garfinkel DJ. Functional organization of the retrotransposon Ty from Saccharomyces cerevisiae: Ty protease is required for transposition. Molecular and Cellular Biology. 8: 1421-31. PMID 2454391 DOI: 10.1128/Mcb.8.4.1421  0.336
1987 Boeke JD, Trueheart J, Natsoulis G, Fink GR. [10] 5-Fluoroorotic acid as a selective agent in yeast molecular genetics Methods in Enzymology. 154: 164-175. PMID 3323810 DOI: 10.1016/0076-6879(87)54076-9  0.489
1987 Trueheart J, Boeke JD, Fink GR. Two genes required for cell fusion during yeast conjugation: evidence for a pheromone-induced surface protein Molecular and Cellular Biology. 7: 2316-2328. PMID 3302672 DOI: 10.1128/Mcb.7.7.2316  0.548
1987 Xu H, Boeke JD. High-frequency deletion between homologous sequences during retrotransposition of Ty elements in Saccharomyces cerevisiae Proceedings of the National Academy of Sciences of the United States of America. 84: 8553-8557. PMID 2825195 DOI: 10.1073/Pnas.84.23.8553  0.392
1986 Boeke JD, Styles CA, Fink GR. Saccharomyces cerevisiae SPT3 gene is required for transposition and transpositional recombination of chromosomal Ty elements Molecular and Cellular Biology. 6: 3575-3581. PMID 3025601 DOI: 10.1128/Mcb.6.11.3575  0.554
1986 Fink GR, Boeke JD, Garfinkel DJ. The mechanism and consequences of retrotransposition Trends in Genetics. 2: 118-123. DOI: 10.1016/0168-9525(86)90200-3  0.583
1985 Davis NG, Boeke JD, Model P. Fine structure of a membrane anchor domain Journal of Molecular Biology. 181: 111-121. PMID 3872373 DOI: 10.1016/0022-2836(85)90329-8  0.581
1985 Boeke JD, Garfinkel DJ, Styles CA, Fink GR. Ty elements transpose through an RNA intermediate Cell. 40: 491-500. PMID 2982495 DOI: 10.1016/0092-8674(85)90197-7  0.536
1985 Garfinkel DJ, Boeke JD, Fink GR. Ty element transposition: Reverse transcriptase and virus-like particles Cell. 42: 507-517. PMID 2411424 DOI: 10.1016/0092-8674(85)90108-4  0.488
1984 Boeke JD, La Croute F, Fink GR. A positive selection for mutants lacking orotidine-5′-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance Mgg Molecular &Amp; General Genetics. 197: 345-346. PMID 6394957 DOI: 10.1007/Bf00330984  0.501
1982 Boeke JD, Model P, Zinder ND. Effects of bacteriophage f1 gene III protein on the host cell membrane Mgg Molecular & General Genetics. 186: 185-192. PMID 6955583 DOI: 10.1007/Bf00331849  0.71
1982 Zinder ND, Boeke JD. The filamentous phage (Ff) as vectors for recombinant DNA- a review Gene. 19: 1-10. PMID 6292041 DOI: 10.1016/0378-1119(82)90183-4  0.58
1982 Boeke JD, Model P. A prokaryotic membrane anchor sequence: Carboxyl terminus of bacteriophage F1 gene III protein retains it in the membrane Proceedings of the National Academy of Sciences of the United States of America. 79: 5200-5204. PMID 6291030 DOI: 10.1073/Pnas.79.17.5200  0.586
1982 Barany F, Boeke JD, Tomasz A. Staphylococcal plasmids that replicate and express erythromycin resistance in both Streptococcus pneumoniae and Escherichia coli Proceedings of the National Academy of Sciences of the United States of America. 79: 2991-2995. PMID 6283551 DOI: 10.1073/Pnas.79.9.2991  0.313
1981 Model P, Russel M, Boeke JD. Filamentous phage assembly: membrane insertion of the major coat protein. Progress in Clinical and Biological Research. 64: 389-400. PMID 7036184  0.555
1981 Boeke JD. One and two codon insertion mutants of bacteriophage f1 Mgg Molecular &Amp; General Genetics. 181: 288-291. PMID 6264271 DOI: 10.1007/Bf00425599  0.376
1980 Moses PB, Boeke JD, Horiuchi K, Zinder ND. Restructuring the bacteriophage f1 genome: expression of gene VIII in the intergenic space. Virology. 104: 267-78. PMID 7395106 DOI: 10.1016/0042-6822(80)90332-3  0.628
1980 Boeke JD, Russel M, Model P. Processing of filamentous phage pre-coat protein. Effect of sequence variations near the signal peptidase cleavage site Journal of Molecular Biology. 144: 103-116. PMID 7230262 DOI: 10.1016/0022-2836(80)90027-3  0.597
1979 Boeke JD, Model P. Molecular basis of the am8H1 lesion in bacteriophage M13 Virology. 96: 299-301. PMID 462808 DOI: 10.1016/0042-6822(79)90198-3  0.611
1979 Boeke JD, Vovis GF, Zinder ND. Insertion mutant of bacteriophage f1 sensitive to EcoRI Proceedings of the National Academy of Sciences of the United States of America. 76: 2699-2702. PMID 379863 DOI: 10.1073/Pnas.76.6.2699  0.582
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