Fabio Pardi, PhD - Publications

European Bioinformatics Institute, Hinxton, England, United Kingdom 

21 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Truszkowski J, Scornavacca C, Pardi F. Computing the probability of gene trees concordant with the species tree in the multispecies coalescent. Theoretical Population Biology. PMID 33333117 DOI: 10.1016/j.tpb.2020.12.002  0.36
2018 Kelk S, Pardi F, Scornavacca C, van Iersel L. Finding a most parsimonious or likely tree in a network with respect to an alignment. Journal of Mathematical Biology. PMID 30121824 DOI: 10.1007/s00285-018-1282-2  0.36
2017 Gambette P, van Iersel L, Jones M, Lafond M, Pardi F, Scornavacca C. Rearrangement moves on rooted phylogenetic networks. Plos Computational Biology. 13: e1005611. PMID 28763439 DOI: 10.1371/journal.pcbi.1005611  0.36
2016 Gambette P, van Iersel L, Kelk S, Pardi F, Scornavacca C. Do Branch Lengths Help to Locate a Tree in a Phylogenetic Network? Bulletin of Mathematical Biology. PMID 27659024 DOI: 10.1007/s11538-016-0199-4  0.36
2016 Binet M, Gascuel O, Scornavacca C, P Douzery EJ, Pardi F. Fast and accurate branch lengths estimation for phylogenomic trees. Bmc Bioinformatics. 17: 23. PMID 26744021 DOI: 10.1186/s12859-015-0821-8  1
2015 Pardi F, Scornavacca C. Reconstructible phylogenetic networks: do not distinguish the indistinguishable. Plos Computational Biology. 11: e1004135. PMID 25849429 DOI: 10.1371/journal.pcbi.1004135  0.36
2015 Pardi F, Scornavacca C. Reconstructible Phylogenetic Networks: Do Not Distinguish the Indistinguishable Plos Computational Biology. 11. DOI: 10.1371/journal.pcbi.1004135  1
2012 Pardi F, Gascuel O. Combinatorics of distance-based tree inference Proceedings of the National Academy of Sciences of the United States of America. 109: 16443-16448. PMID 23012403 DOI: 10.1073/pnas.1118368109  1
2010 Pardi F, Guillemot S, Gascuel O. Robustness of Phylogenetic Inference Based on Minimum Evolution Bulletin of Mathematical Biology. 72: 1820-1839. PMID 20449671 DOI: 10.1007/s11538-010-9510-y  1
2010 Alon N, Chor B, Pardi F, Rapoport A. Approximate maximum parsimony and ancestral maximum likelihood Ieee/Acm Transactions On Computational Biology and Bioinformatics. 7: 183-187. PMID 20150680 DOI: 10.1109/TCBB.2008.13  1
2009 Minh BQ, Pardi F, Klaere S, Von Haeseler A. Budgeted phylogenetic diversity on circular split systems Ieee/Acm Transactions On Computational Biology and Bioinformatics. 6: 22-29. PMID 19179696 DOI: 10.1109/TCBB.2008.54  1
2008 Faller B, Pardi F, Steel M. Distribution of phylogenetic diversity under random extinction Journal of Theoretical Biology. 251: 286-296. PMID 18199459 DOI: 10.1016/j.jtbi.2007.11.034  1
2008 Tress ML, Wesselink JJ, Frankish A, López G, Goldman N, Löytynoja A, Massingham T, Pardi F, Whelan S, Harrow J, Valencia A. Determination and validation of principal gene products. Bioinformatics (Oxford, England). 24: 11-7. PMID 18006548 DOI: 10.1093/bioinformatics/btm547  1
2007 Margulies EH, Cooper GM, Asimenos G, Thomas DJ, Dewey CN, Siepel A, Birney E, Keefe D, Schwartz AS, Hou M, Taylor J, Nikolaev S, Montoya-Burgos JI, Löytynoja A, Whelan S, ... Pardi F, et al. Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome. Genome Research. 17: 760-74. PMID 17567995 DOI: 10.1101/gr.6034307  1
2007 Pardi F, Goldman N. Resource-aware taxon selection for maximizing phylogenetic diversity. Systematic Biology. 56: 431-44. PMID 17558965 DOI: 10.1080/10635150701411279  1
2005 Pardi F, Goldman N. Species choice for comparative genomics: being greedy works. Plos Genetics. 1: e71. PMID 16327885 DOI: 10.1371/journal.pgen.0010071  1
2005 Pardi F, Lewis CM, Whittaker JC. SNP selection for association studies: Maximizing power across SNP choice and study size Annals of Human Genetics. 69: 733-746. PMID 16266411 DOI: 10.1111/j.1529-8817.2005.00202.x  1
2005 Pardi F, Levinson DF, Lewis CM. GSMA: Software implementation of the genome search meta-analysis method Bioinformatics. 21: 4430-4431. PMID 16249265 DOI: 10.1093/bioinformatics/bti725  1
2005 Fisher SA, Abecasis GR, Yashar BM, Zareparsi S, Swaroop A, Iyengar SK, Klein BE, Klein R, Lee KE, Majewski J, Schultz DW, Klein ML, Seddon JM, Santangelo SL, Weeks DE, ... ... Pardi F, et al. Meta-analysis of genome scans of age-related macular degeneration. Human Molecular Genetics. 14: 2257-64. PMID 15987700 DOI: 10.1093/hmg/ddi230  1
2005 Pardi F, Sibly RM, Wilkinson MJ, Whittaker JC. On the structural differences between markers and genomic AC microsatellites Journal of Molecular Evolution. 60: 688-693. PMID 15983876 DOI: 10.1007/s00239-004-0274-6  1
2005 Pardi F, Goldman N. Species choice for comparative genomics: Being greedy works Plos Genetics. 1: 0672-0675. DOI: 10.1371 /journal.pgen.0010071  1
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