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Nandita R. Garud - Publications

Affiliations: 
University of California, Los Angeles, Los Angeles, CA 
Area:
Evolution in natural populations, Drosophila, microbiome
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20 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Mah JC, Lohmueller KE, Garud N. Inference of the demographic histories and selective effects of human gut commensal microbiota over the course of human history. Biorxiv : the Preprint Server For Biology. PMID 38014007 DOI: 10.1101/2023.11.09.566454  0.39
2023 Pandey D, Harris M, Garud NR, Narasimhan VM. Understanding natural selection in Holocene Europe using multi-locus genotype identity scans. Biorxiv : the Preprint Server For Biology. PMID 37163039 DOI: 10.1101/2023.04.24.538113  0.375
2023 Harris M, Garud NR. Enrichment of Hard Sweeps on the X Chromosome in Drosophila melanogaster. Molecular Biology and Evolution. 40. PMID 36546413 DOI: 10.1093/molbev/msac268  0.326
2021 Garud N. The Tempo and Mode of Adaptation in a Complex Natural Population: the Microbiome. Msystems. 6: e0077921. PMID 34427524 DOI: 10.1128/mSystems.00779-21  0.38
2021 Roodgar M, Good BH, Garud NR, Martis S, Avula M, Zhou W, Lancaster SM, Lee H, Babveyh A, Nesamoney S, Pollard KS, Snyder MP. Longitudinal linked-read sequencing reveals ecological and evolutionary responses of a human gut microbiome during antibiotic treatment. Genome Research. 31: 1433-1446. PMID 34301627 DOI: 10.1101/gr.265058.120  0.354
2021 Shoemaker WR, Chen D, Garud NR. Comparative Population Genetics in the Human Gut Microbiome. Genome Biology and Evolution. PMID 34028530 DOI: 10.1093/gbe/evab116  0.459
2021 Garud NR, Messer PW, Petrov DA. Detection of hard and soft selective sweeps from Drosophila melanogaster population genomic data. Plos Genetics. 17: e1009373. PMID 33635910 DOI: 10.1371/journal.pgen.1009373  0.558
2020 Harpak A, Garud N, Rosenberg NA, Petrov DA, Combs M, Pennings PS, Munshi-South J. Genetic Adaptation in New York City Rats. Genome Biology and Evolution. PMID 33211096 DOI: 10.1093/gbe/evaa247  0.473
2019 Garud NR, Pollard KS. Population Genetics in the Human Microbiome. Trends in Genetics : Tig. PMID 31780057 DOI: 10.1016/J.Tig.2019.10.010  0.467
2019 Garud NR, Good BH, Hallatschek O, Pollard KS. Evolutionary dynamics of bacteria in the gut microbiome within and across hosts. Plos Biology. 17: e3000102. PMID 30673701 DOI: 10.1371/Journal.Pbio.3000102  0.441
2018 Harris AM, Garud NR, DeGiorgio M. Detection and Classification of Hard and Soft Sweeps from Unphased Genotypes by Multilocus Genotype Identity. Genetics. PMID 30315068 DOI: 10.1534/Genetics.118.301502  0.479
2018 Battlay P, Leblanc PB, Green L, Garud NR, Schmidt JM, Fournier-Level A, Robin C. Structural Variants and Selective Sweep Foci Contribute to Insecticide Resistance in the Genetic Reference Panel. G3 (Bethesda, Md.). PMID 30190421 DOI: 10.1534/G3.118.200619  0.483
2016 Nayfach S, Rodriguez-Mueller B, Garud N, Pollard KS. An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography. Genome Research. 26: 1612-1625. PMID 27803195 DOI: 10.1101/Gr.201863.115  0.39
2016 Garud NR, Petrov DA. Elevation of Linkage Disequilibrium Above Neutral Expectations in Ancestral and Derived Populations of Drosophila melanogaster. Genetics. PMID 27098909 DOI: 10.1534/Genetics.115.184002  0.594
2016 Wilson BA, Garud NR, Feder AF, Assaf ZJ, Pennings PS. The population genetics of drug resistance evolution in natural populations of viral, bacterial and eukaryotic pathogens. Molecular Ecology. 25: 42-66. PMID 26578204 DOI: 10.1111/Mec.13474  0.385
2015 Garud NR, Rosenberg NA. Enhancing the mathematical properties of new haplotype homozygosity statistics for the detection of selective sweeps. Theoretical Population Biology. 102: 94-101. PMID 25891325 DOI: 10.1016/J.Tpb.2015.04.001  0.343
2015 Garud NR, Messer PW, Buzbas EO, Petrov DA. Recent selective sweeps in North American Drosophila melanogaster show signatures of soft sweeps. Plos Genetics. 11: e1005004. PMID 25706129 DOI: 10.1371/Journal.Pgen.1005004  0.614
2014 McCoy RC, Garud NR, Kelley JL, Boggs CL, Petrov DA. Genomic inference accurately predicts the timing and severity of a recent bottleneck in a nonmodel insect population. Molecular Ecology. 23: 136-50. PMID 24237665 DOI: 10.1111/Mec.12591  0.575
2011 Molina J, Sikora M, Garud N, Flowers JM, Rubinstein S, Reynolds A, Huang P, Jackson S, Schaal BA, Bustamante CD, Boyko AR, Purugganan MD. Molecular evidence for a single evolutionary origin of domesticated rice. Proceedings of the National Academy of Sciences of the United States of America. 108: 8351-6. PMID 21536870 DOI: 10.1073/Pnas.1104686108  0.422
2011 Molina J, Sikora M, Garud N, Flowers JM, Rubinstein S, Reynolds A, Huang P, Jackson SA, Schaal BA, Bustamante CD, Boyko AR, Purugganan MD. Reply to Ge and Sang: A single origin of domesticated rice Proceedings of the National Academy of Sciences of the United States of America. 108: E756. DOI: 10.1073/Pnas.1112466108  0.346
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