| Year |
Citation |
Score |
| 2023 |
Wolff BJ, Waller JL, Benitez AJ, Gaines A, Conley AB, Rishishwar L, Chande AT, Morrison SS, Jordan IK, Diaz MH, Winchell JM. Genomic analysis of from a multistate zoonotic outbreak in two chicken processing plants. Journal of Genomics. 11: 40-44. PMID 37670735 DOI: 10.7150/jgen.86558 |
0.309 |
|
| 2023 |
Lee KK, Norris ET, Rishishwar L, Conley AB, Mariño-Ramírez L, McDonald JF, Jordan IK. Ethnic disparities in mortality and group-specific risk factors in the UK Biobank. Plos Global Public Health. 3: e0001560. PMID 36963080 DOI: 10.1371/journal.pgph.0001560 |
0.362 |
|
| 2022 |
Jordan IK, Lee KK, McDonald JF, Mariño-Ramírez L. Epigenetics and cancer disparities: when nature might be nurture. Oncoscience. 9: 23-24. PMID 35479648 DOI: 10.18632/oncoscience.555 |
0.354 |
|
| 2022 |
Lee KK, Rishishwar L, Ban D, Nagar SD, Mariño-Ramírez L, McDonald JF, Jordan IK. Association of genetic ancestry and molecular signatures with cancer survival disparities: a pan-cancer analysis. Cancer Research. PMID 35064017 DOI: 10.1158/0008-5472.CAN-21-2105 |
0.401 |
|
| 2021 |
Medina-Cordoba LK, Chande AT, Rishishwar L, Mayer LW, Valderrama-Aguirre LC, Valderrama-Aguirre A, Gaby JC, Kostka JE, Jordan IK. Genomic characterization and computational phenotyping of nitrogen-fixing bacteria isolated from Colombian sugarcane fields. Scientific Reports. 11: 9187. PMID 33911103 DOI: 10.1038/s41598-021-88380-8 |
0.597 |
|
| 2020 |
Chande AT, Rishishwar L, Ban D, Nagar SD, Conley AB, Rowell J, Valderrama-Aguirre AE, Medina-Rivas MA, Jordan IK. The phenotypic consequences of genetic divergence between admixed Latin American populations: Antioquia and Chocó, Colombia. Genome Biology and Evolution. PMID 32681795 DOI: 10.1093/Gbe/Evaa154 |
0.306 |
|
| 2020 |
Espitia-Navarro HF, Chande AT, Nagar SD, Smith H, Jordan IK, Rishishwar L. STing: accurate and ultrafast genomic profiling with exact sequence matches. Nucleic Acids Research. PMID 32619234 DOI: 10.1093/Nar/Gkaa566 |
0.497 |
|
| 2020 |
Clayton EA, Rishishwar L, Huang TC, Gulati S, Ban D, McDonald JF, Jordan IK. An atlas of transposable element-derived alternative splicing in cancer. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 375: 20190342. PMID 32075558 DOI: 10.1098/Rstb.2019.0342 |
0.555 |
|
| 2020 |
Clayton EA, Khalid S, Ban D, Wang L, Jordan IK, McDonald JF. Tumor suppressor genes and allele-specific expression: mechanisms and significance. Oncotarget. 11: 462-479. PMID 32064050 DOI: 10.18632/Oncotarget.27468 |
0.48 |
|
| 2020 |
Norris ET, Rishishwar L, Chande AT, Conley AB, Ye K, Valderrama-Aguirre A, Jordan IK. Admixture-enabled selection for rapid adaptive evolution in the Americas. Genome Biology. 21: 29. PMID 32028992 DOI: 10.1186/S13059-020-1946-2 |
0.389 |
|
| 2019 |
Crisan CV, Chande AT, Williams K, Raghuram V, Rishishwar L, Steinbach G, Watve SS, Yunker P, Jordan IK, Hammer BK. Analysis of Vibrio cholerae genomes identifies new type VI secretion system gene clusters. Genome Biology. 20: 163. PMID 31405375 DOI: 10.1186/S13059-019-1765-5 |
0.351 |
|
| 2019 |
Norris ET, Rishishwar L, Wang L, Conley AB, Chande AT, Dabrowski AM, Valderrama-Aguirre A, Jordan IK. Assortative Mating on Ancestry-Variant Traits in Admixed Latin American Populations. Frontiers in Genetics. 10: 359. PMID 31105740 DOI: 10.3389/Fgene.2019.00359 |
0.371 |
|
| 2019 |
Nagar SD, Moreno AM, Norris ET, Rishishwar L, Conley AB, O'Neal KL, Vélez-Gómez S, Montes-Rodríguez C, Jaraba-Álvarez WV, Torres I, Medina-Rivas MA, Valderrama-Aguirre A, Jordan IK, Gallo JE. Population Pharmacogenomics for Precision Public Health in Colombia. Frontiers in Genetics. 10: 241. PMID 30967898 DOI: 10.3389/Fgene.2019.00241 |
0.35 |
|
| 2018 |
Norris ET, Wang L, Conley AB, Rishishwar L, Mariño-Ramírez L, Valderrama-Aguirre A, Jordan IK. Genetic ancestry, admixture and health determinants in Latin America. Bmc Genomics. 19: 861. PMID 30537949 DOI: 10.1186/S12864-018-5195-7 |
0.321 |
|
| 2018 |
Chande AT, Wang L, Rishishwar L, Conley AB, Norris ET, Valderrama-Aguirre A, Jordan IK. GlobAl Distribution of GEnetic Traits (GADGET) web server: polygenic trait scores worldwide. Nucleic Acids Research. PMID 29788182 DOI: 10.1093/Nar/Gky415 |
0.349 |
|
| 2018 |
Medina-Cordoba LK, Chande AT, Rishishwar L, Mayer LW, Mariño-Ramírez L, Valderrama-Aguirre LC, Valderrama-Aguirre A, Kostka JE, Jordan IK. Genome Sequences of 15 Klebsiella sp. Isolates from Sugarcane Fields in Colombia's Cauca Valley. Genome Announcements. 6. PMID 29567732 DOI: 10.1128/Genomea.00104-18 |
0.665 |
|
| 2018 |
Wang L, Jordan IK. Transposable element activity, genome regulation and human health. Current Opinion in Genetics & Development. 49: 25-33. PMID 29505964 DOI: 10.1016/J.Gde.2018.02.006 |
0.503 |
|
| 2017 |
Gaby JC, Rishishwar L, Valderrama-Aguirre LC, Green SJ, Valderrama-Aguirre A, Jordan IK, Kostka JE. Diazotroph community characterization via a high-throughput nifH amplicon sequencing and analysis pipeline. Applied and Environmental Microbiology. PMID 29180374 DOI: 10.1128/Aem.01512-17 |
0.443 |
|
| 2017 |
Conley AB, Rishishwar L, Norris ET, Valderrama-Aguirre A, Mariño-Ramírez L, Medina-Rivas MA, Jordan IK. A Comparative Analysis of Genetic Ancestry and Admixture in the Colombian Populations of Chocó and Medellín. G3 (Bethesda, Md.). PMID 28855283 DOI: 10.1534/G3.117.1118 |
0.321 |
|
| 2017 |
Wang L, Norris ET, Jordan IK. Human Retrotransposon Insertion Polymorphisms Are Associated with Health and Disease via Gene Regulatory Phenotypes. Frontiers in Microbiology. 8: 1418. PMID 28824558 DOI: 10.3389/fmicb.2017.01418 |
0.304 |
|
| 2017 |
Rishishwar L, Wang L, Clayton EA, Mariño-Ramírez L, McDonald JF, Jordan IK. Population and clinical genetics of human transposable elements in the (post) genomic era. Mobile Genetic Elements. 7: 1-20. PMID 28228978 DOI: 10.1080/2159256X.2017.1280116 |
0.579 |
|
| 2017 |
Rishishwar L, Mariño-Ramírez L, Jordan IK. Benchmarking computational tools for polymorphic transposable element detection. Briefings in Bioinformatics. 18: 908-918. PMID 27524380 DOI: 10.1093/Bib/Bbw072 |
0.4 |
|
| 2016 |
Watve SS, Chande AT, Rishishwar L, Mariño-Ramírez L, Jordan IK, Hammer BK. Whole-Genome Sequences of 26 Vibrio cholerae Isolates. Genome Announcements. 4. PMID 28007852 DOI: 10.1128/Genomea.01396-16 |
0.525 |
|
| 2016 |
Wang L, Rishishwar L, Mariño-Ramírez L, Jordan IK. Human population-specific gene expression and transcriptional network modification with polymorphic transposable elements. Nucleic Acids Research. PMID 27998931 DOI: 10.1093/Nar/Gkw1286 |
0.415 |
|
| 2016 |
Clayton EA, Wang L, Rishishwar L, Wang J, McDonald JF, Jordan IK. Patterns of Transposable Element Expression and Insertion in Cancer. Frontiers in Molecular Biosciences. 3: 76. PMID 27900322 DOI: 10.3389/Fmolb.2016.00076 |
0.552 |
|
| 2016 |
Hu F, Rishishwar L, Sivadas A, Mitchell GJ, Jordan IK, Murphy TF, Gilsdorf JR, Mayer LW, Wang X. Comparative genomic analysis of Haemophilus haemolyticus and non-typeable Haemophilus influenzae and a new testing scheme for their discrimination. Journal of Clinical Microbiology. PMID 27707939 DOI: 10.1128/Jcm.01511-16 |
0.554 |
|
| 2016 |
Gupta A, Jordan IK, Rishishwar L. stringMLST: a fast k-mer based tool for multi locus sequence typing. Bioinformatics (Oxford, England). PMID 27605103 DOI: 10.1093/Bioinformatics/Btw586 |
0.473 |
|
| 2016 |
Orata FD, Xu Y, Gladney LM, Rishishwar L, Case RJ, Boucher Y, Jordan IK, Tarr CL. Characterization of clinical and environmental isolates of Vibrio cidicii sp. nov., a close relative of Vibrio navarrensis. International Journal of Systematic and Evolutionary Microbiology. PMID 27468862 DOI: 10.1099/Ijsem.0.001327 |
0.36 |
|
| 2016 |
Rishishwar L, Kraft CS, Jordan IK. Population Genomics of Reduced Vancomycin Susceptibility in Staphylococcus aureus. Msphere. 1. PMID 27446992 DOI: 10.1128/mSphere.00094-16 |
0.302 |
|
| 2016 |
Hemme CL, Green SJ, Rishishwar L, Prakash O, Pettenato A, Chakraborty R, Deutschbauer AM, Van Nostrand JD, Wu L, He Z, Jordan IK, Hazen TC, Arkin AP, Kostka JE, Zhou J. Lateral Gene Transfer in a Heavy Metal-Contaminated-Groundwater Microbial Community. Mbio. 7. PMID 27048805 DOI: 10.1128/Mbio.02234-15 |
0.412 |
|
| 2016 |
Jordan IK. The Columbian Exchange as a source of adaptive introgression in human populations. Biology Direct. 11: 17. PMID 27038633 DOI: 10.1186/S13062-016-0121-X |
0.449 |
|
| 2015 |
Rishishwar L, Tellez Villa CE, Jordan IK. Transposable element polymorphisms recapitulate human evolution. Mobile Dna. 6: 21. PMID 26579215 DOI: 10.1186/S13100-015-0052-6 |
0.439 |
|
| 2015 |
Wang J, Vicente-García C, Seruggia D, Moltó E, Fernandez-Miñán A, Neto A, Lee E, Gómez-Skarmeta JL, Montoliu L, Lunyak VV, Jordan IK. MIR retrotransposon sequences provide insulators to the human genome. Proceedings of the National Academy of Sciences of the United States of America. 112: E4428-37. PMID 26216945 DOI: 10.1073/Pnas.1507253112 |
0.371 |
|
| 2015 |
Rishishwar L, Conley AB, Wigington CH, Wang L, Valderrama-Aguirre A, Jordan IK. Ancestry, admixture and fitness in Colombian genomes. Scientific Reports. 5: 12376. PMID 26197429 DOI: 10.1038/Srep12376 |
0.432 |
|
| 2014 |
Gladney LM, Katz LS, Knipe KM, Rowe LA, Conley AB, Rishishwar L, Mariño-Ramírez L, Jordan IK, Tarr CL. Genome Sequences of Vibrio navarrensis, a Potential Human Pathogen. Genome Announcements. 2. PMID 25414502 DOI: 10.1128/Genomea.01188-14 |
0.752 |
|
| 2014 |
Jjingo D, Conley AB, Wang J, Mariño-Ramírez L, Lunyak VV, Jordan IK. Mammalian-wide interspersed repeat (MIR)-derived enhancers and the regulation of human gene expression. Mobile Dna. 5: 14. PMID 25018785 DOI: 10.1186/1759-8753-5-14 |
0.327 |
|
| 2014 |
Dunn J, Qiu H, Kim S, Jjingo D, Hoffman R, Kim CW, Jang I, Son DJ, Kim D, Pan C, Fan Y, Jordan IK, Jo H. Flow-dependent epigenetic DNA methylation regulates endothelial gene expression and atherosclerosis. The Journal of Clinical Investigation. 124: 3187-99. PMID 24865430 DOI: 10.1172/Jci74792 |
0.306 |
|
| 2014 |
Rishishwar L, Petit RA, Kraft CS, Jordan IK. Genome sequence-based discriminator for vancomycin-intermediate Staphylococcus aureus. Journal of Bacteriology. 196: 940-8. PMID 24363339 DOI: 10.1128/Jb.01410-13 |
0.465 |
|
| 2013 |
Jjingo D, Wang J, Conley AB, Lunyak VV, Jordan IK, Birol I. Compound cis-regulatory elements with both boundary and enhancer sequences in the human genome Bioinformatics. 29: 3109-3112. PMID 24085569 DOI: 10.1093/Bioinformatics/Btt542 |
0.504 |
|
| 2013 |
Sebastian A, Rishishwar L, Wang J, Bernard KF, Conley AB, McCarty NA, Jordan IK. Origin and evolution of the cystic fibrosis transmembrane regulator protein R domain. Gene. 523: 137-46. PMID 23578801 DOI: 10.1016/J.Gene.2013.02.050 |
0.328 |
|
| 2013 |
Wang J, Lunyak VV, Jordan IK. BroadPeak: a novel algorithm for identifying broad peaks in diffuse ChIP-seq datasets. Bioinformatics (Oxford, England). 29: 492-3. PMID 23300134 DOI: 10.1093/Bioinformatics/Bts722 |
0.344 |
|
| 2012 |
Conley AB, Jordan IK. Cell type-specific termination of transcription by transposable element sequences. Mobile Dna. 3: 15. PMID 23020800 DOI: 10.1186/1759-8753-3-15 |
0.497 |
|
| 2012 |
Wang J, Lunyak VV, Jordan IK. Chromatin signature discovery via histone modification profile alignments. Nucleic Acids Research. 40: 10642-56. PMID 22989711 DOI: 10.1093/Nar/Gks848 |
0.372 |
|
| 2012 |
Rishishwar L, Katz LS, Sharma NV, Rowe L, Frace M, Dolan Thomas J, Harcourt BH, Mayer LW, Jordan IK. Genomic basis of a polyagglutinating isolate of Neisseria meningitidis. Journal of Bacteriology. 194: 5649-56. PMID 22904290 DOI: 10.1128/Jb.06604-11 |
0.796 |
|
| 2012 |
Kostka JE, Green SJ, Rishishwar L, Prakash O, Katz LS, Mariño-RamÃrez L, Jordan IK, Munk C, Ivanova N, Mikhailova N, Watson DB, Brown SD, Palumbo AV, Brooks SC. Genome sequences for six Rhodanobacter strains, isolated from soils and the terrestrial subsurface, with variable denitrification capabilities. Journal of Bacteriology. 194: 4461-2. PMID 22843592 DOI: 10.1128/Jb.00871-12 |
0.705 |
|
| 2012 |
Blackwell BJ, Lopez MF, Wang J, Krastins B, Sarracino D, Tollervey JR, Dobke M, Jordan IK, Lunyak VV. Protein interactions with piALU RNA indicates putative participation of retroRNA in the cell cycle, DNA repair and chromatin assembly. Mobile Genetic Elements. 2: 26-35. PMID 22754750 DOI: 10.4161/Mge.19032 |
0.332 |
|
| 2012 |
Lee KJ, Conley AB, Lunyak VV, Jordan IK. Do human transposable element small RNAs serve primarily as genome defenders or genome regulators? Mobile Genetic Elements. 2: 19-25. PMID 22754749 DOI: 10.4161/Mge.19031 |
0.437 |
|
| 2012 |
Jjingo D, Conley AB, Yi SV, Lunyak VV, Jordan IK. On the presence and role of human gene-body DNA methylation. Oncotarget. 3: 462-74. PMID 22577155 DOI: 10.18632/Oncotarget.497 |
0.337 |
|
| 2012 |
Wang J, Lunyak VV, Jordan IK. Genome-wide prediction and analysis of human chromatin boundary elements. Nucleic Acids Research. 40: 511-29. PMID 21930510 DOI: 10.1093/Nar/Gkr750 |
0.377 |
|
| 2012 |
Conley AB, Jordan IK. Cell type-specific termination of transcription by transposable element sequences Mobile Dna. 3. DOI: 10.1186/1759-8753-3-15 |
0.411 |
|
| 2012 |
Conley AB, Jordan IK. Endogenous retroviruses and the epigenome Viruses: Essential Agents of Life. 2147483647: 309-323. DOI: 10.1007/978-94-007-4899-6_16 |
0.347 |
|
| 2011 |
Piriyapongsa J, Jordan IK, Conley AB, Ronan T, Smalheiser NR. Transcription factor binding sites are highly enriched within microRNA precursor sequences. Biology Direct. 6: 61. PMID 22136256 DOI: 10.1186/1745-6150-6-61 |
0.404 |
|
| 2011 |
Huda A, Tyagi E, Mariño-Ramírez L, Bowen NJ, Jjingo D, Jordan IK. Prediction of transposable element derived enhancers using chromatin modification profiles. Plos One. 6: e27513. PMID 22087331 DOI: 10.1371/Journal.Pone.0027513 |
0.717 |
|
| 2011 |
Jordan IK, Conley AB, Antonov IV, Arthur RA, Cook ED, Cooper GP, Jones BL, Knipe KM, Lee KJ, Liu X, Mitchell GJ, Pande PR, Petit RA, Qin S, Rajan VN, et al. Genome sequences for five strains of the emerging pathogen Haemophilus haemolyticus. Journal of Bacteriology. 193: 5879-80. PMID 21952546 DOI: 10.1128/Jb.05863-11 |
0.8 |
|
| 2011 |
González-Pérez M, Murcia MI, Landsman D, Jordan IK, Mariño-Ramírez L. Genome sequence of the Mycobacterium colombiense type strain, CECT 3035. Journal of Bacteriology. 193: 5866-7. PMID 21952541 DOI: 10.1128/Jb.05928-11 |
0.379 |
|
| 2011 |
Katz LS, Humphrey JC, Conley AB, Nelakuditi V, Kislyuk AO, Agrawal S, Jayaraman P, Harcourt BH, Olsen-Rasmussen MA, Frace M, Sharma NV, Mayer LW, Jordan IK. Neisseria Base: a comparative genomics database for Neisseria meningitidis. Database : the Journal of Biological Databases and Curation. 2011: bar035. PMID 21930505 DOI: 10.1093/Database/Bar035 |
0.801 |
|
| 2011 |
Katz LS, Sharma NV, Harcourt BH, Thomas JD, Wang X, Mayer LW, Jordan IK. Using single-nucleotide polymorphisms to discriminate disease-associated from carried genomes of Neisseria meningitidis. Journal of Bacteriology. 193: 3633-41. PMID 21622743 DOI: 10.1128/Jb.01198-10 |
0.772 |
|
| 2011 |
Jjingo D, Huda A, Gundapuneni M, Mariño-Ramírez L, Jordan IK. Effect of the transposable element environment of human genes on gene length and expression. Genome Biology and Evolution. 3: 259-71. PMID 21362639 DOI: 10.1093/Gbe/Evr015 |
0.352 |
|
| 2011 |
Huda A, Bowen NJ, Conley AB, Jordan IK. Epigenetic regulation of transposable element derived human gene promoters. Gene. 475: 39-48. PMID 21215797 DOI: 10.1016/J.Gene.2010.12.010 |
0.725 |
|
| 2010 |
Wang J, Huda A, Lunyak VV, Jordan IK. A Gibbs sampling strategy applied to the mapping of ambiguous short-sequence tags. Bioinformatics (Oxford, England). 26: 2501-8. PMID 20871106 DOI: 10.1093/Bioinformatics/Btq460 |
0.392 |
|
| 2010 |
Conley AB, Jordan IK. Identification of transcription factor binding sites derived from transposable element sequences using ChIP-seq Methods in Molecular Biology (Clifton, N.J.). 674: 225-240. PMID 20827595 DOI: 10.1007/978-1-60761-854-6_14 |
0.458 |
|
| 2010 |
Kislyuk AO, Katz LS, Agrawal S, Hagen MS, Conley AB, Jayaraman P, Nelakuditi V, Humphrey JC, Sammons SA, Govil D, Mair RD, Tatti KM, Tondella ML, Harcourt BH, Mayer LW, ... Jordan IK, et al. A computational genomics pipeline for prokaryotic sequencing projects. Bioinformatics (Oxford, England). 26: 1819-26. PMID 20519285 DOI: 10.1093/Bioinformatics/Btq284 |
0.803 |
|
| 2010 |
Huda A, Mariño-Ramírez L, Jordan IK. Epigenetic histone modifications of human transposable elements: genome defense versus exaptation. Mobile Dna. 1: 2. PMID 20226072 DOI: 10.1186/1759-8753-1-2 |
0.518 |
|
| 2009 |
Huda A, Jordan IK. Epigenetic regulation of Mammalian genomes by transposable elements. Annals of the New York Academy of Sciences. 1178: 276-84. PMID 19845643 DOI: 10.1111/J.1749-6632.2009.05007.X |
0.467 |
|
| 2009 |
Wang J, Bowen NJ, Mariño-Ramírez L, Jordan IK. A c-Myc regulatory subnetwork from human transposable element sequences Molecular Biosystems. 5: 1831-1839. PMID 19763338 DOI: 10.1039/B908494K |
0.689 |
|
| 2009 |
Katz LS, Bolen CR, Harcourt BH, Schmink S, Wang X, Kislyuk A, Taylor RT, Mayer LW, Jordan IK. Meningococcus genome informatics platform: A system for analyzing multilocus sequence typing data Nucleic Acids Research. 37. PMID 19468047 DOI: 10.1093/Nar/Gkp288 |
0.789 |
|
| 2009 |
Huda A, Mariño-Ramírez L, Landsman D, Jordan IK. Repetitive DNA elements, nucleosome binding and human gene expression. Gene. 436: 12-22. PMID 19393174 DOI: 10.1016/J.Gene.2009.01.013 |
0.39 |
|
| 2009 |
Huda A, Jordan IK. Analysis of transposable element sequences using CENSOR and RepeatMasker. Methods in Molecular Biology (Clifton, N.J.). 537: 323-36. PMID 19378152 DOI: 10.1007/978-1-59745-251-9_16 |
0.486 |
|
| 2008 |
Jordan IK, Katz LS, Denver DR, Streelman JT. Natural selection governs local, but not global, evolutionary gene coexpression networks in Caenorhabditis elegans. Bmc Systems Biology. 2: 96. PMID 19014554 DOI: 10.1186/1752-0509-2-96 |
0.648 |
|
| 2008 |
Conley AB, Piriyapongsa J, Jordan IK. Retroviral promoters in the human genome. Bioinformatics (Oxford, England). 24: 1563-7. PMID 18535086 DOI: 10.1093/Bioinformatics/Btn243 |
0.549 |
|
| 2008 |
Polavarapu N, Mariño-Ramírez L, Landsman D, McDonald JF, Jordan IK. Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA. Bmc Genomics. 9: 226. PMID 18485226 DOI: 10.1186/1471-2164-9-226 |
0.802 |
|
| 2008 |
Antezana MA, Jordan IK. Highly conserved regimes of neighbor-base-dependent mutation generated the background primary-structural heterogeneities along vertebrate chromosomes. Plos One. 3: e2145. PMID 18478116 DOI: 10.1371/Journal.Pone.0002145 |
0.339 |
|
| 2008 |
Huda A, Polavarapu N, Jordan IK, McDonald JF. Endogenous retroviruses of the chicken genome. Biology Direct. 3: 9. PMID 18361801 DOI: 10.1186/1745-6150-3-9 |
0.82 |
|
| 2008 |
Conley AB, Miller WJ, Jordan IK. Human cis natural antisense transcripts initiated by transposable elements. Trends in Genetics : Tig. 24: 53-6. PMID 18192066 DOI: 10.1016/J.Tig.2007.11.008 |
0.398 |
|
| 2007 |
Bowen N, Jordan I. Exaptation of protein coding sequences from transposable elements Genome Dynamics. 3: 147-162. PMID 18753790 DOI: 10.1159/000107609 |
0.745 |
|
| 2007 |
Piriyapongsa J, Rutledge MT, Patel S, Borodovsky M, Jordan IK. Evaluating the protein coding potential of exonized transposable element sequences. Biology Direct. 2: 31. PMID 18036258 DOI: 10.1186/1745-6150-2-31 |
0.503 |
|
| 2007 |
Piriyapongsa J, Jordan IK. A family of human microRNA genes from miniature inverted-repeat transposable elements. Plos One. 2: e203. PMID 17301878 DOI: 10.1371/Journal.Pone.0000203 |
0.401 |
|
| 2006 |
Mariño-Ramírez L, Bodenreider O, Kantz N, Jordan IK. Co-evolutionary rates of functionally related yeast genes. Evolutionary Bioinformatics Online. 2: 271-6. PMID 18345352 DOI: 10.4137/Ebo.S0 |
0.374 |
|
| 2006 |
Tsaparas P, Mariño-Ramírez L, Bodenreider O, Koonin EV, Jordan IK. Global similarity and local divergence in human and mouse gene co-expression networks. Bmc Evolutionary Biology. 6: 70. PMID 16968540 DOI: 10.1186/1471-2148-6-70 |
0.346 |
|
| 2006 |
Mariño-Ramírez L, Jordan IK. Transposable element derived DNaseI-hypersensitive sites in the human genome. Biology Direct. 1: 20. PMID 16857058 DOI: 10.1186/1745-6150-1-20 |
0.541 |
|
| 2006 |
Jordan IK. Evolutionary tinkering with transposable elements. Proceedings of the National Academy of Sciences of the United States of America. 103: 7941-2. PMID 16705033 DOI: 10.1073/Pnas.0602656103 |
0.456 |
|
| 2005 |
Mariño-Ramírez L, Lewis KC, Landsman D, Jordan IK. Transposable elements donate lineage-specific regulatory sequences to host genomes. Cytogenetic and Genome Research. 110: 333-41. PMID 16093685 DOI: 10.1159/000084965 |
0.468 |
|
| 2005 |
Jordan IK, Mariño-Ramírez L, Koonin EV. Evolutionary significance of gene expression divergence. Gene. 345: 119-126. PMID 15716085 DOI: 10.1016/J.Gene.2004.11.034 |
0.356 |
|
| 2004 |
Jordan IK, Mariño-Ramírez L, Wolf YI, Koonin EV. Conservation and Coevolution in the Scale-Free Human Gene Coexpression Network Molecular Biology and Evolution. 21: 2058-2070. PMID 15282333 DOI: 10.1093/Molbev/Msh222 |
0.386 |
|
| 2004 |
Jordan IK, Wolf YI, Koonin EV. Duplicated genes evolve slower than singletons despite the initial rate increase Bmc Evolutionary Biology. 4: 22-22. PMID 15238160 DOI: 10.1186/1471-2148-4-22 |
0.384 |
|
| 2004 |
Jordan IK, Bowen NJ. Computational analysis of transposable element sequences Methods in Molecular Biology (Clifton, N.J.). 260: 59-71. PMID 15020802 DOI: 10.1385/1-59259-755-6:059 |
0.734 |
|
| 2003 |
Bowen NJ, Jordan IK, Epstein JA, Wood V, Levin HL. Retrotransposons and their recognition of pol II promoters: A comprehensive survey of the transposable elements from the complete genome sequence of Schizosaccharomyces pombe Genome Research. 13: 1984-1997. PMID 12952871 DOI: 10.1101/Gr.1191603 |
0.763 |
|
| 2003 |
Jordan IK, Henze K, Fedorova ND, Koonin EV, Galperin MY. Phylogenomic analysis of the Giardia intestinalis transcarboxylase reveals multiple instances of domain fusion and fission in the evolution of biotin-dependent enzymes. Journal of Molecular Microbiology and Biotechnology. 5: 172-89. PMID 12766347 DOI: 10.1159/000070268 |
0.362 |
|
| 2003 |
Jordan IK, Rogozin IB, Glazko GV, Koonin EV. Origin of a substantial fraction of human regulatory sequences from transposable elements. Trends in Genetics : Tig. 19: 68-72. PMID 12547512 DOI: 10.1016/S0168-9525(02)00006-9 |
0.523 |
|
| 2002 |
Jiang N, Jordan IK, Wessler SR. Dasheng and RIRE2. A nonautonomous long terminal repeat element and its putative autonomous partner in the rice genome. Plant Physiology. 130: 1697-705. PMID 12481052 DOI: 10.1104/Pp.015412 |
0.503 |
|
| 2002 |
Jordan IK, Rogozin IB, Wolf YI, Koonin EV. Microevolutionary genomics of bacteria. Theoretical Population Biology. 61: 435-447. PMID 12167363 DOI: 10.1006/Tpbi.2002.1588 |
0.463 |
|
| 2002 |
Bowen NJ, Jordan IK. Transposable elements and the evolution of eukaryotic complexity Current Issues in Molecular Biology. 4: 65-76. PMID 12074196 |
0.714 |
|
| 2002 |
Rogozin IB, Spiridonov AN, Sorokin AV, Wolf YI, Jordan IK, Tatusov RL, Koonin EV. Purifying and directional selection in overlapping prokaryotic genes Trends in Genetics. 18: 228-232. PMID 12047938 DOI: 10.1016/S0168-9525(02)02649-5 |
0.435 |
|
| 2002 |
Jordan IK, Rogozin IB, Wolf YI, Koonin EV. Essential Genes Are More Evolutionarily Conserved Than Are Nonessential Genes in Bacteria Genome Research. 12: 962-968. PMID 12045149 DOI: 10.1101/Gr.87702 |
0.365 |
|
| 2002 |
Jordan IK, McDonald JF. A Biologically Active Family of Human Endogenous Retroviruses Evolved from an Ancient Inactive Lineage Genome Letters. 1: 105-109. DOI: 10.1166/GL.2002.011 |
0.404 |
|
| 2001 |
Jordan IK, Kondrashov FA, Rogozin IB, Tatusov RL, Wolf YI, Koonin EV. Constant relative rate of protein evolution and detection of functional diversification among bacterial, archaeal and eukaryotic proteins. Genome Biology. 2: 1-9. PMID 11790256 DOI: 10.1186/Gb-2001-2-12-Research0053 |
0.399 |
|
| 2001 |
Jordan IK, Bishop GR, Gonzalez DS. Sequence and structural aspects of functional diversification in class I α-mannosidase evolution Bioinformatics. 17: 965-976. PMID 11673242 DOI: 10.1093/Bioinformatics/17.10.965 |
0.348 |
|
| 2001 |
Jordan IK, Makarova KS, Spouge JL, Wolf YI, Koonin EV. Lineage-specific gene expansions in bacterial and archaeal genomes. Genome Research. 11: 555-65. PMID 11282971 DOI: 10.1101/gr.gr-1660r |
0.3 |
|
| 2001 |
Jordan IK, Makarova KS, Wolf YI, Koonin EV. Gene conversions in genes encoding outer-membrane proteins in H. pylori and C. pneumoniae Trends in Genetics. 17: 7-10. PMID 11163905 DOI: 10.1016/S0168-9525(00)02151-X |
0.405 |
|
| 2001 |
Jordan IK. Statistical resources on the web Genome Biology. 2: 1-3. DOI: 10.1186/Gb-2001-2-2-Reports2002 |
0.38 |
|
| 2001 |
Jordan IK, Makarova KS, Spouge JL, Wolf YI, Koonin EV. Lineage-Specific Gene Expansions in Bacterial and Archaeal Genomes Genome Research. 11: 555-565. DOI: 10.1101/Gr.166001 |
0.414 |
|
| 2001 |
Jordan IK. A primer on genomology Trends in Genetics. 17: 673. DOI: 10.1016/S0168-9525(01)02455-6 |
0.508 |
|
| 2000 |
Gonzalez DS, Jordan IK. The α-Mannosidases: Phylogeny and Adaptive Diversification Molecular Biology and Evolution. 17: 292-300. PMID 10677852 DOI: 10.1093/Oxfordjournals.Molbev.A026309 |
0.325 |
|
| 2000 |
Jordan IK, Sutter BA, McClure MA. Molecular evolution of the Paramyxoviridae and Rhabdoviridae multiple- protein-encoding P gene Molecular Biology and Evolution. 17: 75-86. PMID 10666708 DOI: 10.1093/Oxfordjournals.Molbev.A026240 |
0.447 |
|
| 1999 |
Jordan IK, McDonald JF. Comparative genomics and evolutionary dynamics of Saccharomyces cerevisiae Ty elements. Genetica. 107: 3-13. PMID 10952193 DOI: 10.1007/978-94-011-4156-7_2 |
0.653 |
|
| 1999 |
Jordan IK, Matyunina LV, McDonald JF. Evidence for the recent horizontal transfer of long terminal repeat retrotransposon. Proceedings of the National Academy of Sciences of the United States of America. 96: 12621-5. PMID 10535972 DOI: 10.1073/Pnas.96.22.12621 |
0.534 |
|
| 1999 |
Jordan IK, McDonald JF. The role of interelement selection in Saccharomyces cerevisiae Ty element evolution. Journal of Molecular Evolution. 49: 352-7. PMID 10473776 DOI: 10.1007/Pl00006558 |
0.639 |
|
| 1999 |
Promislow DE, Jordan IK, McDonald JF. Genomic demography: a life-history analysis of transposable element evolution. Proceedings. Biological Sciences / the Royal Society. 266: 1555-60. PMID 10467744 DOI: 10.1098/rspb.1999.0815 |
0.615 |
|
| 1999 |
Jordan IK, McDonald JF. Phylogenetic perspective reveals abundant Ty1/Ty2 hybrid elements in the Saccharomyces cerevisiae genome. Molecular Biology and Evolution. 16: 419-22. PMID 10331268 DOI: 10.1093/Oxfordjournals.Molbev.A026123 |
0.58 |
|
| 1999 |
Jordan IK, McDonald JF. Tempo and mode of Ty element evolution in Saccharomyces cerevisiae. Genetics. 151: 1341-51. PMID 10101161 |
0.616 |
|
| 1998 |
Jordan IK, McDonald JF. Interelement selection in the regulatory region of the copia retrotransposon. Journal of Molecular Evolution. 47: 670-6. PMID 9847408 DOI: 10.1007/Pl00006425 |
0.563 |
|
| 1998 |
Jordan IK, McDonald JF. Evolution of the copia retrotransposon in the Drosophila melanogaster species subgroup. Molecular Biology and Evolution. 15: 1160-71. PMID 9729880 DOI: 10.1093/Oxfordjournals.Molbev.A026023 |
0.514 |
|
| 1998 |
Jordan IK, McDonald JF. Evidence for the role of recombination in the regulatory evolution of Saccharomyces cerevisiae Ty elements. Journal of Molecular Evolution. 47: 14-20. PMID 9664692 DOI: 10.1007/Pl00006358 |
0.649 |
|
| 1997 |
McDonald JF, Matyunina LV, Wilson S, Jordan IK, Bowen NJ, Miller WJ. LTR retrotransposons and the evolution of eukaryotic enhancers. Genetica. 100: 3-13. PMID 9440254 |
0.555 |
|
| 1996 |
Matyunina LV, Jordan IK, McDonald JF. Naturally occurring variation in copia expression is due to both element (cis) and host (trans) regulatory variation. Proceedings of the National Academy of Sciences of the United States of America. 93: 7097-102. PMID 8692951 DOI: 10.1073/Pnas.93.14.7097 |
0.549 |
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