| Year |
Citation |
Score |
| 2024 |
Diamantidis D, Fan WL, Birkner M, Wakeley J. Bursts of coalescence within population pedigrees whenever big families occur. Genetics. PMID 38408329 DOI: 10.1093/genetics/iyae030 |
0.434 |
|
| 2024 |
Rivas-González I, Schierup MH, Wakeley J, Hobolth A. TRAILS: Tree reconstruction of ancestry using incomplete lineage sorting. Plos Genetics. 20: e1010836. PMID 38330138 DOI: 10.1371/journal.pgen.1010836 |
0.311 |
|
| 2023 |
Wakeley J, Fan WL, Koch E, Sunyaev S. Recurrent mutation in the ancestry of a rare variant. Genetics. PMID 36967220 DOI: 10.1093/genetics/iyad049 |
0.406 |
|
| 2022 |
McAvoy A, Wakeley J. Evaluating the structure-coefficient theorem of evolutionary game theory. Proceedings of the National Academy of Sciences of the United States of America. 119: e2119656119. PMID 35787041 DOI: 10.1073/pnas.2119656119 |
0.33 |
|
| 2021 |
Harney É, Patterson N, Reich D, Wakeley J. Assessing the performance of qpAdm: a statistical tool for studying population admixture. Genetics. 217. PMID 33772284 DOI: 10.1093/genetics/iyaa045 |
0.37 |
|
| 2019 |
Edelman NB, Frandsen PB, Miyagi M, Clavijo B, Davey J, Dikow RB, García-Accinelli G, Van Belleghem SM, Patterson N, Neafsey DE, Challis R, Kumar S, Moreira GRP, Salazar C, Chouteau M, ... ... Wakeley J, et al. Genomic architecture and introgression shape a butterfly radiation. Science (New York, N.Y.). 366: 594-599. PMID 31672890 DOI: 10.1126/Science.Aaw2090 |
0.344 |
|
| 2019 |
Palacios JA, Véber A, Cappello L, Wang Z, Wakeley J, Ramachandran S. Bayesian Estimation of Population Size Changes by Sampling Tajima's Trees. Genetics. PMID 31511299 DOI: 10.1534/Genetics.119.302373 |
0.445 |
|
| 2018 |
Altenberg L, Creanza N, Fogarty L, Hadany L, Kolodny O, Laland KN, Lehmann L, Otto SP, Rosenberg NA, Van Cleve J, Wakeley J. Some topics in theoretical population genetics: Editorial commentaries on a selection of Marc Feldman's TPB papers. Theoretical Population Biology. PMID 30593784 DOI: 10.1016/J.Tpb.2018.10.003 |
0.471 |
|
| 2018 |
Wakeley J, Nowak M. A two-player iterated survival game. Theoretical Population Biology. 125: 38-55. PMID 30552911 DOI: 10.1016/J.Tpb.2018.12.001 |
0.307 |
|
| 2018 |
McAvoy A, Fraiman N, Hauert C, Wakeley J, Nowak MA. Public goods games in populations with fluctuating size. Theoretical Population Biology. PMID 29408219 DOI: 10.1016/J.Tpb.2018.01.004 |
0.488 |
|
| 2017 |
King L, Wakeley J, Carmi S. A non-zero variance of Tajima's estimator for two sequences even for infinitely many unlinked loci. Theoretical Population Biology. PMID 28341209 DOI: 10.1016/J.Tpb.2017.03.002 |
0.514 |
|
| 2017 |
Wilton PR, Baduel P, Landon MM, Wakeley J. Population structure and coalescence in pedigrees: Comparisons to the structured coalescent and a framework for inference. Theoretical Population Biology. 115: 1-12. PMID 28143695 DOI: 10.1016/J.Tpb.2017.01.004 |
0.522 |
|
| 2016 |
King L, Wakeley J. Empirical Bayes Estimation of Coalescence Times from Nucleotide Sequence Data. Genetics. PMID 27440864 DOI: 10.1534/Genetics.115.185751 |
0.33 |
|
| 2016 |
Wakeley J, King L, Wilton PR. Effects of the population pedigree on genetic signatures of historical demographic events. Proceedings of the National Academy of Sciences of the United States of America. 113: 7994-8001. PMID 27432946 DOI: 10.1073/Pnas.1601080113 |
0.514 |
|
| 2015 |
Palamara PF, Francioli LC, Wilton PR, Genovese G, Gusev A, Finucane HK, Sankararaman S, Sunyaev SR, de Bakker PI, Wakeley J, Pe'er I, Price AL. Leveraging Distant Relatedness to Quantify Human Mutation and Gene-Conversion Rates. American Journal of Human Genetics. PMID 26581902 DOI: 10.1016/J.Ajhg.2015.10.006 |
0.409 |
|
| 2015 |
Palacios JA, Wakeley J, Ramachandran S. Bayesian Nonparametric Inference of Population Size Changes from Sequential Genealogies. Genetics. 201: 281-304. PMID 26224734 DOI: 10.1534/Genetics.115.177980 |
0.481 |
|
| 2014 |
Carmi S, Wilton PR, Wakeley J, Pe'er I. A renewal theory approach to IBD sharing. Theoretical Population Biology. 97: 35-48. PMID 25149691 DOI: 10.1016/J.Tpb.2014.08.002 |
0.348 |
|
| 2014 |
Pennings PS, Kryazhimskiy S, Wakeley J. Loss and recovery of genetic diversity in adapting populations of HIV. Plos Genetics. 10: e1004000. PMID 24465214 DOI: 10.1371/Journal.Pgen.1004000 |
0.418 |
|
| 2012 |
Arnold B, Bomblies K, Wakeley J. Extending coalescent theory to autotetraploids. Genetics. 192: 195-204. PMID 22714411 DOI: 10.1534/Genetics.112.140582 |
0.512 |
|
| 2012 |
Wakeley J, King L, Low BS, Ramachandran S. Gene genealogies within a fixed pedigree, and the robustness of Kingman's coalescent. Genetics. 190: 1433-45. PMID 22234858 DOI: 10.1534/Genetics.111.135574 |
0.499 |
|
| 2011 |
Maruvka YE, Shnerb NM, Bar-Yam Y, Wakeley J. Recovering population parameters from a single gene genealogy: an unbiased estimator of the growth rate. Molecular Biology and Evolution. 28: 1617-31. PMID 21172828 DOI: 10.1093/Molbev/Msq331 |
0.512 |
|
| 2011 |
Watson RA, Weinreich DM, Wakeley J. Genome structure and the benefit of sex. Evolution; International Journal of Organic Evolution. 65: 523-36. PMID 21029076 DOI: 10.1111/J.1558-5646.2010.01144.X |
0.381 |
|
| 2010 |
Cenik C, Wakeley J. Pacific salmon and the coalescent effective population size. Plos One. 5. PMID 20885947 DOI: 10.1371/Journal.Pone.0013019 |
0.485 |
|
| 2010 |
Shpak M, Wakeley J, Garrigan D, Lewontin RC. A structured coalescent process for seasonally fluctuating populations. Evolution; International Journal of Organic Evolution. 64: 1395-409. PMID 19895551 DOI: 10.1111/J.1558-5646.2009.00891.X |
0.725 |
|
| 2010 |
Garrigan D, Lewontin R, Wakeley J. Measuring the sensitivity of single-locus "neutrality tests" using a direct perturbation approach. Molecular Biology and Evolution. 27: 73-89. PMID 19744997 DOI: 10.1093/Molbev/Msp209 |
0.721 |
|
| 2009 |
Muirhead CA, Wakeley J. Modeling multiallelic selection using a Moran model. Genetics. 182: 1141-57. PMID 19474205 DOI: 10.1534/Genetics.108.089474 |
0.717 |
|
| 2009 |
Antal T, Ohtsuki H, Wakeley J, Taylor PD, Nowak MA. Evolution of cooperation by phenotypic similarity. Proceedings of the National Academy of Sciences of the United States of America. 106: 8597-600. PMID 19416902 DOI: 10.1073/pnas.0902528106 |
0.312 |
|
| 2009 |
Wakeley J, Sargsyan O. The conditional ancestral selection graph with strong balancing selection. Theoretical Population Biology. 75: 355-64. PMID 19371754 DOI: 10.1016/J.Tpb.2009.04.002 |
0.391 |
|
| 2009 |
Eldon B, Wakeley J. Coalescence Times and FST Under a Skewed Offspring Distribution Among Individuals in a Population Genetics. 181: 615-629. PMID 19047415 DOI: 10.1534/Genetics.108.094342 |
0.497 |
|
| 2009 |
Wakeley J, Sargsyan O. Extensions of the coalescent effective population size. Genetics. 181: 341-5. PMID 19001293 DOI: 10.1534/Genetics.108.092460 |
0.455 |
|
| 2008 |
Ramachandran S, Rosenberg NA, Feldman MW, Wakeley J. Population differentiation and migration: coalescence times in a two-sex island model for autosomal and X-linked loci. Theoretical Population Biology. 74: 291-301. PMID 18817799 DOI: 10.1016/J.Tpb.2008.08.003 |
0.398 |
|
| 2008 |
Wakeley J. Conditional Gene Genealogies under Strong Purifying Selection Molecular Biology and Evolution. 25: 2615-2626. PMID 18799710 DOI: 10.1093/Molbev/Msn209 |
0.441 |
|
| 2008 |
Jones DA, Wakeley J. The influence of gene conversion on linkage disequilibrium around a selective sweep. Genetics. 180: 1251-9. PMID 18757941 DOI: 10.1534/Genetics.108.092270 |
0.608 |
|
| 2008 |
Sargsyan O, Wakeley J. A coalescent process with simultaneous multiple mergers for approximating the gene genealogies of many marine organisms. Theoretical Population Biology. 74: 104-14. PMID 18554676 DOI: 10.1016/J.Tpb.2008.04.009 |
0.482 |
|
| 2008 |
Wakeley J. Complex speciation of humans and chimpanzees Nature. 452: 3-4. PMID 18337768 DOI: 10.1038/Nature06805 |
0.316 |
|
| 2008 |
Eldon B, Wakeley J. Linkage disequilibrium under skewed offspring distribution among individuals in a population. Genetics. 178: 1517-1532. PMID 18245371 DOI: 10.1534/Genetics.107.075200 |
0.494 |
|
| 2008 |
Jones D, Wakeley J. Recombination, gene conversion, and identity-by-descent at three loci. Theoretical Population Biology. 73: 264-276. PMID 18215407 DOI: 10.1016/J.Tpb.2007.10.006 |
0.608 |
|
| 2006 |
Wakeley J, Lessard S. Corridors for migration between large subdivided populations, and the structured coalescent. Theoretical Population Biology. 70: 412-20. PMID 16857226 DOI: 10.1016/J.Tpb.2006.06.001 |
0.462 |
|
| 2006 |
Watson RA, Weinreich DM, Wakeley J. Effects of intra-gene fitness interactions on the benefit of sexual recombination. Biochemical Society Transactions. 34: 560-1. PMID 16856860 DOI: 10.1042/Bst0340560 |
0.46 |
|
| 2006 |
Eldon B, Wakeley J. Coalescent processes when the distribution of offspring number among individuals is highly skewed. Genetics. 172: 2621-2633. PMID 16452141 DOI: 10.1534/Genetics.105.052175 |
0.527 |
|
| 2006 |
Matsen FA, Wakeley J. Convergence to the island-model coalescent process in populations with restricted migration. Genetics. 172: 701-8. PMID 16219775 DOI: 10.1534/Genetics.105.047597 |
0.42 |
|
| 2005 |
Wakeley J. The limits of theoretical population genetics. Genetics. 169: 1-7. PMID 15677744 DOI: 10.1093/genetics/169.1.1 |
0.332 |
|
| 2005 |
Slade PF, Wakeley J. The Structured Ancestral Selection Graph and the Many-Demes Limit Genetics. 169: 1117-1131. PMID 15520266 DOI: 10.1534/Genetics.104.032276 |
0.476 |
|
| 2004 |
Wakeley J. Recent Trends in Population Genetics: More Data! More Math! Simple Models? Journal of Heredity. 95: 397-405. PMID 15388767 DOI: 10.1093/Jhered/Esh062 |
0.509 |
|
| 2004 |
Wakeley J, Takahashi T. The many-demes limit for selection and drift in a subdivided population Theoretical Population Biology. 66: 83-91. PMID 15302218 DOI: 10.1016/J.Tpb.2004.04.005 |
0.493 |
|
| 2004 |
Achaz G, Palmer S, Kearney M, Maldarelli F, Mellors JW, Coffin JM, Wakeley J. A robust measure of HIV-1 population turnover within chronically infected individuals. Molecular Biology and Evolution. 21: 1902-12. PMID 15215321 DOI: 10.1093/Molbev/Msh196 |
0.418 |
|
| 2004 |
Wakeley J. Metapopulation models for historical inference. Molecular Ecology. 13: 865-875. PMID 15012761 DOI: 10.1111/J.1365-294X.2004.02086.X |
0.513 |
|
| 2004 |
Lessard S, Wakeley J. The two-locus ancestral graph in a subdivided population: convergence as the number of demes grows in the island model. Journal of Mathematical Biology. 48: 275-92. PMID 14991233 DOI: 10.1007/S00285-003-0230-X |
0.442 |
|
| 2003 |
Wakeley J, Lessard S. Theory of the effects of population structure and sampling on patterns of linkage disequilibrium applied to genomic data from humans. Genetics. 164: 1043-53. PMID 12871914 |
0.365 |
|
| 2003 |
Wakeley J, Takahashi T. Gene genealogies when the sample size exceeds the effective size of the population. Molecular Biology and Evolution. 20: 208-213. PMID 12598687 DOI: 10.1093/Molbev/Msg024 |
0.477 |
|
| 2003 |
Cherry JL, Wakeley J. A diffusion approximation for selection and drift in a subdivided population. Genetics. 163: 421-8. PMID 12586727 DOI: 10.1093/genetics/163.1.421 |
0.381 |
|
| 2003 |
Wakeley J. Polymorphism and divergence for island-model species. Genetics. 163: 411-20. PMID 12586726 DOI: 10.1093/genetics/163.1.411 |
0.388 |
|
| 2003 |
Rouzine IM, Wakeley J, Coffin JM. The solitary wave of asexual evolution. Proceedings of the National Academy of Sciences of the United States of America. 100: 587-92. PMID 12525686 DOI: 10.1073/Pnas.242719299 |
0.479 |
|
| 2002 |
Wilkins JF, Wakeley J. The coalescent in a continuous, finite, linear population. Genetics. 161: 873-88. PMID 12072481 |
0.686 |
|
| 2001 |
Wakeley J, Nielsen R, Liu-Cordero SN, Ardlie K. The Discovery of Single-Nucleotide Polymorphisms—and Inferences about Human Demographic History American Journal of Human Genetics. 69: 1332-1347. PMID 11704929 DOI: 10.1086/324521 |
0.652 |
|
| 2001 |
Wakeley J. The coalescent in an island model of population subdivision with variation among demes. Theoretical Population Biology. 59: 133-144. PMID 11302758 DOI: 10.1006/Tpbi.2000.1495 |
0.533 |
|
| 2000 |
Wakeley J. The effects of subdivision on the genetic divergence of populations and species. Evolution. 54: 1092-1101. PMID 11005279 DOI: 10.1111/J.0014-3820.2000.Tb00545.X |
0.501 |
|
| 1998 |
Wakeley J. Segregating Sites in Wright's Island Model☆ Theoretical Population Biology. 53: 166-174. PMID 9615475 DOI: 10.1006/Tpbi.1997.1355 |
0.466 |
|
| 1997 |
Wakeley J. Using the variance of pairwise differences to estimate the recombination rate. Genetics Research. 69: 45-48. PMID 9164174 DOI: 10.1017/S0016672396002571 |
0.371 |
|
| 1996 |
Wakeley J. The excess of transitions among nucleotide substitutions: new methods of estimating transition bias underscore its significance Trends in Ecology and Evolution. 11: 158-162. PMID 21237791 DOI: 10.1016/0169-5347(96)10009-4 |
0.305 |
|
| 1996 |
Wakeley J. Pairwise differences under a general model of population subdivision Journal of Genetics. 75: 81-89. DOI: 10.1007/Bf02931753 |
0.493 |
|
| 1995 |
Cummings MP, Otto SP, Wakeley J. Sampling properties of DNA sequence data in phylogenetic analysis. Molecular Biology and Evolution. 12: 814-22. PMID 7476127 DOI: 10.1093/Oxfordjournals.Molbev.A040258 |
0.308 |
|
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