James Thomson, Jr. - Publications

Affiliations: 
1873-1889 University of Glasgow, Glasgow, Scotland, United Kingdom 
Area:
Civil Engineering
Website:
https://www.universitystory.gla.ac.uk/biography/?id=WH2192&type=P

492 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Bukhman YV, Morin PA, Meyer S, Chu LF, Jacobsen JK, Antosiewicz-Bourget J, Mamott D, Gonzales M, Argus C, Bolin J, Berres ME, Fedrigo O, Steill J, Swanson SA, Jiang P, ... ... Thomson JA, et al. A high-quality blue whale genome, segmental duplications, and historical demography. Molecular Biology and Evolution. PMID 38376487 DOI: 10.1093/molbev/msae036  0.385
2024 Bukhman YV, Meyer S, Chu LF, Abueg L, Antosiewicz-Bourget J, Balacco J, Brecht M, Dinatale E, Fedrigo O, Formenti G, Fungtammasan A, Giri SJ, Hiller M, Howe K, Kihara D, ... ... Thomson JA, et al. Chromosome level genome assembly of the Etruscan shrew Suncus etruscus. Scientific Data. 11: 176. PMID 38326333 DOI: 10.1038/s41597-024-03011-x  0.375
2023 Conrad JV, Meyer S, Ramesh PS, Neira JA, Rusteika M, Mamott D, Duffin B, Bautista M, Zhang J, Hiles E, Higgins EM, Steill J, Freeman J, Ni Z, Liu S, ... Thomson JA, et al. Efficient derivation of transgene-free porcine induced pluripotent stem cells enables in vitro modeling of species-specific developmental timing. Stem Cell Reports. PMID 37949072 DOI: 10.1016/j.stemcr.2023.10.009  0.472
2023 Millikin RJ, Raja K, Steill J, Lock C, Tu X, Ross I, Tsoi LC, Kuusisto F, Ni Z, Livny M, Bockelman B, Thomson J, Stewart R. Serial KinderMiner (SKiM) discovers and annotates biomedical knowledge using co-occurrence and transformer models. Bmc Bioinformatics. 24: 412. PMID 37915001 DOI: 10.1186/s12859-023-05539-y  0.368
2023 Anderson BJ, Curtis AM, Jen A, Thomson JA, Clegg DO, Jiang P, Coon JJ, Overmyer KA, Toh H. Plasma metabolomics supports non-fasted sampling for metabolic profiling across a spectrum of glucose tolerance in the Nile rat model for type 2 diabetes. Lab Animal. 52: 269-277. PMID 37857753 DOI: 10.1038/s41684-023-01268-0  0.346
2023 Hung KJ, Fan SL, Strang CG, Park MG, Thomson JD. Pollen carryover, pollinator movement, and spatial context impact the delivery of pollination services in apple orchards. Ecological Applications : a Publication of the Ecological Society of America. e2917. PMID 37661589 DOI: 10.1002/eap.2917  0.369
2023 Toh H, Smolentsev A, Sadjadi R, Clegg D, Yan J, Stewart R, Thomson JA, Jiang P. Transcriptomic clock predicts vascular changes of prodromal diabetic retinopathy. Scientific Reports. 13: 12968. PMID 37563287 DOI: 10.1038/s41598-023-40328-w  0.365
2023 Millikin RJ, Raja K, Steill J, Lock C, Tu X, Ross I, Tsoi LC, Kuusisto F, Ni Z, Livny M, Bockelman B, Thomson J, Stewart R. Serial KinderMiner (SKiM) Discovers and Annotates Biomedical Knowledge Using Co-Occurrence and Transformer Models. Biorxiv : the Preprint Server For Biology. PMID 37397987 DOI: 10.1101/2023.05.30.542911  0.368
2023 Alabed D, Huo N, Gu Y, Thomson JG. Complete Genome of Agrobacterium fabrum Strain 1D1416. Microbiology Resource Announcements. e0026423. PMID 37338417 DOI: 10.1128/mra.00264-23  0.348
2023 Davies SG, Fletcher AM, Linsdall SM, Roberts PM, Thomson JE. General Approach to Enantiopure 1-Aminopyrrolizidines: Application to the Asymmetric Synthesis of the Loline Alkaloids. The Journal of Organic Chemistry. PMID 37311064 DOI: 10.1021/acs.joc.3c00047  0.385
2023 Jung HS, Suknuntha K, Kim YH, Liu P, Dettle ST, Sedzro DM, Smith PR, Thomson JA, Ong IM, Slukvin II. SOX18-enforced expression diverts hemogenic endothelium-derived progenitors from T towards NK lymphoid pathways. Iscience. 26: 106621. PMID 37250328 DOI: 10.1016/j.isci.2023.106621  0.47
2023 Lou X, Tang Y, Ye L, Pretorius D, Fast VG, Kahn-Krell AM, Zhang J, Zhang J, Qiao A, Qin G, Kamp T, Thomson JA, Zhang J. Cardiac muscle patches containing four types of cardiac cells derived from human pluripotent stem cells improve recovery from cardiac injury in mice. Cardiovascular Research. PMID 36647784 DOI: 10.1093/cvr/cvad004  0.422
2022 Zhang J, Webster S, Duffin B, Bernstein MN, Steill J, Swanson S, Forsberg MH, Bolin J, Brown ME, Majumder A, Capitini CM, Stewart R, Thomson JA, Slukvin II. Generation of anti-GD2 CAR macrophages from human pluripotent stem cells for cancer immunotherapies. Stem Cell Reports. PMID 36638788 DOI: 10.1016/j.stemcr.2022.12.012  0.449
2022 Huynh J, Hotton SK, Chan R, Syed Y, Thomson J. Evaluation of novel surfactants for plant transformation. Bmc Research Notes. 15: 360. PMID 36482477 DOI: 10.1186/s13104-022-06251-5  0.357
2022 Toh H, Bagheri A, Dewey C, Stewart R, Yan L, Clegg D, Thomson JA, Jiang P. A Nile rat transcriptomic landscape across 22 organs by ultra-deep sequencing and comparative RNA-seq pipeline (CRSP). Computational Biology and Chemistry. 102: 107795. PMID 36436489 DOI: 10.1016/j.compbiolchem.2022.107795  0.387
2022 Toh H, Yang C, Formenti G, Raja K, Yan L, Tracey A, Chow W, Howe K, Bergeron LA, Zhang G, Haase B, Mountcastle J, Fedrigo O, Fogg J, Kirilenko B, ... ... Thomson JA, et al. A haplotype-resolved genome assembly of the Nile rat facilitates exploration of the genetic basis of diabetes. Bmc Biology. 20: 245. PMID 36344967 DOI: 10.1186/s12915-022-01427-8  0.362
2022 Thilmony R, Dasgupta K, Shao M, Harris D, Hartman J, Harden LA, Chan R, Thomson JG. Tissue-specific expression of in Mexican lime () confers anthocyanin accumulation in fruit. Frontiers in Plant Science. 13: 945738. PMID 36003820 DOI: 10.3389/fpls.2022.945738  0.401
2022 Loane SC, Thomson JM, Williams TL, McCallum KE. Evaluation of symmetric dimethylarginine in cats with acute kidney injury and chronic kidney disease. Journal of Veterinary Internal Medicine. PMID 35903963 DOI: 10.1111/jvim.16497  0.326
2022 Davies SG, Fletcher AM, Roberts PM, Taylor CE, Thomson JE. Microgrewiapine C: Asymmetric Synthesis, Spectroscopic Data, and Configuration Assignment. Journal of Natural Products. PMID 35771599 DOI: 10.1021/acs.jnatprod.2c00183  0.367
2022 Thomson JM, Williams TL. Retrospective analysis of association between hepatopathy and serum DGGR lipase activity in dogs: a pilot study. Journal of Veterinary Diagnostic Investigation : Official Publication of the American Association of Veterinary Laboratory Diagnosticians, Inc. 10406387221106401. PMID 35762109 DOI: 10.1177/10406387221106401  0.341
2022 Fotuhi Siahpirani A, Knaack S, Chasman D, Seirup M, Sridharan R, Stewart R, Thomson J, Roy S. Dynamic regulatory module networks for inference of cell type-specific transcriptional networks. Genome Research. PMID 35705328 DOI: 10.1101/gr.276542.121  0.404
2022 Barton B, Thomson J, Lozano Diz E, Portela R. Chemometrics for Raman Spectroscopy Harmonization. Applied Spectroscopy. 37028221094070. PMID 35622984 DOI: 10.1177/00037028221094070  0.377
2022 D'Souza SS, Kumar A, Maufort J, Weinfurter JT, Raymond M, Strelchenko N, Perrin E, Coonen J, Mejia A, Simmons H, Torbett BE, Reynolds M, Thomson JA, Slukvin I. Assessment of Safety and Immunogenicity of MHC homozygous iPSC-derived CD34+ Hematopoietic Progenitors in a NHP Model. Blood Advances. PMID 35404997 DOI: 10.1182/bloodadvances.2022006984  0.455
2022 D'Souza SS, Kumar A, Weinfurter J, Park MA, Maufort J, Tao L, Kang H, Dettle ST, Golos T, Thomson JA, Reynolds MR, Slukvin I. Generation of SIV-resistant T cells and macrophages from nonhuman primate induced pluripotent stem cells with edited CCR5 locus. Stem Cell Reports. PMID 35364011 DOI: 10.1016/j.stemcr.2022.03.003  0.429
2022 Little CJ, Haynes WJ, Huang L, Daffada CM, Wolfe BK, Perrin E, Simpson JA, Kropp Schmidt JA, Hinkle HM, Keding LT, Behrens RT, Evans DT, Kaufman DB, Thomson JA, Golos TG, et al. Robust engraftment of fetal nonhuman primate CD34-positive cells in immune-deficient mice. Journal of Leukocyte Biology. 112: 759-769. PMID 35352381 DOI: 10.1002/JLB.5TA0921-481RR  0.424
2022 Ntziouni A, Thomson JM, Xiarchos I, Li X, Bañares MA, Charitidis C, Portela R, Lozano E. Review of Existing Standards, Guides, and Practices for Raman Spectroscopy. Applied Spectroscopy. 37028221090988. PMID 35311368 DOI: 10.1177/00037028221090988  0.359
2022 Seirup M, Sengupta S, Swanson S, McIntosh BE, Colins M, Chu LF, Cheng Z, Gorkin DU, Duffin B, Bolin JM, Argus C, Stewart R, Thomson JA. Rapid changes in chromatin structure during dedifferentiation of primary hepatocytes in vitro. Genomics. 110330. PMID 35278615 DOI: 10.1016/j.ygeno.2022.110330  0.425
2021 Davies SG, Fletcher AM, Roberts PM, Taylor CE, Thomson JE. Synthesis and Configuration of -Acetyl Microgrewiapine A: Phantomization of -Acetyl 6--Microgrewiapine A. Journal of Natural Products. PMID 34918520 DOI: 10.1021/acs.jnatprod.1c00847  0.37
2021 Huo N, Gu Y, McCue KF, Alabed D, Thomson JG. Draft Genome Sequence of Agrobacterium fabrum Strain 1D1104. Microbiology Resource Announcements. 10: e0099621. PMID 34854699 DOI: 10.1128/MRA.00996-21  0.345
2021 Bacher R, Chu LF, Argus C, Bolin JM, Knight P, Thomson JA, Stewart R, Kendziorski C. Enhancing biological signals and detection rates in single-cell RNA-seq experiments with cDNA library equalization. Nucleic Acids Research. PMID 34850101 DOI: 10.1093/nar/gkab1071  0.432
2021 Kumar A, Martin R, Chen W, Bauerschmidt A, Youngblood MW, Cunningham C, Si Y, Ezeani C, Kratochvil Z, Bronen J, Thomson J, Riordan K, Yoo JY, Shirka R, Manganas L, et al. Simulated driving in the epilepsy monitoring unit: Effects of seizure type, consciousness, and motor impairment. Epilepsia. PMID 34816425 DOI: 10.1111/epi.17136  0.325
2021 Yu C, Yang H, Wang L, Thomson JA, Turng LS, Guan G. Surface modification of polytetrafluoroethylene (PTFE) with a heparin-immobilized extracellular matrix (ECM) coating for small-diameter vascular grafts applications. Materials Science & Engineering. C, Materials For Biological Applications. 128: 112301. PMID 34474852 DOI: 10.1016/j.msec.2021.112301  0.355
2021 Thomson JR, Holden PB, Anand P, Edwards NR, Porchier CA, Harris NBW. Tectonic and climatic drivers of Asian monsoon evolution. Nature Communications. 12: 4022. PMID 34188033 DOI: 10.1038/s41467-021-24244-z  0.342
2021 Ohashi K, Jürgens A, Thomson JD. Trade-off mitigation: a conceptual framework for understanding floral adaptation in multispecies interactions. Biological Reviews of the Cambridge Philosophical Society. PMID 34096158 DOI: 10.1111/brv.12754  0.375
2021 Davies SG, Fletcher AM, Roberts PM, Thomson JE. Mutual kinetic resolution: probing enantiorecognition phenomena and screening for kinetic resolution with racemic reagents. Organic & Biomolecular Chemistry. PMID 33720232 DOI: 10.1039/d0ob02151b  0.35
2021 Brown J, Barry C, Schmitz MT, Argus C, Bolin JM, Schwartz MP, Van Aartsen A, Steill J, Swanson S, Stewart R, Thomson JA, Kendziorski C. Interspecies chimeric conditions affect the developmental rate of human pluripotent stem cells. Plos Computational Biology. 17: e1008778. PMID 33647016 DOI: 10.1371/journal.pcbi.1008778  0.504
2021 Jung HS, Uenishi G, Park MA, Liu P, Suknuntha K, Raymond M, Choi YJ, Thomson JA, Ong IM, Slukvin II. SOX17 integrates HOXA and arterial programs in hemogenic endothelium to drive definitive lympho-myeloid hematopoiesis. Cell Reports. 34: 108758. PMID 33596423 DOI: 10.1016/j.celrep.2021.108758  0.44
2021 Hathwaik LT, Horstman J, Thomson JG, Thilmony R. Efficient Gene Stacking in Rice Using the GAANTRY System. Rice (New York, N.Y.). 14: 17. PMID 33547973 DOI: 10.1186/s12284-021-00460-5  0.394
2021 Hathwaik LT, Thomson JG, Thilmony R. Gene Assembly in Agrobacterium via Nucleic Acid Transfer Using Recombinase Technology (GAANTRY). Methods in Molecular Biology (Clifton, N.J.). 2238: 3-17. PMID 33471321 DOI: 10.1007/978-1-0716-1068-8_1  0.398
2020 Kuusisto F, Ng D, Steill J, Ross I, Livny M, Thomson J, Page D, Stewart R. KinderMiner Web: a simple web tool for ranking pairwise associations in biomedical applications. F1000research. 9: 832. PMID 35083039 DOI: 10.12688/f1000research.25523.2  0.365
2020 Sengupta S, Johnson B, Seirup M, Ardalani H, Duffin B, Barrett-Wilt GA, Stewart R, Thomson JA. Co-culture with mouse embryonic fibroblasts improves maintenance of metabolic function of human small hepatocyte progenitor cells. Current Research in Toxicology. 1: 70-84. PMID 34345838 DOI: 10.1016/j.crtox.2020.08.001  0.423
2020 Toh H, Thomson JA, Jiang P. Maternal High-Fiber Diet Protects Offspring against Type 2 Diabetes. Nutrients. 13. PMID 33396680 DOI: 10.3390/nu13010094  0.333
2020 Leal CG, Lennox GD, Ferraz SFB, Ferreira J, Gardner TA, Thomson JR, Berenguer E, Lees AC, Hughes RM, Mac Nally R, Aragão LEOC, de Brito JG, Castello L, Garrett RD, Hamada N, et al. Integrated terrestrial-freshwater planning doubles conservation of tropical aquatic species. Science (New York, N.Y.). 370: 117-121. PMID 33004520 DOI: 10.1126/science.aba7580  0.359
2020 Seirup M, Chu LF, Sengupta S, Leng N, Browder H, Kapadia K, Shafer CM, Duffin B, Elwell AL, Bolin JM, Swanson S, Stewart R, Kendziorski C, Thomson JA, Bacher R. Reproducibility across single-cell RNA-seq protocols for spatial ordering analysis. Plos One. 15: e0239711. PMID 32986734 DOI: 10.1371/journal.pone.0239711  0.442
2020 Dasgupta K, Hotton S, Belknap W, Syed Y, Dardick C, Thilmony R, Thomson JG. Isolation of novel citrus and plum fruit promoters and their functional characterization for fruit biotechnology. Bmc Biotechnology. 20: 43. PMID 32819338 DOI: 10.1186/s12896-020-00635-w  0.384
2020 Wang D, Xu Y, Lin YJ, Yilmaz G, Zhang J, Schmidt G, Li Q, Thomson JA, Turng LS. Biologically Functionalized Expanded Polytetrafluoroethylene Blood Vessel Grafts. Biomacromolecules. PMID 32786520 DOI: 10.1021/Acs.Biomac.0C00897  0.37
2020 Babbs A, Berg A, Chatzopoulou M, Davies KE, Davies SG, Edwards B, Elsey DJ, Emer E, Figuccia ALA, Fletcher AM, Guiraud S, Harriman S, Moir L, Robinson N, Rowley JA, ... ... Thomson JE, et al. Synthesis of SMT022357 enantiomers and evaluation in a Duchenne muscular dystrophy mouse model. Tetrahedron. 76: 130819. PMID 32713969 DOI: 10.1016/J.Tet.2019.130819  0.369
2020 Kaushik G, Gupta K, Harms V, Torr E, Evans J, Johnson HJ, Soref C, Acevedo-Acevedo S, Antosiewicz-Bourget J, Mamott D, Uhl P, Johnson BP, Palecek SP, Beebe DJ, Thomson JA, et al. Engineered Perineural Vascular Plexus for Modeling Developmental Toxicity. Advanced Healthcare Materials. e2000825. PMID 32613760 DOI: 10.1002/Adhm.202000825  0.417
2020 Wang D, Xu YY, Wang L, Wang X, Ren C, Zhang B, Li Q, Thomson J, Turng LS. Expanded Polytetrafluoroethylene Blood Vessel Grafts with Embedded Reactive Oxygen Species (ROS) Responsive Antithrombogenic Drug for Elimination of Thrombosis. Acs Applied Materials & Interfaces. PMID 32496045 DOI: 10.1021/Acsami.0C07868  0.371
2020 Hotton SK, Kammerzell M, Chan R, Hernandez BT, Young HA, Tobias C, McKeon T, Brichta J, Thomson NJ, Thomson JG. Phenotypic Examination of (L.) Crantz Accessions from the USDA-ARS National Genetics Resource Program. Plants (Basel, Switzerland). 9. PMID 32438618 DOI: 10.3390/plants9050642  0.377
2020 Jiang P, Chamberlain CS, Vanderby R, Thomson JA, Stewart R. TimeMeter assesses temporal gene expression similarity and identifies differentially progressing genes. Nucleic Acids Research. PMID 32123905 DOI: 10.1093/Nar/Gkaa142  0.42
2020 Raja K, Natarajan J, Kuusisto F, Steill J, Ross I, Thomson J, Stewart R. Automated Extraction and Visualization of Protein-Protein Interaction Networks and Beyond: A Text-Mining Protocol. Methods in Molecular Biology (Clifton, N.J.). 2074: 13-34. PMID 31583627 DOI: 10.1007/978-1-4939-9873-9_2  0.357
2020 Thomson J. Observations and Experiments on the Nature of the Morbid Poison Called Yaws, with Coloured Engravings of the Eruption. Edinburgh Medical and Surgical Journal. 15: 321-328. PMID 30332156  0.332
2020 Thomson J. On the Substitutes That May Be Used for the Cinchona. Edinburgh Medical and Surgical Journal. 16: 27-31. PMID 30332124  0.356
2020 Thomson J. Remarks on Tropical Diseases. Edinburgh Medical and Surgical Journal. 18: 31-48. PMID 30332003  0.329
2020 Thomson J. Case of Singular Malformation of the Heart, with Remarks on Deranged Circulation. Edinburgh Medical and Surgical Journal. 12: 3-11. PMID 30331422  0.325
2020 Thomson J. Dissections in Convulsive Diseases. Edinburgh Medical and Surgical Journal. 14: 614-618. PMID 30329785  0.326
2020 Thomson J. The Castle of Indolence. The Hospital. 69: 562. PMID 29834408  0.347
2020 Kuusisto F, Ng D, Steill J, Ross I, Livny M, Thomson J, Page D, Stewart R. KinderMiner Web: a simple web tool for ranking pairwise associations in biomedical applications F1000research. 9: 832. DOI: 10.12688/F1000Research.25523.1  0.365
2020 Sengupta S, Johnson B, Seirup M, Ardalani H, Duffin B, Barrett-Wilt GA, Stewart R, Thomson JA. Co-culture with mouse embryonic fibroblasts improves maintenance of metabolic function of human small hepatocyte progenitor cells Current Research in Toxicology. 1: 70-84. DOI: 10.1016/j.crtox.2020.08.001  0.435
2019 Mina SG, Alaybeyoglu B, Murphy WL, Thomson JA, Stokes CL, Cirit M. Assessment of Drug-Induced Toxicity Biomarkers in the Brain Microphysiological System (MPS) Using Targeted and Untargeted Molecular Profiling. Frontiers in Big Data. 2: 23. PMID 33693346 DOI: 10.3389/fdata.2019.00023  0.416
2019 Kuusisto F, Costa VS, Hou Z, Thomson J, Page D, Stewart R. Machine learning to predict developmental neurotoxicity with high-throughput data from 2D bio-engineered tissues. Proceedings of the ... International Conference On Machine Learning and Applications. International Conference On Machine Learning and Applications. 2019: 293-298. PMID 32181450 DOI: 10.1109/icmla.2019.00055  0.386
2019 Barry C, Schmitz MT, Argus C, Bolin JM, Probasco MD, Leng N, Duffin BM, Steill J, Swanson S, McIntosh BE, Stewart R, Kendziorski C, Thomson JA, Bacher R. Automated minute scale RNA-seq of pluripotent stem cell differentiation reveals early divergence of human and mouse gene expression kinetics. Plos Computational Biology. 15: e1007543. PMID 31815944 DOI: 10.1371/Journal.Pcbi.1007543  0.501
2019 Huo N, Gu Y, McCue KF, Alabed D, Thomson JG. Draft Genome Sequence of Agrobacterium tumefaciens Strain 1D1526. Microbiology Resource Announcements. 8. PMID 31699763 DOI: 10.1128/MRA.01084-19  0.347
2019 Da Silva Pinto S, Davies SG, Fletcher AM, Roberts PM, Thomson JE. Synthesis of (-)-Conduramine A1, (-)-Conduramine A2 and (-)-Conduramine E2 in Six Steps from Cyclohexa-1,4-diene. Organic Letters. PMID 31518146 DOI: 10.1021/Acs.Orglett.9B02914  0.378
2019 Davies SG, Fletcher AM, Roberts PM, Thomson JE, Yeung A. -Acetylcolchinol Methyl Ether (a Natural Product); Suhailamine (a Phantom Natural Product). Journal of Natural Products. PMID 31486642 DOI: 10.1021/Acs.Jnatprod.9B00595  0.365
2019 Chu LF, Mamott D, Ni Z, Bacher R, Liu C, Swanson S, Kendziorski C, Stewart R, Thomson JA. An In Vitro Human Segmentation Clock Model Derived from Embryonic Stem Cells. Cell Reports. 28: 2247-2255.e5. PMID 31461642 DOI: 10.1016/J.Celrep.2019.07.090  0.435
2019 Ardalani H, Sengupta S, Harms V, Vickerman V, Thomson JA, Murphy WL. 3-D Culture and Endothelial Cells Improve Maturity of Human Pluripotent Stem Cell-Derived Hepatocytes. Acta Biomaterialia. PMID 31362140 DOI: 10.1016/J.Actbio.2019.07.047  0.456
2019 Thomson JD. Progressive deterioration of pollination service detected in a 17-year study vanishes in a 26-year study. The New Phytologist. PMID 31356687 DOI: 10.1111/nph.16078  0.365
2019 McCue KF, Gardner E, Chan R, Thilmony R, Thomson J. Transgene stacking in potato using the GAANTRY system. Bmc Research Notes. 12: 457. PMID 31345264 DOI: 10.1186/s13104-019-4493-8  0.373
2019 Maufort JP, Israel JS, Brown ME, Kempton SJ, Albano NJ, Zeng W, Kelnhofer LE, Reynolds MR, Perrin ES, Sanchez RJ, Sluvkin II, Thomson JA, Poore SO. Major Histocompatibility Complex-Matched Arteries Have Similar Patency to Autologous Arteries in a Mauritian Cynomolgus Macaque Major Histocompatibility Complex-Defined Transplant Model. Journal of the American Heart Association. 8: e012135. PMID 31313646 DOI: 10.1161/Jaha.119.012135  0.417
2019 Chasman D, Iyer N, Fotuhi Siahpirani A, Estevez Silva M, Lippmann E, McIntosh B, Probasco MD, Jiang P, Stewart R, Thomson JA, Ashton RS, Roy S. Inferring Regulatory Programs Governing Region Specificity of Neuroepithelial Stem Cells during Early Hindbrain and Spinal Cord Development. Cell Systems. PMID 31302154 DOI: 10.1016/J.Cels.2019.05.012  0.445
2019 Zhang J, Tao R, Campbell KF, Carvalho JL, Ruiz EC, Kim GC, Schmuck EG, Raval AN, da Rocha AM, Herron TJ, Jalife J, Thomson JA, Kamp TJ. Functional cardiac fibroblasts derived from human pluripotent stem cells via second heart field progenitors. Nature Communications. 10: 2238. PMID 31110246 DOI: 10.1038/s41467-019-09831-5  0.439
2019 Toh H, Smolentsev A, Bozadjian RV, Keeley PW, Lockwood MD, Sadjadi R, Clegg DO, Blodi BA, Coffey PJ, Reese BE, Thomson JA. Vascular changes in diabetic retinopathy-a longitudinal study in the Nile rat. Laboratory Investigation; a Journal of Technical Methods and Pathology. PMID 31101854 DOI: 10.1038/S41374-019-0264-3  0.348
2019 Zhang J, McIntosh BE, Wang B, Brown ME, Probasco MD, Webster S, Duffin B, Zhou Y, Guo LW, Burlingham WJ, Kent C, Ferris M, Thomson JA. A Human Pluripotent Stem Cell-Based Screen for Smooth Muscle Cell Differentiation and Maturation Identifies Inhibitors of Intimal Hyperplasia. Stem Cell Reports. PMID 31080110 DOI: 10.1016/J.Stemcr.2019.04.013  0.471
2019 Huo N, Gu Y, McCue KF, Alabed D, Thomson JG. Complete Genome Sequence of Strain 1D159. Microbiology Resource Announcements. 8. PMID 31072898 DOI: 10.1128/MRA.00207-19  0.347
2019 Mesquitta WT, Wandsnider M, Kang H, Thomson J, Moskvin O, Suknuntha K, Slukvin II. UM171 expands distinct types of myeloid and NK progenitors from human pluripotent stem cells. Scientific Reports. 9: 6622. PMID 31036928 DOI: 10.1038/S41598-019-43054-4  0.452
2019 Magli A, Baik J, Mills LJ, Kwak IY, Dillon BS, Mondragon Gonzalez R, Stafford DA, Swanson SA, Stewart R, Thomson JA, Garry DJ, Dynlacht BD, Perlingeiro RCR. Time-dependent Pax3-mediated chromatin remodeling and cooperation with Six4 and Tead2 specify the skeletal myogenic lineage in developing mesoderm. Plos Biology. 17: e3000153. PMID 30807574 DOI: 10.1371/Journal.Pbio.3000153  0.453
2019 Incitti T, Magli A, Darabi R, Yuan C, Lin K, Arpke RW, Azzag K, Yamamoto A, Stewart R, Thomson JA, Kyba M, Perlingeiro RCR. Pluripotent stem cell-derived myogenic progenitors remodel their molecular signature upon in vivo engraftment. Proceedings of the National Academy of Sciences of the United States of America. PMID 30760602 DOI: 10.1073/Pnas.1808303116  0.48
2019 Mi HY, Jing X, Li ZT, Lin YJ, Thomson JA, Turng LS. Fabrication and modification of wavy multicomponent vascular grafts with biomimetic mechanical properties, antithrombogenicity, and enhanced endothelial cell affinity. Journal of Biomedical Materials Research. Part B, Applied Biomaterials. PMID 30689292 DOI: 10.1002/Jbm.B.34333  0.392
2019 Alabed D, Huo N, Gu Y, McCue KF, Thomson JG. Draft Genome Sequence of sp. 1D1416. Microbiology Resource Announcements. 8. PMID 30687823 DOI: 10.1128/MRA.01354-18  0.354
2019 Joseph DB, Chandrashekar AS, Abler LL, Chu LF, Thomson JA, Vezina CM. Epithelial DNA methyltransferase-1 regulates cell survival, growth and maturation in developing prostatic buds. Developmental Biology. PMID 30659795 DOI: 10.1016/J.Ydbio.2019.01.011  0.39
2019 Davies SG, Fletcher AM, Roberts PM, Thomson JE. SuperQuat chiral auxiliaries: design, synthesis, and utility. Organic & Biomolecular Chemistry. PMID 30633283 DOI: 10.1039/C8Ob02819B  0.379
2019 Kuang Z, Bao Y, Thomson J, Caldwell M, Peissig P, Stewart R, Willett R, Page D. A Machine-Learning-Based Drug Repurposing Approach Using Baseline Regularization. Methods in Molecular Biology (Clifton, N.J.). 1903: 255-267. PMID 30547447 DOI: 10.1007/978-1-4939-8955-3_15  0.339
2019 Thomson JD. GERMINATION SCHEDULES OF POLLEN GRAINS: IMPLICATIONS FOR POLLEN SELECTION. Evolution; International Journal of Organic Evolution. 43: 220-223. PMID 28568494 DOI: 10.1111/j.1558-5646.1989.tb04219.x  0.336
2019 Stone JL, Thomson JD. THE EVOLUTION OF DISTYLY: POLLEN TRANSFER IN ARTIFICIAL FLOWERS. Evolution; International Journal of Organic Evolution. 48: 1595-1606. PMID 28568420 DOI: 10.1111/j.1558-5646.1994.tb02198.x  0.376
2019 Thomson JD, Thomson BA. DISPERSAL OF ERYTHRONIUM GRANDIFLORUM POLLEN BY BUMBLEBEES: IMPLICATIONS FOR GENE FLOW AND REPRODUCTIVE SUCCESS. Evolution; International Journal of Organic Evolution. 43: 657-661. PMID 28568396 DOI: 10.1111/j.1558-5646.1989.tb04261.x  0.356
2019 Thomson JD, Plowright RC. Pollen carryover, nectar rewards, and pollinator behavior with special reference to Diervilla lonicera. Oecologia. 46: 68-74. PMID 28310628 DOI: 10.1007/BF00346968  0.36
2019 Farrell MJ, Thomson JA. On-Line Updating of Spatial Information Druing Locomotion Without Vision. Journal of Motor Behavior. 31: 39-53. PMID 11177618 DOI: 10.1080/00222899909601890  0.353
2019 Jung HS, Uenishi GI, Park MA, Liu P, Raymond M, Thomson J, Ong I, Slukvin I. SOX17 Is Essential for Integration of Arterial and HOXA Programs in Hemogenic Endothelium Blood. 134: 2476-2476. DOI: 10.1182/Blood-2019-130789  0.446
2019 Kaushik G, Gil DA, Torr E, Berge ES, Soref C, Uhl P, Fontana G, Antosiewicz-Bourget J, Edington C, Schwartz MP, Griffith LG, Thomson JA, Skala MC, Daly WT, Murphy WL. Vascular Networks: Quantitative Label-Free Imaging of 3D Vascular Networks Self-Assembled in Synthetic Hydrogels (Adv. Healthcare Mater. 2/2019) Advanced Healthcare Materials. 8: 1970004. DOI: 10.1002/Adhm.201970004  0.336
2018 Leal CG, Barlow J, Gardner TA, Hughes RM, Leitão RP, Nally RM, Kaufmann PR, Ferraz SFB, Zuanon J, de Paula FR, Ferreira J, Thomson JR, Lennox GD, Dary EP, Röpke CP, et al. Is environmental legislation conserving tropical stream faunas? A large-scale assessment of local, riparian and catchment-scale influences on Amazonian fish. The Journal of Applied Ecology. 55: 1312-1326. PMID 32831394 DOI: 10.1111/1365-2664.13028  0.378
2018 Brin E, Wu K, Dagostino E, Meng-Chiang Kuo M, He Y, Shia WJ, Chen LC, Stempniak M, Hickey R, Almassy R, Showalter R, Thomson J. TRAIL stabilization and cancer cell sensitization to its pro-apoptotic activity achieved through genetic fusion with arginine deiminase. Oncotarget. 9: 36914-36928. PMID 30651925 DOI: 10.18632/Oncotarget.26398  0.374
2018 Foltz LP, Howden SE, Thomson JA, Clegg DO. Functional Assessment of Patient-Derived Retinal Pigment Epithelial Cells Edited by CRISPR/Cas9. International Journal of Molecular Sciences. 19. PMID 30572641 DOI: 10.3390/Ijms19124127  0.447
2018 Kaushik G, Gil DA, Torr E, Berge ES, Soref C, Uhl P, Fontana G, Antosiewicz-Bourget J, Edington C, Schwartz MP, Griffith LG, Thomson JA, Skala MC, Daly WT, Murphy WL. Quantitative Label-Free Imaging of 3D Vascular Networks Self-Assembled in Synthetic Hydrogels. Advanced Healthcare Materials. e1801186. PMID 30565891 DOI: 10.1002/Adhm.201801186  0.38
2018 Meng Y, Ren Z, Xu F, Zhou X, Song C, Wang VY, Liu W, Lu L, Thomson JA, Chen G. Nicotinamide Promotes Cell Survival and Differentiation as Kinase Inhibitor in Human Pluripotent Stem Cells. Stem Cell Reports. PMID 30503259 DOI: 10.1016/J.Stemcr.2018.10.023  0.468
2018 Davies SG, Fletcher AM, Houlsby ITT, Roberts PM, Thomson JE, Zimmer D. The Hancock Alkaloids (-)-Cuspareine, (-)-Galipinine, (-)-Galipeine, and (-)-Angustureine: Asymmetric Syntheses and Corrected H and C NMR Data. Journal of Natural Products. PMID 30457859 DOI: 10.1021/Acs.Jnatprod.8B00672  0.386
2018 Bacher R, Leng N, Chu LF, Ni Z, Thomson JA, Kendziorski C, Stewart R. Trendy: segmented regression analysis of expression dynamics in high-throughput ordered profiling experiments. Bmc Bioinformatics. 19: 380. PMID 30326833 DOI: 10.1186/S12859-018-2405-X  0.386
2018 Joseph DB, Chandrashekar AS, Chu LF, Thomson JA, Vezina CM. A folic acid-enriched diet attenuates prostate involution in response to androgen deprivation. The Prostate. PMID 30298636 DOI: 10.1002/Pros.23723  0.341
2018 Lennox GD, Gardner TA, Thomson JR, Ferreira J, Berenguer E, Lees AC, Mac Nally R, Aragão LEOC, Ferraz SFB, Louzada J, Moura NG, Oliveira VHF, Pardini R, Solar RRC, Vaz-de Mello FZ, et al. Second rate or a second chance? Assessing biomass and biodiversity recovery in regenerating Amazonian forests. Global Change Biology. PMID 30216600 DOI: 10.1111/gcb.14443  0.377
2018 Joseph DB, Chandrashekar AS, Abler LL, Chu LF, Thomson JA, Mendelsohn C, Vezina CM. In vivo replacement of damaged bladder urothelium by Wolffian duct epithelial cells. Proceedings of the National Academy of Sciences of the United States of America. PMID 30061411 DOI: 10.1073/Pnas.1802966115  0.443
2018 Da Silva Pinto S, Davies SG, Fletcher AM, Roberts PM, Thomson JE. Diastereoselective Ammonium-Directed Epoxidation in the Asymmetric Syntheses of Dihydroconduramines (+)-C-2, (-)-C-2, (+)-D-2, (+)-E-2, (+)-F-2 and (-)-F-2. The Journal of Organic Chemistry. PMID 30037221 DOI: 10.1021/Acs.Joc.8B01359  0.374
2018 Thomson JD, Fung HF, Ogilvie JE. Effects of spatial patterning of co-flowering plant species on pollination quantity and purity. Annals of Botany. PMID 29947735 DOI: 10.1093/aob/mcy120  0.363
2018 Davies SG, Fletcher AM, Linsdall SM, Roberts PM, Thomson JE. Asymmetric Syntheses of (2 R,3 S)-3-Hydroxyproline and (2 S,3 S)-3-Hydroxyproline. Organic Letters. PMID 29943568 DOI: 10.1021/Acs.Orglett.8B01736  0.365
2018 Collier R, Thomson JG, Thilmony R. A versatile and robust Agrobacterium-based gene stacking system generates high quality transgenic Arabidopsis plants. The Plant Journal : For Cell and Molecular Biology. PMID 29901840 DOI: 10.1111/Tpj.13992  0.403
2018 Kang H, Mesquitta WT, Jung HS, Moskvin OV, Thomson JA, Slukvin II. GATA2 Is Dispensable for Specification of Hemogenic Endothelium but Promotes Endothelial-to-Hematopoietic Transition. Stem Cell Reports. PMID 29861167 DOI: 10.1016/J.Stemcr.2018.05.002  0.461
2018 Park MA, Kumar A, Jung HS, Uenishi G, Moskvin OV, Thomson JA, Slukvin II. Activation of the Arterial Program Drives Development of Definitive Hemogenic Endothelium with Lymphoid Potential. Cell Reports. 23: 2467-2481. PMID 29791856 DOI: 10.1016/J.Celrep.2018.04.092  0.44
2018 Uenishi GI, Jung HS, Kumar A, Park MA, Hadland BK, McLeod E, Raymond M, Moskvin O, Zimmerman CE, Theisen DJ, Swanson S, J Tamplin O, Zon LI, Thomson JA, Bernstein ID, et al. NOTCH signaling specifies arterial-type definitive hemogenic endothelium from human pluripotent stem cells. Nature Communications. 9: 1828. PMID 29739946 DOI: 10.1038/S41467-018-04134-7  0.453
2018 Sayadi LR, Shah A, Chopan M, Thomson JG. Axillary artery pseudoaneurysm and distal ulnar embolization in collegiate pitcher: a case report and review. Case Reports in Plastic Surgery & Hand Surgery. 5: 27-30. PMID 29707610 DOI: 10.1080/23320885.2018.1458311  0.328
2018 Vermillion KL, Bacher R, Tannenbaum AP, Swanson S, Jiang P, Chu LF, Stewart R, Thomson JA, Vereide DT. Spatial patterns of gene expression are unveiled in the chick primitive streak by ordering single-cell transcriptomes. Developmental Biology. PMID 29678445 DOI: 10.1016/J.Ydbio.2018.04.007  0.45
2018 Howden SE, Thomson JA, Little MH. Simultaneous reprogramming and gene editing of human fibroblasts. Nature Protocols. 13: 875-898. PMID 29622803 DOI: 10.1038/Nprot.2018.007  0.472
2018 Brown ME, Zhou Y, McIntosh BE, Norman IG, Lou HE, Biermann M, Sullivan JA, Kamp TJ, Thomson JA, Anagnostopoulos PV, Burlingham WJ. A Humanized Mouse Model Generated Using Surplus Neonatal Tissue. Stem Cell Reports. PMID 29576539 DOI: 10.1016/J.Stemcr.2018.02.011  0.445
2018 Miller AZ, Satchie A, Tannenbaum AP, Nihal A, Thomson JA, Vereide DT. Expandable Arterial Endothelial Precursors from Human CD34+ Cells Differ in Their Proclivity to Undergo an Endothelial-to-Mesenchymal Transition. Stem Cell Reports. 10: 73-86. PMID 29320761 DOI: 10.1016/J.Stemcr.2017.12.011  0.432
2017 Phillips MJ, Jiang P, Howden S, Barney P, Min J, York NW, Chu LF, Capowski EE, Cash A, Jain S, Barlow K, Tabassum T, Stewart R, Pattnaik BR, Thomson JA, et al. A novel approach to single cell RNA-seq analysis facilitates in silico gene reporting of human pluripotent stem cell-derived retinal cell types. Stem Cells (Dayton, Ohio). PMID 29230913 DOI: 10.1002/Stem.2755  0.484
2017 Yu E, Mi HY, Zhang J, Thomson JA, Turng LS. Development of Biomimetic Thermoplastic Polyurethane/Fibroin Small-Diameter Vascular Grafts via a Novel Electrospinning Approach. Journal of Biomedical Materials Research. Part A. PMID 29143442 DOI: 10.1002/Jbm.A.36297  0.393
2017 Parker AJ, Williams NM, Thomson JD. Geographic patterns and pollination ecotypes in Claytonia virginica. Evolution; International Journal of Organic Evolution. PMID 29055134 DOI: 10.1111/evo.13381  0.359
2017 Csatayová K, Davies SG, Fletcher AM, Fowler TR, Kennedy MS, Roberts PM, Thomson JE. Asymmetric Syntheses of 3-Deoxy-3-aminosphingoid Bases: Approaches Based on Parallel Kinetic Resolution and Double Asymmetric Induction. The Journal of Organic Chemistry. PMID 29022337 DOI: 10.1021/Acs.Joc.7B02233  0.369
2017 Jiang P, Hou Z, Bolin JM, Thomson JA, Stewart R. RNA-Seq of Human Neural Progenitor Cells Exposed to Lead (Pb) Reveals Transcriptome Dynamics, Splicing Alterations and Disease Risk Associations. Toxicological Sciences : An Official Journal of the Society of Toxicology. 159: 251-265. PMID 28903495 DOI: 10.1093/Toxsci/Kfx129  0.46
2017 Brambilla M, Brennan MB, Csatayová K, Davies SG, Fletcher AM, Kennett AMR, Lee JA, Roberts PM, Russell AJ, Thomson JE. Probing Competitive and Co-operative Hydroxyl and Ammonium Hydrogen-Bonding Directed Epoxidations. The Journal of Organic Chemistry. PMID 28858526 DOI: 10.1021/Acs.Joc.7B01774  0.367
2017 Kuusisto F, Steill J, Kuang Z, Thomson J, Page D, Stewart R. A Simple Text Mining Approach for Ranking Pairwise Associations in Biomedical Applications. Amia Joint Summits On Translational Science Proceedings. Amia Joint Summits On Translational Science. 2017: 166-174. PMID 28815126  0.381
2017 Davies SG, Fletcher AM, Houlsby ITT, Roberts PM, Thomson JE. Structural Revision of the Hancock Alkaloid (-)-Galipeine. The Journal of Organic Chemistry. PMID 28809120 DOI: 10.1021/Acs.Joc.7B01720  0.375
2017 Webber MP, Thomson JWS, Buckland-Nicks J, Croll RP, Wyeth RC. GABA-, histamine-, and FMRFamide-immunoreactivity in the visual, vestibular and central nervous systems of Hermissenda crassicornis. The Journal of Comparative Neurology. PMID 28726311 DOI: 10.1002/cne.24286  0.368
2017 Zhang J, Chu LF, Hou Z, Schwartz MP, Hacker T, Vickerman V, Swanson S, Leng N, Nguyen BK, Elwell A, Bolin J, Brown ME, Stewart R, Burlingham WJ, Murphy WL, ... Thomson JA, et al. Functional characterization of human pluripotent stem cell-derived arterial endothelial cells. Proceedings of the National Academy of Sciences of the United States of America. PMID 28696312 DOI: 10.1073/Pnas.1702295114  0.476
2017 Magli A, Incitti T, Kiley J, Swanson SA, Darabi R, Rinaldi F, Selvaraj S, Yamamoto A, Tolar J, Yuan C, Stewart R, Thomson JA, Perlingeiro RCR. PAX7 Targets, CD54, Integrin α9β1, and SDC2, Allow Isolation of Human ESC/iPSC-Derived Myogenic Progenitors. Cell Reports. 19: 2867-2877. PMID 28658631 DOI: 10.1016/J.Celrep.2017.06.005  0.476
2017 Vermilyea SC, Guthrie S, Meyer M, Smuga-Otto K, Braun K, Howden S, Thomson JA, Zhang SC, Emborg M, Golos DTG. induced Pluripotent Stem Cell-Derived Dopaminergic Neurons from Adult Common Marmoset Fibroblasts. Stem Cells and Development. PMID 28635509 DOI: 10.1089/Scd.2017.0069  0.494
2017 Barry C, Schmitz MT, Propson NE, Hou Z, Zhang J, Nguyen BK, Bolin JM, Jiang P, McIntosh BE, Probasco MD, Swanson S, Stewart R, Thomson JA, Schwartz MP, Murphy WL. Uniform neural tissue models produced on synthetic hydrogels using standard culture techniques. Experimental Biology and Medicine (Maywood, N.J.). 1535370217715028. PMID 28599598 DOI: 10.1177/1535370217715028  0.458
2017 Kumar A, D'Souza SS, Moskvin OV, Toh H, Wang B, Zhang J, Swanson S, Guo LW, Thomson JA, Slukvin II. Specification and Diversification of Pericytes and Smooth Muscle Cells from Mesenchymoangioblasts. Cell Reports. 19: 1902-1916. PMID 28564607 DOI: 10.1016/J.Celrep.2017.05.019  0.474
2017 Davies SG, Fletcher AM, Houlsby ITT, Roberts PM, Thomson JE. Asymmetric Synthesis of the Tetraponerine Alkaloids. The Journal of Organic Chemistry. PMID 28537078 DOI: 10.1021/Acs.Joc.7B00837  0.376
2017 Shao M, Blechl A, Thomson JG. Small Serine Recombination Systems ParA-MRS and CinH-RS2 Perform Precise Excision of Plastid DNA. Plant Biotechnology Journal. PMID 28421718 DOI: 10.1111/pbi.12740  0.394
2017 Bacher R, Chu LF, Leng N, Gasch AP, Thomson JA, Stewart RM, Newton M, Kendziorski C. SCnorm: robust normalization of single-cell RNA-seq data. Nature Methods. PMID 28418000 DOI: 10.1038/Nmeth.4263  0.393
2017 Zhang J, Schwartz MP, Hou Z, Bai Y, Ardalani H, Swanson S, Steill J, Ruotti V, Elwell A, Nguyen BK, Bolin J, Stewart R, Thomson JA, Murphy WL. A Genome-wide Analysis of Human Pluripotent Stem Cell-Derived Endothelial Cells in 2D or 3D Culture. Stem Cell Reports. PMID 28343999 DOI: 10.1016/J.Stemcr.2017.02.014  0.463
2017 Davies SG, Fletcher AM, Roberts PM, Thomson JE, Zimmer D. (-)-Pseudodistomin E: First Asymmetric Synthesis and Absolute Configuration Assignment. Organic Letters. PMID 28306263 DOI: 10.1021/Acs.Orglett.7B00434  0.382
2017 Collier R, Dasgupta K, Xing YP, Hernandez BT, Shao M, Rohozinski D, Kovak E, Lin J, de Oliveira ML, Stover E, McCue KF, Harmon FG, Blechl A, Thomson JG, Thilmony R. Accurate measurement of transgene copy number in crop plants using droplet digital PCR. The Plant Journal : For Cell and Molecular Biology. PMID 28231382 DOI: 10.1111/Tpj.13517  0.405
2017 Barry C, Schmitz MT, Jiang P, Schwartz MP, Duffin BM, Swanson S, Bacher R, Bolin JM, Elwell AL, McIntosh BE, Stewart R, Thomson JA. Species-Specific Developmental Timing is Maintained by Pluripotent Stem Cells Ex Utero. Developmental Biology. PMID 28179190 DOI: 10.1016/J.Ydbio.2017.02.002  0.503
2017 Dasgupta K, Thilmony R, Stover E, Oliveira ML, Thomson J. Novel R2R3-MYB Transcription Factors from Prunus americana Regulate Differential Patterns of Anthocyanin Accumulation in Tobacco and Citrus. Gm Crops & Food. 0. PMID 28051907 DOI: 10.1080/21645698.2016.1267897  0.407
2016 Yu E, Zhang J, Thomson JA, Turng LS. Fabrication and Characterization of Electrospun Thermoplastic Polyurethane/Fibroin Small-Diameter Vascular Grafts for Vascular Tissue Engineering. International Polymer Processing : the Journal of the Polymer Processing Society. 31: 638-646. PMID 29033499 DOI: 10.3139/217.3247  0.386
2016 Kuang Z, Thomson J, Caldwell M, Peissig P, Stewart R, Page D. Baseline Regularization for Computational Drug Repositioning with Longitudinal Observational Data. Ijcai : Proceedings of the Conference. 2016: 2521-2528. PMID 28392671  0.354
2016 Kuang Z, Thomson J, Caldwell M, Peissig P, Stewart R, Page D. Computational Drug Repositioning Using Continuous Self-Controlled Case Series. Kdd : Proceedings. International Conference On Knowledge Discovery & Data Mining. 2016: 491-500. PMID 28316874 DOI: 10.1145/2939672.2939715  0.347
2016 Pepper DA, Lada H, Thomson JR, Bakar KS, Lake PS, Mac Nally R. A method to identify drivers of societal change likely to affect natural assets in the future, illustrated with Australia's native biodiversity. The Science of the Total Environment. PMID 27979625 DOI: 10.1016/j.scitotenv.2016.10.112  0.389
2016 Eguchi A, Wleklinski MJ, Spurgat MC, Heiderscheit EA, Kropornicka AS, Vu CK, Bhimsaria D, Swanson SA, Stewart R, Ramanathan P, Kamp TJ, Slukvin I, Thomson JA, Dutton JR, Ansari AZ. Reprogramming cell fate with a genome-scale library of artificial transcription factors. Proceedings of the National Academy of Sciences of the United States of America. PMID 27930301 DOI: 10.1073/Pnas.1611142114  0.43
2016 Lee WH, Higuchi H, Ikeda S, Macke EL, Takimoto T, Pattnaik BR, Liu C, Chu LF, Siepka SM, Krentz KJ, Rubinstein CD, Kalejta RF, Thomson JA, Mullins RF, Takahashi JS, et al. Mouse Tmem135 mutation reveals a mechanism involving mitochondrial dynamics that leads to age-dependent retinal pathologies. Elife. 5. PMID 27863209 DOI: 10.7554/Elife.19264  0.352
2016 Erwin GS, Grieshop MP, Bhimsaria D, Do TJ, Rodríguez-Martínez JA, Mehta C, Khanna K, Swanson SA, Stewart R, Thomson JA, Ramanathan P, Ansari AZ. Synthetic genome readers target clustered binding sites across diverse chromatin states. Proceedings of the National Academy of Sciences of the United States of America. PMID 27830652 DOI: 10.1073/Pnas.1604847113  0.406
2016 Pepper DA, Lada H, Thomson JR, Bakar KS, Lake PS, Mac Nally R. Potential future scenarios for Australia's native biodiversity given on-going increases in human population. The Science of the Total Environment. 576: 381-390. PMID 27792955 DOI: 10.1016/j.scitotenv.2016.10.021  0.382
2016 Korthauer KD, Chu LF, Newton MA, Li Y, Thomson J, Stewart R, Kendziorski C. A statistical approach for identifying differential distributions in single-cell RNA-seq experiments. Genome Biology. 17: 222. PMID 27782827 DOI: 10.1186/S13059-016-1077-Y  0.427
2016 Baik J, Magli A, Tahara N, Swanson SA, Koyano-Nakagawa N, Borges L, Stewart R, Garry DJ, Kawakami Y, Thomson JA, Perlingeiro RC. Endoglin integrates BMP and Wnt signalling to induce haematopoiesis through JDP2. Nature Communications. 7: 13101. PMID 27713415 DOI: 10.1038/Ncomms13101  0.39
2016 Keller B, de Vos JM, Schmidt-Lebuhn AN, Thomson JD, Conti E. Both morph- and species-dependent asymmetries affect reproductive barriers between heterostylous species. Ecology and Evolution. 6: 6223-44. PMID 27648239 DOI: 10.1002/ece3.2293  0.375
2016 Parker AJ, Williams NM, Thomson JD. Specialist pollinators deplete pollen in the spring ephemeral wildflower Claytonia virginica. Ecology and Evolution. 6: 5169-77. PMID 27551374 DOI: 10.1002/ece3.2252  0.372
2016 de Keyzer CW, Rafferty NE, Inouye DW, Thomson JD. Confounding effects of spatial variation on shifts in phenology. Global Change Biology. PMID 27550575 DOI: 10.1111/Gcb.13472  0.366
2016 Chu LF, Leng N, Zhang J, Hou Z, Mamott D, Vereide DT, Choi J, Kendziorski C, Stewart R, Thomson JA. Single-cell RNA-seq reveals novel regulators of human embryonic stem cell differentiation to definitive endoderm. Genome Biology. 17: 173. PMID 27534536 DOI: 10.1186/S13059-016-1033-X  0.486
2016 Jiang P, Nelson JD, Leng N, Collins M, Swanson S, Dewey CN, Thomson JA, Stewart R. Analysis of embryonic development in the unsequenced axolotl: Waves of transcriptomic upheaval and stability. Developmental Biology. PMID 27475628 DOI: 10.1016/J.Ydbio.2016.05.024  0.425
2016 Valdes Franco JA, Collier R, Wang Y, Huo N, Gu Y, Thilmony R, Thomson JG. Draft Genome Sequence of Agrobacterium rhizogenes Strain NCPPB2659. Genome Announcements. 4. PMID 27469966 DOI: 10.1128/Genomea.00746-16  0.362
2016 Ogilvie JE, Thomson JD. Site fidelity by bees drives pollination facilitation in sequentially blooming plant species. Ecology. 97: 1442-51. PMID 27459775 DOI: 10.1890/15-0903.1  0.371
2016 Barlow J, Lennox GD, Ferreira J, Berenguer E, Lees AC, Nally RM, Thomson JR, Ferraz SF, Louzada J, Oliveira VH, Parry L, Ribeiro de Castro Solar R, Vieira IC, Aragão LE, Begotti RA, et al. Anthropogenic disturbance in tropical forests can double biodiversity loss from deforestation. Nature. PMID 27362236 DOI: 10.1038/nature18326  0.35
2016 Davies SG, Figuccia AL, Fletcher AM, Roberts PM, Thomson JE. Asymmetric Syntheses of (-)-ADMJ and (+)-ADANJ: the 2-Deoxy-2-amino Analogues of (-)-1-Deoxymannojirimycin and (+)-1-Deoxyallonojirimycin. The Journal of Organic Chemistry. PMID 27356096 DOI: 10.1021/Acs.Joc.6B01107  0.388
2016 Capowski EE, Wright LS, Liang K, Phillips MJ, Wallace K, Petelinsek A, Hagstrom A, Pinilla I, Borys K, Lien J, Min JH, Keles S, Thomson JA, Gamm DM. Regulation of WNT Signaling by VSX2 during Optic Vesicle Patterning in Human Induced Pluripotent Stem Cells. Stem Cells (Dayton, Ohio). PMID 27301076 DOI: 10.1002/Stem.2414  0.43
2016 Jiang P, Thomson JA, Stewart R. Quality control of single-cell RNA-seq by SinQC. Bioinformatics (Oxford, England). PMID 27153613 DOI: 10.1093/Bioinformatics/Btw176  0.41
2016 Buchman M, Csatayová K, Davies SG, Fletcher AM, Houlsby IT, Roberts PM, Rowe SM, Thomson JE. Asymmetric Syntheses of (+)-Preussin B, the C(2)-Epimer of (-)-Preussin B, and 3-Deoxy-(+)-preussin B. The Journal of Organic Chemistry. PMID 27077325 DOI: 10.1021/Acs.Joc.6B00362  0.371
2016 Zanotelli MR, Ardalani H, Zhang J, Hou Z, Nguyen EH, Swanson S, Nguyen BK, Bolin J, Elwell A, Bischel LL, Xie AW, Stewart R, Beebe DJ, Thomson JA, Schwartz MP, et al. Stable engineered vascular networks from human induced pluripotent stem cell-derived endothelial cells cultured in synthetic hydrogels. Acta Biomaterialia. PMID 26945632 DOI: 10.1016/J.Actbio.2016.03.001  0.426
2016 Lalit PA, Salick MR, Nelson DO, Squirrell JM, Shafer CM, Patel NG, Saeed I, Schmuck EG, Markandeya YS, Wong R, Lea MR, Eliceiri KW, Hacker TA, Crone WC, Kyba M, ... ... Thomson JA, et al. Lineage Reprogramming of Fibroblasts into Proliferative Induced Cardiac Progenitor Cells by Defined Factors. Cell Stem Cell. PMID 26877223 DOI: 10.1016/J.Stem.2015.12.001  0.431
2016 D'Souza SS, Maufort J, Kumar A, Zhang J, Smuga-Otto K, Thomson JA, Slukvin II. GSK3β Inhibition Promotes Efficient Myeloid and Lymphoid Hematopoiesis from Non-human Primate-Induced Pluripotent Stem Cells. Stem Cell Reports. PMID 26805448 DOI: 10.1016/J.Stemcr.2015.12.010  0.467
2016 Chan SS, Hagen HR, Swanson SA, Stewart R, Boll KA, Aho J, Thomson JA, Kyba M. Development of Bipotent Cardiac/Skeletal Myogenic Progenitors from MESP1+ Mesoderm. Stem Cell Reports. 6: 26-34. PMID 26771351 DOI: 10.1016/J.Stemcr.2015.12.003  0.398
2016 Leng N, Choi J, Chu LF, Thomson JA, Kendziorski C, Stewart R. OEFinder: A user interface to identify and visualize ordering effects in single-cell RNA-seq data. Bioinformatics (Oxford, England). PMID 26743507 DOI: 10.1093/Bioinformatics/Btw004  0.41
2016 Lee W, Higuchi H, Ikeda S, Macke EL, Takimoto T, Pattnaik BR, Liu C, Chu L, Siepka SM, Krentz KJ, Rubinstein CD, Kalejta RF, Thomson JA, Mullins RF, Takahashi JS, et al. Author response: Mouse Tmem135 mutation reveals a mechanism involving mitochondrial dynamics that leads to age-dependent retinal pathologies Elife. DOI: 10.7554/Elife.19264.020  0.342
2015 Shah A, Martin G, Thomson JG. A novel use for suture button suspension: reconstruction of the dorsal ulnar ligament to treat thumb metacarpal dislocation. Case Reports in Plastic Surgery & Hand Surgery. 2: 7-11. PMID 27252958 DOI: 10.3109/23320885.2014.997823  0.33
2015 Howden SE, Maufort JP, Duffin BM, Elefanty AG, Stanley EG, Thomson JA. Simultaneous Reprogramming and Gene Correction of Patient Fibroblasts. Stem Cell Reports. PMID 26584543 DOI: 10.1016/J.Stemcr.2015.10.009  0.449
2015 Moura NG, Lees AC, Aleixo A, Barlow J, Berenguer E, Ferreira J, Mac Nally R, Thomson JR, Gardner TA. Idiosyncratic responses of Amazonian birds to primary forest disturbance. Oecologia. PMID 26566810 DOI: 10.1007/S00442-015-3495-Z  0.365
2015 Suknuntha K, Ishii Y, Tao L, Hu K, McIntosh BE, Yang D, Swanson S, Stewart R, Wang JY, Thomson J, Slukvin I. Discovery of survival factor for primitive chronic myeloid leukemia cells using induced pluripotent stem cells. Stem Cell Research. 15: 678-693. PMID 26561938 DOI: 10.1016/J.Scr.2015.10.015  0.455
2015 Yamniuk AP, Newitt JA, Doyle ML, Arisaka F, Giannetti AM, Hensley P, Myszka DG, Schwarz FP, Thomson JA, Eisenstein E. Development of a Model Protein Interaction Pair as a Benchmarking Tool for the Quantitative Analysis of 2-Site Protein-Protein Interactions. Journal of Biomolecular Techniques : Jbt. PMID 26543437 DOI: 10.7171/Jbt.15-2604-001  0.358
2015 Pellett S, Schwartz MP, Tepp WH, Josephson R, Scherf JM, Pier CL, Thomson JA, Murphy WL, Johnson EA. Human Induced Pluripotent Stem Cell Derived Neuronal Cells Cultured on Chemically-Defined Hydrogels for Sensitive In Vitro Detection of Botulinum Neurotoxin. Scientific Reports. 5: 14566. PMID 26411797 DOI: 10.1038/Srep14566  0.461
2015 Friend K, Brooks HA, Propson NE, Thomson JA, Kimble J. Embryonic Stem Cell Growth Factors Regulate eIF2α Phosphorylation. Plos One. 10: e0139076. PMID 26406898 DOI: 10.1371/Journal.Pone.0139076  0.437
2015 Schwartz MP, Hou Z, Propson NE, Zhang J, Engstrom CJ, Costa VS, Jiang P, Nguyen BK, Bolin JM, Daly W, Wang Y, Stewart R, Page CD, Murphy WL, Thomson JA. Human pluripotent stem cell-derived neural constructs for predicting neural toxicity. Proceedings of the National Academy of Sciences of the United States of America. PMID 26392547 DOI: 10.1073/Pnas.1516645112  0.47
2015 Srivastava V, Thomson J. Gene stacking by recombinases. Plant Biotechnology Journal. PMID 26332944 DOI: 10.1111/Pbi.12459  0.412
2015 Leng N, Chu LF, Barry C, Li Y, Choi J, Li X, Jiang P, Stewart RM, Thomson JA, Kendziorski C. Oscope identifies oscillatory genes in unsynchronized single-cell RNA-seq experiments. Nature Methods. 12: 947-50. PMID 26301841 DOI: 10.1038/Nmeth.3549  0.427
2015 Solar RR, Barlow J, Ferreira J, Berenguer E, Lees AC, Thomson JR, Louzada J, Maués M, Moura NG, Oliveira VH, Chaul JC, Schoereder JH, Vieira IC, Mac Nally R, Gardner TA. How pervasive is biotic homogenization in human-modified tropical forest landscapes? Ecology Letters. 18: 1108-18. PMID 26299405 DOI: 10.1111/Ele.12494  0.371
2015 de Oliveira ML, Stover E, Thomson JG. The codA gene as a negative selection marker in Citrus. Springerplus. 4: 264. PMID 26090311 DOI: 10.1186/s40064-015-1047-y  0.419
2015 Shao M, Michno JM, Hotton SK, Blechl A, Thomson J. A bacterial gene codA encoding cytosine deaminase is an effective conditional negative selectable marker in Glycine max. Plant Cell Reports. 34: 1707-16. PMID 26082433 DOI: 10.1007/S00299-015-1818-5  0.376
2015 Yen JD, Paganin DM, Thomson JR, Mac Nally R. Thermodynamics predicts density-dependent energy use in organisms and ecological communities. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 91: 042708. PMID 25974528 DOI: 10.1103/PhysRevE.91.042708  0.346
2015 Brennan MB, Csatayová K, Davies SG, Fletcher AM, Green WD, Lee JA, Roberts PM, Russell AJ, Thomson JE. Syntheses of Dihydroconduramines (±)-B-1, (±)-E-1, and (±)-F-1 via Diastereoselective Epoxidation of N-Protected 4-Aminocyclohex-2-en-1-ols. The Journal of Organic Chemistry. 80: 6609-18. PMID 25942585 DOI: 10.1021/Acs.Joc.5B00716  0.359
2015 Davies SG, Fletcher AM, Frost AB, Roberts PM, Thomson JE. Asymmetric Synthesis of Substituted anti-β-Fluorophenylalanines. Organic Letters. 17: 2254-7. PMID 25871478 DOI: 10.1021/Acs.Orglett.5B00880  0.356
2015 Leng N, Li Y, McIntosh BE, Nguyen BK, Duffin B, Tian S, Thomson JA, Dewey CN, Stewart R, Kendziorski C. EBSeq-HMM: a Bayesian approach for identifying gene-expression changes in ordered RNA-seq experiments. Bioinformatics (Oxford, England). PMID 25847007 DOI: 10.1093/Bioinformatics/Btv193  0.402
2015 Davies SG, Thomson JE. The homalium alkaloids: isolation, synthesis, and absolute configuration assignment. The Alkaloids. Chemistry and Biology. 74: 121-58. PMID 25845060 DOI: 10.1016/Bs.Alkal.2014.09.001  0.377
2015 Hou Z, Jiang P, Swanson SA, Elwell AL, Nguyen BK, Bolin JM, Stewart R, Thomson JA. A cost-effective RNA sequencing protocol for large-scale gene expression studies. Scientific Reports. 5: 9570. PMID 25831155 DOI: 10.1038/Srep09570  0.389
2015 Davies SG, Fletcher AM, Shah RS, Roberts PM, Thomson JE. Asymmetric syntheses of nakinadine D, nakinadine E, and nakinadine F: confirmation of their relative (RS,SR)-configurations and proposal of their absolute (2S,3R)-configurations. The Journal of Organic Chemistry. 80: 4017-29. PMID 25790266 DOI: 10.1021/Acs.Joc.5B00376  0.376
2015 Tomlinson BK, Thomson JA, Bomalaski JS, Diaz M, Akande T, Mahaffey N, Li T, Dutia MP, Kelly K, Gong IY, Semrad T, Gandara DR, Pan CX, Lara PN. Phase I Trial of Arginine Deprivation Therapy with ADI-PEG 20 Plus Docetaxel in Patients with Advanced Malignant Solid Tumors. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 21: 2480-6. PMID 25739672 DOI: 10.1158/1078-0432.Ccr-14-2610  0.326
2015 Capon SJ, Lynch AJ, Bond N, Chessman BC, Davis J, Davidson N, Finlayson M, Gell PA, Hohnberg D, Humphrey C, Kingsford RT, Nielsen D, Thomson JR, Ward K, Nally RM. Regime shifts, thresholds and multiple stable states in freshwater ecosystems; a critical appraisal of the evidence. The Science of the Total Environment. PMID 25712747 DOI: 10.1016/j.scitotenv.2015.02.045  0.367
2015 Dixon JR, Jung I, Selvaraj S, Shen Y, Antosiewicz-Bourget JE, Lee AY, Ye Z, Kim A, Rajagopal N, Xie W, Diao Y, Liang J, Zhao H, Lobanenkov VV, Ecker JR, ... Thomson JA, et al. Chromatin architecture reorganization during stem cell differentiation. Nature. 518: 331-6. PMID 25693564 DOI: 10.1038/Nature14222  0.456
2015 Kundaje A, Meuleman W, Ernst J, Bilenky M, Yen A, Heravi-Moussavi A, Kheradpour P, Zhang Z, Wang J, Ziller MJ, Amin V, Whitaker JW, Schultz MD, Ward LD, ... ... Thomson JA, et al. Integrative analysis of 111 reference human epigenomes. Nature. 518: 317-30. PMID 25693563 DOI: 10.1038/Nature14248  0.442
2015 Costello JF, Davies SG, Gould ET, Thomson JE. Conformational analysis of triphenylphosphine ligands in stereogenic monometallic complexes: tools for predicting the preferred configuration of the triphenylphosphine rotor. Dalton Transactions (Cambridge, England : 2003). 44: 5451-66. PMID 25692758 DOI: 10.1039/C5Dt00250H  0.335
2015 McIntosh BE, Brown ME, Duffin BM, Maufort JP, Vereide DT, Slukvin II, Thomson JA. Nonirradiated NOD,B6.SCID Il2rγ-/- Kit(W41/W41) (NBSGW) mice support multilineage engraftment of human hematopoietic cells. Stem Cell Reports. 4: 171-80. PMID 25601207 DOI: 10.1016/J.Stemcr.2014.12.005  0.429
2015 Hou Z, Meyer S, Propson NE, Nie J, Jiang P, Stewart R, Thomson JA. Characterization and target identification of a DNA aptamer that labels pluripotent stem cells. Cell Research. 25: 390-3. PMID 25591927 DOI: 10.1038/Cr.2015.7  0.434
2015 Cho M, Oh SS, Nie J, Stewart R, Radeke MJ, Eisenstein M, Coffey PJ, Thomson JA, Soh HT. Array-based discovery of aptamer pairs. Analytical Chemistry. 87: 821-8. PMID 25495696 DOI: 10.1021/Ac504076K  0.387
2015 Raval KK, Tao R, White BE, De Lange WJ, Koonce CH, Yu J, Kishnani PS, Thomson JA, Mosher DF, Ralphe JC, Kamp TJ. Pompe disease results in a Golgi-based glycosylation deficit in human induced pluripotent stem cell-derived cardiomyocytes. The Journal of Biological Chemistry. 290: 3121-36. PMID 25488666 DOI: 10.1074/Jbc.M114.628628  0.417
2015 Lee PT, Thomson JE, Karina A, Salter C, Johnston C, Davies SG, Compton RG. Selective electrochemical determination of cysteine with a cyclotricatechylene modified carbon electrode. The Analyst. 140: 236-42. PMID 25407642 DOI: 10.1039/C4An01835D  0.353
2015 Cunningham SC, Cavagnaro TR, Mac Nally R, Paul KI, Baker PJ, Beringer J, Thomson JR, Thompson RM. Reforestation with native mixed-species plantings in a temperate continental climate effectively sequesters and stabilizes carbon within decades. Global Change Biology. 21: 1552-66. PMID 25230693 DOI: 10.1111/gcb.12746  0.374
2015 Belair DG, Whisler JA, Valdez J, Velazquez J, Molenda JA, Vickerman V, Lewis R, Daigh C, Hansen TD, Mann DA, Thomson JA, Griffith LG, Kamm RD, Schwartz MP, Murphy WL. Human vascular tissue models formed from human induced pluripotent stem cell derived endothelial cells. Stem Cell Reviews. 11: 511-25. PMID 25190668 DOI: 10.1007/S12015-014-9549-5  0.442
2015 Cresswell AJ, Davies SG, Roberts PM, Thomson JE. Beyond the Balz-Schiemann reaction: the utility of tetrafluoroborates and boron trifluoride as nucleophilic fluoride sources. Chemical Reviews. 115: 566-611. PMID 25084541 DOI: 10.1021/Cr5001805  0.363
2015 Broer PN, Juran S, Walker ME, Ng R, Weichman K, Tanna N, Liu YJ, Shah A, Patel A, Persing JA, Thomson JG. Aesthetic breast shape preferences among plastic surgeons. Annals of Plastic Surgery. 74: 639-44. PMID 24691316 DOI: 10.1097/SAP.0000000000000001  0.343
2015 D'Souza S, Maufort J, Kumar A, Thomson J, Slukvin I. Efficient Induction of Myleoid and Lymphoid Hematopoiesis from Nonhuman Primate Pluripotent Stem Cells Using GSK3b Inhibitor Blood. 126: 2363-2363. DOI: 10.1182/Blood.V126.23.2363.2363  0.456
2015 Leng N, Chu LF, Barry C, Li Y, Choi J, Li X, Jiang P, Stewart RM, Thomson JA, Kendziorski C. Oscope identifies oscillatory genes in unsynchronized single-cell RNA-seq experiments Nature Methods. DOI: 10.1038/nmeth.3549  0.395
2014 Li B, Fillmore N, Bai Y, Collins M, Thomson JA, Stewart R, Dewey CN. Evaluation of de novo transcriptome assemblies from RNA-Seq data. Genome Biology. 15: 553. PMID 25608678 DOI: 10.1186/S13059-014-0553-5  0.368
2014 Vereide DT, Vickerman V, Swanson SA, Chu LF, McIntosh BE, Thomson JA. An expandable, inducible hemangioblast state regulated by fibroblast growth factor. Stem Cell Reports. 3: 1043-57. PMID 25458896 DOI: 10.1016/J.Stemcr.2014.10.003  0.464
2014 Uenishi G, Theisen D, Lee JH, Kumar A, Raymond M, Vodyanik M, Swanson S, Stewart R, Thomson J, Slukvin I. Tenascin C promotes hematoendothelial development and T lymphoid commitment from human pluripotent stem cells in chemically defined conditions. Stem Cell Reports. 3: 1073-84. PMID 25448067 DOI: 10.1016/J.Stemcr.2014.09.014  0.487
2014 Elliott MA, Brewster SE, Thomson JA, Malcolm C, Rasmussen S. Testing the bi-dimensional effects of attitudes on behavioural intentions and subsequent behaviour. British Journal of Psychology (London, England : 1953). PMID 25440892 DOI: 10.1111/bjop.12107  0.344
2014 Csatayová K, Davies SG, Fletcher AM, Ford JG, Klauber DJ, Roberts PM, Thomson JE. Asymmetric syntheses of (-)-3-epi-Fagomine, (2R,3S,4R)-dihydroxypipecolic acid, and several polyhydroxylated homopipecolic acids. The Journal of Organic Chemistry. 79: 10932-44. PMID 25337869 DOI: 10.1021/jo501952t  0.359
2014 Davies SG, Fletcher AM, Foster EM, Houlsby IT, Roberts PM, Schofield TM, Thomson JE. The asymmetric syntheses of pyrrolizidines, indolizidines and quinolizidines via two sequential tandem ring-closure/N-debenzylation processes. Organic & Biomolecular Chemistry. 12: 9223-35. PMID 25300749 DOI: 10.1039/c4ob01737d  0.388
2014 Davies SG, Foster EM, Lee JA, Roberts PM, Thomson JE. Stereospecific cyclization strategies for α,ε-dihydroxy-β-amino esters: asymmetric syntheses of imino and amino sugars. The Journal of Organic Chemistry. 79: 9686-98. PMID 25203863 DOI: 10.1021/Jo5018298  0.365
2014 McAlpine JA, Lu HT, Wu KC, Knowles SK, Thomson JA. Down-regulation of argininosuccinate synthetase is associated with cisplatin resistance in hepatocellular carcinoma cell lines: implications for PEGylated arginine deiminase combination therapy. Bmc Cancer. 14: 621. PMID 25164070 DOI: 10.1186/1471-2407-14-621  0.363
2014 Somleva MN, Xu CA, Ryan KP, Thilmony R, Peoples O, Snell KD, Thomson J. Transgene autoexcision in switchgrass pollen mediated by the Bxb1 recombinase. Bmc Biotechnology. 14: 79. PMID 25148894 DOI: 10.1186/1472-6750-14-79  0.391
2014 Thomson JD. Bringing the male side of plant sex into focus. The American Naturalist. 184: ii-iv. PMID 25058291 DOI: 10.1086/676990  0.342
2014 Elcheva I, Brok-Volchanskaya V, Kumar A, Liu P, Lee JH, Tong L, Vodyanik M, Swanson S, Stewart R, Kyba M, Yakubov E, Cooke J, Thomson JA, Slukvin I. Direct induction of haematoendothelial programs in human pluripotent stem cells by transcriptional regulators. Nature Communications. 5: 4372. PMID 25019369 DOI: 10.1038/Ncomms5372  0.471
2014 Capowski EE, Simonett JM, Clark EM, Wright LS, Howden SE, Wallace KA, Petelinsek AM, Pinilla I, Phillips MJ, Meyer JS, Schneider BL, Thomson JA, Gamm DM. Loss of MITF expression during human embryonic stem cell differentiation disrupts retinal pigment epithelium development and optic vesicle cell proliferation. Human Molecular Genetics. 23: 6332-44. PMID 25008112 DOI: 10.1093/Hmg/Ddu351  0.47
2014 Davies SG, Fletcher AM, Foster EM, Houlsby IT, Roberts PM, Schofield TM, Thomson JE. An efficient asymmetric synthesis of (-)-lupinine. Chemical Communications (Cambridge, England). 50: 8309-11. PMID 24938152 DOI: 10.1039/C4Cc02135E  0.375
2014 Jiang P, Meyer S, Hou Z, Propson NE, Soh HT, Thomson JA, Stewart R. MPBind: a Meta-motif-based statistical framework and pipeline to Predict Binding potential of SELEX-derived aptamers. Bioinformatics (Oxford, England). 30: 2665-7. PMID 24872422 DOI: 10.1093/Bioinformatics/Btu348  0.44
2014 Davies SG, Fletcher AM, Thomson JE. Hydrogen bond directed epoxidation: diastereoselective olefinic oxidation of allylic alcohols and amines. Organic & Biomolecular Chemistry. 12: 4544-9. PMID 24854106 DOI: 10.1039/C4Ob00616J  0.354
2014 Berlin NL, Tuggle CT, Thomson JG, Au A. Digit replantation in children: a nationwide analysis of outcomes and trends of 455 pediatric patients. Hand (New York, N.Y.). 9: 244-52. PMID 24839429 DOI: 10.1007/s11552-014-9628-8  0.332
2014 Bennett JM, Clarke RH, Thomson JR, Mac Nally R. Variation in abundance of nectarivorous birds: does a competitive despot interfere with flower tracking? The Journal of Animal Ecology. 83: 1531-41. PMID 24810732 DOI: 10.1111/1365-2656.12245  0.374
2014 Sengupta S, Johnson BP, Swanson SA, Stewart R, Bradfield CA, Thomson JA. Aggregate culture of human embryonic stem cell-derived hepatocytes in suspension are an improved in vitro model for drug metabolism and toxicity testing. Toxicological Sciences : An Official Journal of the Society of Toxicology. 140: 236-45. PMID 24752503 DOI: 10.1093/Toxsci/Kfu069  0.464
2014 Brumbaugh J, Russell JD, Yu P, Westphall MS, Coon JJ, Thomson JA. NANOG is multiply phosphorylated and directly modified by ERK2 and CDK1 in vitro. Stem Cell Reports. 2: 18-25. PMID 24678451 DOI: 10.1016/J.Stemcr.2013.12.005  0.384
2014 Magli A, Schnettler E, Swanson SA, Borges L, Hoffman K, Stewart R, Thomson JA, Keirstead SA, Perlingeiro RC. Pax3 and Tbx5 specify whether PDGFRα+ cells assume skeletal or cardiac muscle fate in differentiating embryonic stem cells. Stem Cells (Dayton, Ohio). 32: 2072-83. PMID 24677751 DOI: 10.1002/Stem.1713  0.462
2014 Davies SG, Fletcher AM, Lee JA, Roberts PM, Souleymanou MY, Thomson JE, Zammit CM. Diastereoselective Ireland-Claisen rearrangements of substituted allyl β-amino esters: applications in the asymmetric synthesis of C(5)-substituted transpentacins. Organic & Biomolecular Chemistry. 12: 2702-28. PMID 24647746 DOI: 10.1039/C4Ob00274A  0.373
2014 Lada H, Thomson JR, Cunningham SC, Mac Nally R. Relating demographic characteristics of a small mammal to remotely sensed forest-stand condition. Plos One. 9: e91731. PMID 24621967 DOI: 10.1371/journal.pone.0091731  0.378
2014 Davies SG, Fletcher AM, Roberts PM, Shah RS, Thompson AL, Thomson JE. (-)-(2S,3R,Z)-Nakinadine A: first asymmetric synthesis and absolute configuration assignment. Organic Letters. 16: 1354-7. PMID 24564566 DOI: 10.1021/ol500096r  0.376
2014 Howden SE, Thomson JA. Gene targeting of human pluripotent stem cells by homologous recombination. Methods in Molecular Biology (Clifton, N.J.). 1114: 37-55. PMID 24557896 DOI: 10.1007/978-1-62703-761-7_4  0.496
2014 Phillips MJ, Perez ET, Martin JM, Reshel ST, Wallace KA, Capowski EE, Singh R, Wright LS, Clark EM, Barney PM, Stewart R, Dickerson SJ, Miller MJ, Percin EF, Thomson JA, et al. Modeling human retinal development with patient-specific induced pluripotent stem cells reveals multiple roles for visual system homeobox 2. Stem Cells (Dayton, Ohio). 32: 1480-92. PMID 24532057 DOI: 10.1002/Stem.1667  0.473
2014 Cembrowski AR, Tan MG, Thomson JD, Frederickson ME. Ants and ant scent reduce bumblebee pollination of artificial flowers. The American Naturalist. 183: 133-9. PMID 24334742 DOI: 10.1086/674101  0.368
2014 Shao M, Kumar S, Thomson JG. Precise excision of plastid DNA by the large serine recombinase Bxb1. Plant Biotechnology Journal. 12: 322-9. PMID 24261912 DOI: 10.1111/pbi.12139  0.394
2014 Suknuntha K, Ishii Y, Hu K, Brayan M, Yang DT, Swanson S, Stewart R, Wang JY, Thomson J, Slukvin I. Induced Pluripotent Stem Cell Model of Chronic Myeloid Leukemia Revealed Olfactomedin 4 As a Novel Survival Factor for Primitive Leukemia Cells Blood. 124: 397-397. DOI: 10.1182/Blood.V124.21.397.397  0.453
2014 Lister R, Pelizzola M, Kida YS, Hawkins RD, Nery JR, Hon G, Antosiewicz-Bourget J, O'Malley R, Castanon R, Klugman S, Downes M, Yu R, Stewart R, Ren B, Thomson JA, et al. Corrigendum: Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells Nature. 514: 126. DOI: 10.1038/Nature13843  0.472
2014 Elcheva I, Brok-Volchanskaya V, Kumar A, Vodyanik M, Swanson S, Stewart R, Kyba M, Yakubov E, Cooke J, Thomson J, Slukvin I. Identification of two groups of transcriptional regulators directing blood formation from human pluripotent stem cells through distinct types of hemogenic endothelium Experimental Hematology. 42: S60. DOI: 10.1016/J.Exphem.2014.07.228  0.457
2013 Hou Z, Zhang J, Schwartz MP, Stewart R, Page CD, Murphy WL, Thomson JA. A human pluripotent stem cell platform for assessing developmental neural toxicity screening. Stem Cell Research & Therapy. 4: S12. PMID 24565336 DOI: 10.1186/Scrt373  0.404
2013 Csatayová K, Davies SG, Ford JG, Lee JA, Roberts PM, Thomson JE. Asymmetric syntheses of methyl N,O-diacetyl-D-3-epi-daunosaminide and methyl N,O-diacetyl-D-ristosaminide. The Journal of Organic Chemistry. 78: 12397-408. PMID 24256461 DOI: 10.1021/jo4020563  0.374
2013 Cho M, Soo Oh S, Nie J, Stewart R, Eisenstein M, Chambers J, Marth JD, Walker F, Thomson JA, Soh HT. Quantitative selection and parallel characterization of aptamers. Proceedings of the National Academy of Sciences of the United States of America. 110: 18460-5. PMID 24167271 DOI: 10.1073/Pnas.1315866110  0.386
2013 Roy S, Lagree S, Hou Z, Thomson JA, Stewart R, Gasch AP. Integrated module and gene-specific regulatory inference implicates upstream signaling networks. Plos Computational Biology. 9: e1003252. PMID 24146602 DOI: 10.1371/Journal.Pcbi.1003252  0.394
2013 Falzone N, Myhra S, Chakalova R, Hill MA, Thomson J, Vallis KA. Characterization of single α-tracks by photoresist detection and AFM analysis-focus on biomedical science and technology. Physics in Medicine and Biology. 58: 7673-82. PMID 24113400 DOI: 10.1088/0031-9155/58/21/7673  0.364
2013 Meyer S, Maufort JP, Nie J, Stewart R, McIntosh BE, Conti LR, Ahmad KM, Soh HT, Thomson JA. Development of an efficient targeted cell-SELEX procedure for DNA aptamer reagents. Plos One. 8: e71798. PMID 23967247 DOI: 10.1371/Journal.Pone.0071798  0.457
2013 Davies SG, Fletcher AM, Thomson JE. Direct asymmetric syntheses of chiral aldehydes and ketones via N-acyl chiral auxiliary derivatives including chiral Weinreb amide equivalents. Chemical Communications (Cambridge, England). 49: 8586-98. PMID 23959006 DOI: 10.1039/c3cc45463k  0.377
2013 Hou Z, Zhang Y, Propson NE, Howden SE, Chu LF, Sontheimer EJ, Thomson JA. Efficient genome engineering in human pluripotent stem cells using Cas9 from Neisseria meningitidis. Proceedings of the National Academy of Sciences of the United States of America. 110: 15644-9. PMID 23940360 DOI: 10.1073/Pnas.1313587110  0.432
2013 Davies SG, Fletcher AM, Roberts PM, Thomson JE, Zammit CM. Asymmetric syntheses of enantiopure C(5)-substituted transpentacins via diastereoselective Ireland-Claisen rearrangements. Chemical Communications (Cambridge, England). 49: 7037-9. PMID 23821041 DOI: 10.1039/c3cc43250e  0.363
2013 Xie W, Schultz MD, Lister R, Hou Z, Rajagopal N, Ray P, Whitaker JW, Tian S, Hawkins RD, Leung D, Yang H, Wang T, Lee AY, Swanson SA, Zhang J, ... ... Thomson JA, et al. Epigenomic analysis of multilineage differentiation of human embryonic stem cells. Cell. 153: 1134-48. PMID 23664764 DOI: 10.1016/J.Cell.2013.04.022  0.469
2013 Gardner TA, Ferreira J, Barlow J, Lees AC, Parry L, Vieira IC, Berenguer E, Abramovay R, Aleixo A, Andretti C, Aragão LE, Araújo I, de Ávila WS, Bardgett RD, Batistella M, ... ... Thomson JR, et al. A social and ecological assessment of tropical land uses at multiple scales: the Sustainable Amazon Network. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 368: 20120166. PMID 23610172 DOI: 10.1098/Rstb.2012.0166  0.36
2013 Davies SG, Figuccia AL, Fletcher AM, Roberts PM, Thomson JE. Asymmetric syntheses of (-)-1-deoxymannojirimycin and (+)-1-deoxyallonojirimycin via a ring-expansion approach. Organic Letters. 15: 2042-5. PMID 23570294 DOI: 10.1021/Ol400735Z  0.367
2013 Brock EA, Davies SG, Lee JA, Roberts PM, Thomson JE. Polyhydroxylated pyrrolizidine alkaloids from transannular iodoaminations: application to the asymmetric syntheses of (-)-hyacinthacine A1, (-)-7a-epi-hyacinthacine A1, (-)-hyacinthacine A2, and (-)-1-epi-alexine. Organic & Biomolecular Chemistry. 11: 3187-202. PMID 23568024 DOI: 10.1039/C3Ob40205C  0.369
2013 Davies SG, Fletcher AM, Lee JA, Lorkin TJ, Roberts PM, Thomson JE. Asymmetric synthesis of (-)-martinellic acid. Organic Letters. 15: 2050-3. PMID 23556476 DOI: 10.1021/Ol4007508  0.384
2013 Stewart R, Rascón CA, Tian S, Nie J, Barry C, Chu LF, Ardalani H, Wagner RJ, Probasco MD, Bolin JM, Leng N, Sengupta S, Volkmer M, Habermann B, Tanaka EM, ... Thomson JA, et al. Comparative RNA-seq analysis in the unsequenced axolotl: the oncogene burst highlights early gene expression in the blastema. Plos Computational Biology. 9: e1002936. PMID 23505351 DOI: 10.1371/Journal.Pcbi.1002936  0.422
2013 Leng N, Dawson JA, Thomson JA, Ruotti V, Rissman AI, Smits BM, Haag JD, Gould MN, Stewart RM, Kendziorski C. EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics (Oxford, England). 29: 1035-43. PMID 23428641 DOI: 10.1093/bioinformatics/btt087  0.407
2013 Davies SG, Fletcher AM, Foster EM, Lee JA, Roberts PM, Thomson JE. Asymmetric syntheses of APTO and AETD: the β-amino acid fragments within microsclerodermins C, D, and E. The Journal of Organic Chemistry. 78: 2500-10. PMID 23379896 DOI: 10.1021/Jo302731M  0.373
2013 Nachev V, Thomson JD, Winter Y. The psychophysics of sugar concentration discrimination and contrast evaluation in bumblebees. Animal Cognition. 16: 417-27. PMID 23179111 DOI: 10.1007/s10071-012-0582-y  0.354
2013 Capes-Davis A, Reid YA, Kline MC, Storts DR, Strauss E, Dirks WG, Drexler HG, MacLeod RA, Sykes G, Kohara A, Nakamura Y, Elmore E, Nims RW, Alston-Roberts C, Barallon R, ... ... Thomson J, et al. Match criteria for human cell line authentication: where do we draw the line? International Journal of Cancer. Journal International Du Cancer. 132: 2510-9. PMID 23136038 DOI: 10.1002/Ijc.27931  0.423
2013 Yen JD, Thomson JR, Mac Nally R. Is there an ecological basis for species abundance distributions? Oecologia. 171: 517-25. PMID 23001621 DOI: 10.1007/s00442-012-2438-1  0.361
2013 Kinnear N, Kelly SW, Stradling S, Thomson J. Understanding how drivers learn to anticipate risk on the road: A laboratory experiment of affective anticipation of road hazards. Accident; Analysis and Prevention. 50: 1025-33. PMID 22963999 DOI: 10.1016/j.aap.2012.08.008  0.324
2013 Elliott MA, Thomson JA, Robertson K, Stephenson C, Wicks J. Evidence that changes in social cognitions predict changes in self-reported driver behavior: Causal analyses of two-wave panel data. Accident; Analysis and Prevention. 50: 905-16. PMID 22878143 DOI: 10.1016/j.aap.2012.07.017  0.347
2013 Cho M, Oh SS, Nie J, Stewart R, Eisenstein M, Chambers J, Marth JD, Thomson JA, Soh TH. Abstract 2227: Aptamer selection for cancer markers: High-throughput, quantitative selection and characterization of nucleic acid aptamers for human angiopoietin-2. Cancer Research. 73: 2227-2227. DOI: 10.1158/1538-7445.Am2013-2227  0.393
2013 Leng N, Dawson JA, Thomson JA, Ruotti V, Rissman AI, Smits BMG, Haag JD, Gould MN, Stewart RM, Kendziorski C. EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments Bioinformatics. 29: 2073-2073. DOI: 10.1093/bioinformatics/btt337  0.341
2013 Zwaka TP, Thomson JA. Homologous Recombination in Human Embryonic Stem Cells Handbook of Stem Cells. 1: 339-345. DOI: 10.1038/Nbt788  0.494
2013 Yu J, Thomson JA. Embryonic Stem Cells: Derivation and Properties Essentials of Stem Cell Biology: Third Edition. 387-398. DOI: 10.1016/B978-0-12-409503-8.00027-5  0.466
2013 Yu J, Thomson JA. Induced Pluripotent Stem Cells Principles of Tissue Engineering: Fourth Edition. 581-594. DOI: 10.1016/B978-0-12-398358-9.00030-6  0.485
2013 Chang HY, Thomson JA, Chen X. Microarray Analysis of Stem Cells and Differentiation Handbook of Stem Cells. 1: 399-407. DOI: 10.1016/B978-0-12-385942-6.00034-2  0.462
2013 Yu J, Thomson JA. Embryonic Stem Cells. Derivation and Properties. Handbook of Stem Cells. 1: 275-286. DOI: 10.1016/B978-0-12-385942-6.00022-6  0.466
2012 Pyke GH, Inouye DW, Thomson JD. Local geographic distributions of bumble bees near Crested Butte, Colorado: competition and community structure revisited. Environmental Entomology. 41: 1332-49. PMID 23321080 DOI: 10.1603/En11284  0.364
2012 Olson CA, Nie J, Diep J, Al-Shyoukh I, Takahashi TT, Al-Mawsawi LQ, Bolin JM, Elwell AL, Swanson S, Stewart R, Thomson JA, Soh HT, Roberts RW, Sun R. Single-round, multiplexed antibody mimetic design through mRNA display. Angewandte Chemie (International Ed. in English). 51: 12449-53. PMID 23125174 DOI: 10.1002/Anie.201207005  0.362
2012 Beers J, Gulbranson DR, George N, Siniscalchi LI, Jones J, Thomson JA, Chen G. Passaging and colony expansion of human pluripotent stem cells by enzyme-free dissociation in chemically defined culture conditions. Nature Protocols. 7: 2029-40. PMID 23099485 DOI: 10.1038/Nprot.2012.130  0.467
2012 Davies SG, Lee JA, Roberts PM, Stonehouse JP, Thomson JE. Absolute configuration assignment by asymmetric syntheses of the homalium alkaloids (-)-(R,R,R)-hoprominol and (-)-(4'S,4″R,2‴R)-hopromalinol. The Journal of Organic Chemistry. 77: 9724-37. PMID 23046316 DOI: 10.1021/Jo301830J  0.362
2012 Choi KD, Vodyanik MA, Togarrati PP, Suknuntha K, Kumar A, Samarjeet F, Probasco MD, Tian S, Stewart R, Thomson JA, Slukvin II. Identification of the hemogenic endothelial progenitor and its direct precursor in human pluripotent stem cell differentiation cultures. Cell Reports. 2: 553-67. PMID 22981233 DOI: 10.1016/J.Celrep.2012.08.002  0.489
2012 Zhang J, Klos M, Wilson GF, Herman AM, Lian X, Raval KK, Barron MR, Hou L, Soerens AG, Yu J, Palecek SP, Lyons GE, Thomson JA, Herron TJ, Jalife J, et al. Extracellular matrix promotes highly efficient cardiac differentiation of human pluripotent stem cells: the matrix sandwich method. Circulation Research. 111: 1125-36. PMID 22912385 DOI: 10.1161/Circresaha.112.273144  0.434
2012 Davies SG, Lee JA, Roberts PM, Shah RS, Thomson JE. (-)-(S)-Nakinadine B: first asymmetric synthesis. Chemical Communications (Cambridge, England). 48: 9236-8. PMID 22871802 DOI: 10.1039/c2cc34808j  0.379
2012 Brock EA, Davies SG, Lee JA, Roberts PM, Thomson JE. Asymmetric synthesis of the tropane alkaloid (+)-pseudococaine via ring-closing iodoamination. Organic Letters. 14: 4278-81. PMID 22866940 DOI: 10.1021/Ol3020607  0.382
2012 Davies SG, Lee JA, Roberts PM, Stonehouse JP, Thomson JE. Asymmetric syntheses of the homalium alkaloids (-)-(S,S)-homaline and (-)-(R,R)-hopromine. The Journal of Organic Chemistry. 77: 7028-45. PMID 22827544 DOI: 10.1021/Jo3012732  0.367
2012 Brennan MB, Claridge TD, Compton RG, Davies SG, Fletcher AM, Henstridge MC, Hewings DS, Kurosawa W, Lee JA, Roberts PM, Schoonen AK, Thomson JE. Ammonium-directed olefinic epoxidation: kinetic and mechanistic insights. The Journal of Organic Chemistry. 77: 7241-61. PMID 22827448 DOI: 10.1021/Jo3010556  0.394
2012 Cresswell AJ, Davies SG, Lee JA, Morris MJ, Roberts PM, Thomson JE. Diastereodivergent hydroxyfluorination of cyclic and acyclic allylic amines: synthesis of 4-deoxy-4-fluorophytosphingosines. The Journal of Organic Chemistry. 77: 7262-81. PMID 22827338 DOI: 10.1021/Jo301056R  0.378
2012 Buonocore S, Sawh-Martinez R, Emerson JW, Mohan P, Dymarczyk M, Thomson JG. The effects of edema and self-adherent wrap on the work of flexion in a cadaveric hand. The Journal of Hand Surgery. 37: 1349-55. PMID 22633224 DOI: 10.1016/J.Jhsa.2012.03.038  0.34
2012 Gong Q, Wang J, Ahmad KM, Csordas AT, Zhou J, Nie J, Stewart R, Thomson JA, Rossi JJ, Soh HT. Selection strategy to generate aptamer pairs that bind to distinct sites on protein targets. Analytical Chemistry. 84: 5365-71. PMID 22624874 DOI: 10.1021/Ac300873P  0.381
2012 Bailey DJ, Rose CM, McAlister GC, Brumbaugh J, Yu P, Wenger CD, Westphall MS, Thomson JA, Coon JJ. Instant spectral assignment for advanced decision tree-driven mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 109: 8411-6. PMID 22586074 DOI: 10.1073/Pnas.1205292109  0.347
2012 Davies SG, Foster EM, Frost AB, Lee JA, Roberts PM, Thomson JE. On the origins of diastereoselectivity in the conjugate additions of the antipodes of lithium N-benzyl-(N-α-methylbenzyl)amide to enantiopure cis- and trans-dioxolane containing α,β-unsaturated esters. Organic & Biomolecular Chemistry. 10: 6186-200. PMID 22531950 DOI: 10.1039/C2Ob25099C  0.376
2012 Brumbaugh J, Hou Z, Russell JD, Howden SE, Yu P, Ledvina AR, Coon JJ, Thomson JA. Phosphorylation regulates human OCT4. Proceedings of the National Academy of Sciences of the United States of America. 109: 7162-8. PMID 22474382 DOI: 10.1073/Pnas.1203874109  0.384
2012 Thomson JG, Chan R, Smith J, Thilmony R, Yau YY, Wang Y, Ow DW. The Bxb1 recombination system demonstrates heritable transmission of site-specific excision in Arabidopsis. Bmc Biotechnology. 12: 9. PMID 22436504 DOI: 10.1186/1472-6750-12-9  0.389
2012 Davies SG, Fletcher AM, Lee JA, Roberts PM, Russell AJ, Taylor RJ, Thomson AD, Thomson JE. Polysubstituted piperidines via iodolactonization: application to the asymmetric synthesis of (+)-pseudodistomin D. Organic Letters. 14: 1672-5. PMID 22416848 DOI: 10.1021/Ol300209S  0.378
2012 Amos JN, Bennett AF, Mac Nally R, Newell G, Pavlova A, Radford JQ, Thomson JR, White M, Sunnucks P. Predicting landscape-genetic consequences of habitat loss, fragmentation and mobility for multiple species of woodland birds. Plos One. 7: e30888. PMID 22363508 DOI: 10.1371/Journal.Pone.0030888  0.379
2012 Chen G, Gulbranson DR, Yu P, Hou Z, Thomson JA. Thermal stability of fibroblast growth factor protein is a determinant factor in regulating self-renewal, differentiation, and reprogramming in human pluripotent stem cells. Stem Cells (Dayton, Ohio). 30: 623-30. PMID 22213113 DOI: 10.1002/Stem.1021  0.429
2012 Feng X, Zhang J, Smuga-Otto K, Tian S, Yu J, Stewart R, Thomson JA. Protein kinase C mediated extraembryonic endoderm differentiation of human embryonic stem cells. Stem Cells (Dayton, Ohio). 30: 461-70. PMID 22213079 DOI: 10.1002/Stem.1018  0.483
2012 Davies SG, Lee JA, Roberts PM, Thomson JE, Yin J. Parallel kinetic resolution of acyclic γ-amino-α,β-unsaturated esters: application to the asymmetric synthesis of 4-aminopyrrolidin-2-ones. Organic Letters. 14: 218-21. PMID 22149591 DOI: 10.1021/Ol203011U  0.368
2012 Castellanos MC, Wilson P, Thomson JD. Dynamic nectar replenishment in flowers of Penstemon (Scrophulariaceae). American Journal of Botany. 89: 111-8. PMID 21669718 DOI: 10.3732/ajb.89.1.111  0.366
2012 Liu YJ, Thomson JG. Ideal anthropomorphic values of the female breast: correlation of pluralistic aesthetic evaluations with objective measurements. Annals of Plastic Surgery. 67: 7-11. PMID 21301308 DOI: 10.1097/SAP.0b013e3181f77ab5  0.323
2012 Mattis V, Svendsen S, Ebert A, Svendsen C, King A, Casale M, Winokur S, Batugedara G, Vawter M, Donovan P, Lock L, Thompson L, Zhu Y, Fossale E, Atwal R, ... ... Thomson J, et al. A11 Induced pluripotent stem cells for basic and translational research on HD Journal of Neurology, Neurosurgery & Psychiatry. 83: A3.2-A4. DOI: 10.1136/Jnnp-2012-303524.11  0.483
2012 Mattis VB, Svendsen SP, Ebert A, Svendsen CN, King AR, Casale M, Winokur ST, Batugedara G, Vawter M, Donovan PJ, Lock LF, Thompson LM, Zhu Y, Fossale E, Atwal RS, ... ... Thomson JA, et al. Induced pluripotent stem cells from patients with huntington’s disease show CAG repeat expansion associated phenotypes Cell Stem Cell. 11: 264-278. DOI: 10.1016/J.Stem.2012.04.027  0.463
2011 Kuan PF, Chung D, Pan G, Thomson JA, Stewart R, Keleş S. A Statistical Framework for the Analysis of ChIP-Seq Data. Journal of the American Statistical Association. 106: 891-903. PMID 26478641 DOI: 10.1198/Jasa.2011.Ap09706  0.382
2011 Sengupta S, Bolin JM, Ruotti V, Nguyen BK, Thomson JA, Elwell AL, Stewart R. Single read and paired end mRNA-Seq Illumina libraries from 10 nanograms total RNA. Journal of Visualized Experiments : Jove. e3340. PMID 22064688 DOI: 10.3791/3340  0.392
2011 Brumbaugh J, Rose CM, Phanstiel DH, Thomson JA, Coon JJ. Proteomics and pluripotency. Critical Reviews in Biochemistry and Molecular Biology. 46: 493-506. PMID 21999516 DOI: 10.3109/10409238.2011.624491  0.446
2011 Phanstiel DH, Brumbaugh J, Wenger CD, Tian S, Probasco MD, Bailey DJ, Swaney DL, Tervo MA, Bolin JM, Ruotti V, Stewart R, Thomson JA, Coon JJ. Proteomic and phosphoproteomic comparison of human ES and iPS cells. Nature Methods. 8: 821-7. PMID 21983960 DOI: 10.1038/Nmeth.1699  0.476
2011 Ma J, Guo L, Fiene SJ, Anson BD, Thomson JA, Kamp TJ, Kolaja KL, Swanson BJ, January CT. High purity human-induced pluripotent stem cell-derived cardiomyocytes: electrophysiological properties of action potentials and ionic currents. American Journal of Physiology. Heart and Circulatory Physiology. 301: H2006-17. PMID 21890694 DOI: 10.1152/Ajpheart.00694.2011  0.435
2011 Hawkins RD, Hon GC, Yang C, Antosiewicz-Bourget JE, Lee LK, Ngo QM, Klugman S, Ching KA, Edsall LE, Ye Z, Kuan S, Yu P, Liu H, Zhang X, Green RD, ... ... Thomson JA, et al. Dynamic chromatin states in human ES cells reveal potential regulatory sequences and genes involved in pluripotency. Cell Research. 21: 1393-409. PMID 21876557 DOI: 10.1038/Cr.2011.146  0.488
2011 Rajesh D, Dickerson SJ, Yu J, Brown ME, Thomson JA, Seay NJ. Human lymphoblastoid B-cell lines reprogrammed to EBV-free induced pluripotent stem cells. Blood. 118: 1797-800. PMID 21708888 DOI: 10.1182/Blood-2011-01-332064  0.469
2011 Meyer JS, Howden SE, Wallace KA, Verhoeven AD, Wright LS, Capowski EE, Pinilla I, Martin JM, Tian S, Stewart R, Pattnaik B, Thomson JA, Gamm DM. Optic vesicle-like structures derived from human pluripotent stem cells facilitate a customized approach to retinal disease treatment. Stem Cells (Dayton, Ohio). 29: 1206-18. PMID 21678528 DOI: 10.1002/Stem.674  0.477
2011 Forrest JR, Ogilvie JE, Gorischek AM, Thomson JD. Seasonal change in a pollinator community and the maintenance of style length variation in Mertensia fusiformis (Boraginaceae). Annals of Botany. 108: 1-12. PMID 21515606 DOI: 10.1093/aob/mcr093  0.375
2011 Nie J, Stewart R, Zhang H, Thomson JA, Ruan F, Cui X, Wei H. TF-Cluster: a pipeline for identifying functionally coordinated transcription factors via network decomposition of the shared coexpression connectivity matrix (SCCM). Bmc Systems Biology. 5: 53. PMID 21496241 DOI: 10.1186/1752-0509-5-53  0.399
2011 Cresswell AJ, Davies SG, Lee JA, Morris MJ, Roberts PM, Thomson JE. Ring-opening hydrofluorination of 2,3- and 3,4-epoxy amines by HBF4·OEt2: application to the asymmetric synthesis of (S,S)-3-deoxy-3-fluorosafingol. The Journal of Organic Chemistry. 76: 4617-27. PMID 21495698 DOI: 10.1021/Jo200517W  0.367
2011 Bentley SA, Davies SG, Lee JA, Roberts PM, Thomson JE. Conjugate addition of lithium N-phenyl-N-(α-methylbenzyl)amide: application to the asymmetric synthesis of (R)-(-)-angustureine. Organic Letters. 13: 2544-7. PMID 21495642 DOI: 10.1021/ol200625h  0.379
2011 Csatayová K, Davies SG, Lee JA, Roberts PM, Russell AJ, Thomson JE, Wilson DL. Highly diastereoselective and stereodivergent dihydroxylations of acyclic allylic amines: application to the asymmetric synthesis of 3,6-dideoxy-3-amino-L-talose. Organic Letters. 13: 2606-9. PMID 21488631 DOI: 10.1021/Ol200717N  0.361
2011 Chen G, Gulbranson DR, Hou Z, Bolin JM, Ruotti V, Probasco MD, Smuga-Otto K, Howden SE, Diol NR, Propson NE, Wagner R, Lee GO, Antosiewicz-Bourget J, Teng JM, Thomson JA. Chemically defined conditions for human iPSC derivation and culture. Nature Methods. 8: 424-9. PMID 21478862 DOI: 10.1038/Nmeth.1593  0.461
2011 Howden SE, Gore A, Li Z, Fung HL, Nisler BS, Nie J, Chen G, McIntosh BE, Gulbranson DR, Diol NR, Taapken SM, Vereide DT, Montgomery KD, Zhang K, Gamm DM, ... Thomson JA, et al. Genetic correction and analysis of induced pluripotent stem cells from a patient with gyrate atrophy. Proceedings of the National Academy of Sciences of the United States of America. 108: 6537-42. PMID 21464322 DOI: 10.1073/Pnas.1103388108  0.44
2011 Dias J, Gumenyuk M, Kang H, Vodyanik M, Yu J, Thomson JA, Slukvin II. Generation of red blood cells from human induced pluripotent stem cells. Stem Cells and Development. 20: 1639-47. PMID 21434814 DOI: 10.1089/Scd.2011.0078  0.51
2011 Brock EA, Davies SG, Lee JA, Roberts PM, Thomson JE. Asymmetric synthesis of polyhydroxylated pyrrolizidines via transannular iodoamination with concomitant N-debenzylation. Organic Letters. 13: 1594-7. PMID 21370868 DOI: 10.1021/Ol103090Z  0.386
2011 Gore A, Li Z, Fung HL, Young JE, Agarwal S, Antosiewicz-Bourget J, Canto I, Giorgetti A, Israel MA, Kiskinis E, Lee JH, Loh YH, Manos PD, Montserrat N, Panopoulos AD, ... ... Thomson JA, et al. Somatic coding mutations in human induced pluripotent stem cells. Nature. 471: 63-7. PMID 21368825 DOI: 10.1038/Nature09805  0.445
2011 Thomson JG, Cook M, Guttman M, Smith J, Thilmony R. Novel sulI binary vectors enable an inexpensive foliar selection method in Arabidopsis. Bmc Research Notes. 4: 44. PMID 21366919 DOI: 10.1186/1756-0500-4-44  0.389
2011 Yu P, Pan G, Yu J, Thomson JA. FGF2 sustains NANOG and switches the outcome of BMP4-induced human embryonic stem cell differentiation. Cell Stem Cell. 8: 326-34. PMID 21362572 DOI: 10.1016/J.Stem.2011.01.001  0.442
2011 Moon HS, Abercrombie LL, Eda S, Blanvillain R, Thomson JG, Ow DW, Stewart CN. Transgene excision in pollen using a codon optimized serine resolvase CinH-RS2 site-specific recombination system. Plant Molecular Biology. 75: 621-31. PMID 21359553 DOI: 10.1007/s11103-011-9756-2  0.382
2011 Hu K, Yu J, Suknuntha K, Tian S, Montgomery K, Choi KD, Stewart R, Thomson JA, Slukvin II. Efficient generation of transgene-free induced pluripotent stem cells from normal and neoplastic bone marrow and cord blood mononuclear cells. Blood. 117: e109-19. PMID 21296996 DOI: 10.1182/Blood-2010-07-298331  0.483
2011 Lister R, Pelizzola M, Kida YS, Hawkins RD, Nery JR, Hon G, Antosiewicz-Bourget J, O'Malley R, Castanon R, Klugman S, Downes M, Yu R, Stewart R, Ren B, Thomson JA, et al. Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells. Nature. 471: 68-73. PMID 21289626 DOI: 10.1038/Nature09798  0.474
2011 Yau YY, Wang Y, Thomson JG, Ow DW. Method for Bxb1-mediated site-specific integration in planta. Methods in Molecular Biology (Clifton, N.J.). 701: 147-66. PMID 21181529 DOI: 10.1007/978-1-61737-957-4_8  0.389
2011 Wang Y, Yau YY, Perkins-Balding D, Thomson JG. Recombinase technology: applications and possibilities. Plant Cell Reports. 30: 267-85. PMID 20972794 DOI: 10.1007/s00299-010-0938-1  0.328
2011 Thomson JD. Flowering phenology, fruiting success and progressive deterioration of pollination in an early-flowering geophyte. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 365: 3187-99. PMID 20819812 DOI: 10.1098/rstb.2010.0115  0.369
2011 Choi K, Vodyanik M, Tian S, Stewart R, Thomson J, Slukvin I. Identification of Hemogenic Endothelium and Its Direct Precursor in Human Embryonic Stem Cell Differentiation Cultures Blood. 118: 1277-1277. DOI: 10.1182/Blood.V118.21.1277.1277  0.43
2011 Atala A, Lanza R, Thomson JA, Nerem RM. Principles of Regenerative Medicine Principles of Regenerative Medicine 0.38
2010 Sengupta S, Ruotti V, Bolin J, Elwell A, Hernandez A, Thomson J, Stewart R. Highly consistent, fully representative mRNA-Seq libraries from ten nanograms of total RNA. Biotechniques. 49: 898-904. PMID 21143212 DOI: 10.2144/000113556  0.365
2010 Vodyanik MA, Yu J, Zhang X, Tian S, Stewart R, Thomson JA, Slukvin II. A mesoderm-derived precursor for mesenchymal stem and endothelial cells. Cell Stem Cell. 7: 718-29. PMID 21112566 DOI: 10.1016/J.Stem.2010.11.011  0.493
2010 Bagal SK, Davies SG, Lee JA, Roberts PM, Scott PM, Thomson JE. Syntheses of the enantiomers of 1-deoxynojirimycin and 1-deoxyaltronojirimycin via chemo- and diastereoselective olefinic oxidation of unsaturated amines. The Journal of Organic Chemistry. 75: 8133-46. PMID 21043433 DOI: 10.1021/Jo101756G  0.363
2010 Davies SG, Fletcher AM, Kurosawa W, Lee JA, Poce G, Roberts PM, Thomson JE, Williamson DM. One-pot conversions of olefins to cyclic carbonates and secondary allylic and homoallylic amines to cyclic carbamates. The Journal of Organic Chemistry. 75: 7745-56. PMID 20954691 DOI: 10.1021/jo101614f  0.36
2010 Bernstein BE, Stamatoyannopoulos JA, Costello JF, Ren B, Milosavljevic A, Meissner A, Kellis M, Marra MA, Beaudet AL, Ecker JR, Farnham PJ, Hirst M, Lander ES, Mikkelsen TS, Thomson JA. The NIH Roadmap Epigenomics Mapping Consortium. Nature Biotechnology. 28: 1045-8. PMID 20944595 DOI: 10.1038/Nbt1010-1045  0.392
2010 Elliott MA, Thomson JA. The social cognitive determinants of offending drivers' speeding behaviour. Accident; Analysis and Prevention. 42: 1595-605. PMID 20728608 DOI: 10.1016/j.aap.2010.03.018  0.341
2010 Cho M, Xiao Y, Nie J, Stewart R, Csordas AT, Oh SS, Thomson JA, Soh HT. Quantitative selection of DNA aptamers through microfluidic selection and high-throughput sequencing. Proceedings of the National Academy of Sciences of the United States of America. 107: 15373-8. PMID 20705898 DOI: 10.1073/Pnas.1009331107  0.38
2010 Chen G, Hou Z, Gulbranson DR, Thomson JA. Actin-myosin contractility is responsible for the reduced viability of dissociated human embryonic stem cells. Cell Stem Cell. 7: 240-8. PMID 20682449 DOI: 10.1016/J.Stem.2010.06.017  0.429
2010 Thomson JR, Kimmerer WJ, Brown LR, Newman KB, Mac Nally R, Bennett WA, Feyrer F, Fleishman E. Bayesian change point analysis of abundance trends for pelagic fishes in the upper San Francisco Estuary. Ecological Applications : a Publication of the Ecological Society of America. 20: 1431-48. PMID 20666259 DOI: 10.1890/09-0998.1  0.362
2010 Mac Nally R, Thomson JR, Kimmerer WJ, Feyrer F, Newman KB, Sih A, Bennett WA, Brown L, Fleishman E, Culberson SD, Castillo G. Analysis of pelagic species decline in the upper San Francisco Estuary using multivariate autoregressive modeling (MAR). Ecological Applications : a Publication of the Ecological Society of America. 20: 1417-30. PMID 20666258 DOI: 10.1890/09-1724.1  0.365
2010 Schmidt D, Spring D, Mac Nally R, Thomson JR, Brook BW, Cacho O, McKenzie M. Finding needles (or ants) in haystacks: predicting locations of invasive organisms to inform eradication and containment. Ecological Applications : a Publication of the Ecological Society of America. 20: 1217-27. PMID 20666245 DOI: 10.1890/09-0838.1  0.367
2010 Barallon R, Bauer SR, Butler J, Capes-Davis A, Dirks WG, Elmore E, Furtado M, Kline MC, Kohara A, Los GV, MacLeod RA, Masters JR, Nardone M, Nardone RM, Nims RW, ... ... Thomson J, et al. Recommendation of short tandem repeat profiling for authenticating human cell lines, stem cells, and tissues. In Vitro Cellular & Developmental Biology. Animal. 46: 727-32. PMID 20614197 DOI: 10.1007/s11626-010-9333-z  0.457
2010 Csatayová K, Davies SG, Lee JA, Ling KB, Roberts PM, Russell AJ, Thomson JE. Syntheses of trans-SCH-A and cis-SCH-A via a stereodivergent cyclopropanation protocol. Organic Letters. 12: 3152-5. PMID 20552964 DOI: 10.1021/Ol101295T  0.355
2010 Cresswell AJ, Davies SG, Lee JA, Roberts PM, Russell AJ, Thomson JE, Tyte MJ. Beta-fluoroamphetamines via the stereoselective synthesis of benzylic fluorides. Organic Letters. 12: 2936-9. PMID 20509635 DOI: 10.1021/Ol100862S  0.37
2010 Hawkins RD, Hon GC, Lee LK, Ngo Q, Lister R, Pelizzola M, Edsall LE, Kuan S, Luu Y, Klugman S, Antosiewicz-Bourget J, Ye Z, Espinoza C, Agarwahl S, Shen L, ... ... Thomson JA, et al. Distinct epigenomic landscapes of pluripotent and lineage-committed human cells. Cell Stem Cell. 6: 479-91. PMID 20452322 DOI: 10.1016/J.Stem.2010.03.018  0.467
2010 Muchhala N, Thomson JD. Fur versus feathers: pollen delivery by bats and hummingbirds and consequences for pollen production. The American Naturalist. 175: 717-26. PMID 20408751 DOI: 10.1086/652473  0.379
2010 Forrest J, Inouye DW, Thomson JD. Flowering phenology in subalpine meadows: does climate variation influence community co-flowering patterns? Ecology. 91: 431-40. PMID 20392008 DOI: 10.1890/09-0099.1  0.372
2010 Dong L, Marakovits J, Hou X, Guo C, Greasley S, Dagostino E, Ferre R, Johnson MC, Kraynov E, Thomson J, Pathak V, Murray BW. Structure-based design of novel human Pin1 inhibitors (II). Bioorganic & Medicinal Chemistry Letters. 20: 2210-4. PMID 20207139 DOI: 10.1016/j.bmcl.2010.02.033  0.367
2010 Thomson JG, Chan R, Thilmony R, Yau YY, Ow DW. PhiC31 recombination system demonstrates heritable germinal transmission of site-specific excision from the Arabidopsis genome. Bmc Biotechnology. 10: 17. PMID 20178628 DOI: 10.1186/1472-6750-10-17  0.365
2010 Winkler T, Cantilena A, Métais JY, Xu X, Nguyen AD, Borate B, Antosiewicz-Bourget JE, Wolfsberg TG, Thomson JA, Dunbar CE. No evidence for clonal selection due to lentiviral integration sites in human induced pluripotent stem cells. Stem Cells (Dayton, Ohio). 28: 687-94. PMID 20166152 DOI: 10.1002/Stem.322  0.487
2010 Hu BY, Weick JP, Yu J, Ma LX, Zhang XQ, Thomson JA, Zhang SC. Neural differentiation of human induced pluripotent stem cells follows developmental principles but with variable potency. Proceedings of the National Academy of Sciences of the United States of America. 107: 4335-40. PMID 20160098 DOI: 10.1073/Pnas.0910012107  0.493
2010 Coote SJ, Davies SG, Fletcher AM, Roberts PM, Thomson JE. Enantiospecific stereodivergent synthesis of trans- and cis-N(2),3-dimethyl-4-phenyl-1,2,3,4-tetrahydroisoquinolines. Chemistry, An Asian Journal. 5: 589-604. PMID 20146283 DOI: 10.1002/Asia.200900470  0.378
2010 Davies SG, Goodwin CJ, Hepworth D, Roberts PM, Thomson JE. On the origins of diastereoselectivity in the alkylation of enolates derived from N-1-(1'-naphthyl)ethyl-O-tert-butylhydroxamates: chiral Weinreb amide equivalents. The Journal of Organic Chemistry. 75: 1214-27. PMID 20095549 DOI: 10.1021/Jo902499S  0.368
2010 Spring D, Baum J, Nally RM, Mackenzie M, Sanchez-Azofeifa A, Thomson JR. Building a regionally connected reserve network in a changing and uncertain world. Conservation Biology : the Journal of the Society For Conservation Biology. 24: 691-700. PMID 20067494 DOI: 10.1111/J.1523-1739.2009.01419.X  0.359
2010 Li B, Ruotti V, Stewart RM, Thomson JA, Dewey CN. RNA-Seq gene expression estimation with read mapping uncertainty. Bioinformatics (Oxford, England). 26: 493-500. PMID 20022975 DOI: 10.1093/Bioinformatics/Btp692  0.38
2010 Bagal SK, Davies SG, Lee JA, Roberts PM, Russell AJ, Scott PM, Thomson JE. An oxidation and ring contraction approach to the synthesis of (+/-)-1-deoxynojirimycin and (+/-)-1-deoxyaltronojirimycin. Organic Letters. 12: 136-9. PMID 19954199 DOI: 10.1021/Ol902533B  0.373
2010 Mohr JC, Zhang J, Azarin SM, Soerens AG, de Pablo JJ, Thomson JA, Lyons GE, Palecek SP, Kamp TJ. The microwell control of embryoid body size in order to regulate cardiac differentiation of human embryonic stem cells. Biomaterials. 31: 1885-93. PMID 19945747 DOI: 10.1016/J.Biomaterials.2009.11.033  0.458
2009 Forrest J, Thomson JD. Consequences of variation in flowering time within and among individuals of Mertensia fusiformis (Boraginaceae), an early spring wildflower. American Journal of Botany. 97: 38-48. PMID 21622365 DOI: 10.3732/ajb.0900083  0.381
2009 Stotz HU, Thomson JG, Wang Y. Plant defensins: defense, development and application. Plant Signaling & Behavior. 4: 1010-2. PMID 20009545 DOI: 10.4161/psb.4.11.9755  0.373
2009 Lister R, Pelizzola M, Dowen RH, Hawkins RD, Hon G, Tonti-Filippini J, Nery JR, Lee L, Ye Z, Ngo QM, Edsall L, Antosiewicz-Bourget J, Stewart R, Ruotti V, Millar AH, ... Thomson JA, et al. Human DNA methylomes at base resolution show widespread epigenomic differences. Nature. 462: 315-22. PMID 19829295 DOI: 10.1038/Nature08514  0.464
2009 Thilmony R, Guttman M, Thomson JG, Blechl AE. The LP2 leucine-rich repeat receptor kinase gene promoter directs organ-specific, light-responsive expression in transgenic rice. Plant Biotechnology Journal. 7: 867-82. PMID 19781006 DOI: 10.1111/j.1467-7652.2009.00449.x  0.41
2009 Guo C, Hou X, Dong L, Dagostino E, Greasley S, Ferre R, Marakovits J, Johnson MC, Matthews D, Mroczkowski B, Parge H, Vanarsdale T, Popoff I, Piraino J, Margosiak S, ... Thomson J, et al. Structure-based design of novel human Pin1 inhibitors (I). Bioorganic & Medicinal Chemistry Letters. 19: 5613-6. PMID 19729306 DOI: 10.1016/J.Bmcl.2009.08.034  0.371
2009 Manson JS, Otterstatter MC, Thomson JD. Consumption of a nectar alkaloid reduces pathogen load in bumble bees. Oecologia. 162: 81-9. PMID 19711104 DOI: 10.1007/s00442-009-1431-9  0.355
2009 Bond CW, Cresswell AJ, Davies SG, Fletcher AM, Kurosawa W, Lee JA, Roberts PM, Russell AJ, Smith AD, Thomson JE. Ammonium-directed oxidation of cyclic allylic and homoallylic amines. The Journal of Organic Chemistry. 74: 6735-48. PMID 19642691 DOI: 10.5059/Yukigoseikyokaishi.68.1295  0.368
2009 Chernega AN, Davies SG, Goodwin CJ, Hepworth D, Kurosawa W, Roberts PM, Thomson JE. The chiral auxiliary N-1-(1'-naphthyl)ethyl-O-tert-butylhydroxylamine: a chiral Weinreb amide equivalent. Organic Letters. 11: 3254-7. PMID 19606853 DOI: 10.1021/ol901174t  0.377
2009 Sengupta S, Nie J, Wagner RJ, Yang C, Stewart R, Thomson JA. MicroRNA 92b controls the G1/S checkpoint gene p57 in human embryonic stem cells. Stem Cells (Dayton, Ohio). 27: 1524-8. PMID 19544458 DOI: 10.1002/Stem.84  0.398
2009 Davies SG, Garner AC, Nicholson RL, Osborne J, Roberts PM, Savory ED, Smith AD, Thomson JE. Doubly diastereoselective [3,3]-sigmatropic aza-Claisen rearrangements. Organic & Biomolecular Chemistry. 7: 2604-11. PMID 19503936 DOI: 10.1039/B902753J  0.368
2009 Forrest J, Thomson JD. Background complexity affects colour preference in bumblebees. Die Naturwissenschaften. 96: 921-5. PMID 19444425 DOI: 10.1007/s00114-009-0549-2  0.367
2009 Xu N, Papagiannakopoulos T, Pan G, Thomson JA, Kosik KS. MicroRNA-145 regulates OCT4, SOX2, and KLF4 and represses pluripotency in human embryonic stem cells. Cell. 137: 647-58. PMID 19409607 DOI: 10.1016/J.Cell.2009.02.038  0.384
2009 Ohashi K, Thomson JD. Trapline foraging by pollinators: its ontogeny, economics and possible consequences for plants. Annals of Botany. 103: 1365-78. PMID 19398446 DOI: 10.1093/Aob/Mcp088  0.372
2009 Kim YJ, Teletia N, Ruotti V, Maher CA, Chinnaiyan AM, Stewart R, Thomson JA, Patel JM. ProbeMatch: rapid alignment of oligonucleotides to genome allowing both gaps and mismatches. Bioinformatics (Oxford, England). 25: 1424-5. PMID 19351619 DOI: 10.1093/Bioinformatics/Btp178  0.371
2009 Davies SG, Mujtaba N, Roberts PM, Smith AD, Thomson JE. A tandem conjugate addition/cyclization protocol for the asymmetric synthesis of 2-aryl-4-aminotetrahydroquinoline-3-carboxylic acid derivatives. Organic Letters. 11: 1959-62. PMID 19348467 DOI: 10.1021/Ol9004118  0.39
2009 Deng J, Shoemaker R, Xie B, Gore A, LeProust EM, Antosiewicz-Bourget J, Egli D, Maherali N, Park IH, Yu J, Daley GQ, Eggan K, Hochedlinger K, Thomson J, Wang W, et al. Targeted bisulfite sequencing reveals changes in DNA methylation associated with nuclear reprogramming. Nature Biotechnology. 27: 353-60. PMID 19330000 DOI: 10.1038/Nbt.1530  0.44
2009 Yu J, Hu K, Smuga-Otto K, Tian S, Stewart R, Slukvin II, Thomson JA. Human induced pluripotent stem cells free of vector and transgene sequences. Science (New York, N.Y.). 324: 797-801. PMID 19325077 DOI: 10.1126/Science.1172482  0.495
2009 Muchhala N, Thomson JD. Going to great lengths: selection for long corolla tubes in an extremely specialized bat-flower mutualism. Proceedings. Biological Sciences / the Royal Society. 276: 2147-52. PMID 19324745 DOI: 10.1098/Rspb.2009.0102  0.364
2009 Heintzman ND, Hon GC, Hawkins RD, Kheradpour P, Stark A, Harp LF, Ye Z, Lee LK, Stuart RK, Ching CW, Ching KA, Antosiewicz-Bourget JE, Liu H, Zhang X, Green RD, ... ... Thomson JA, et al. Histone modifications at human enhancers reflect global cell-type-specific gene expression. Nature. 459: 108-12. PMID 19295514 DOI: 10.1038/Nature07829  0.46
2009 Choi KD, Yu J, Smuga-Otto K, Salvagiotto G, Rehrauer W, Vodyanik M, Thomson J, Slukvin I. Hematopoietic and endothelial differentiation of human induced pluripotent stem cells. Stem Cells (Dayton, Ohio). 27: 559-67. PMID 19259936 DOI: 10.1634/Stemcells.2008-0922  0.458
2009 Zhang J, Wilson GF, Soerens AG, Koonce CH, Yu J, Palecek SP, Thomson JA, Kamp TJ. Functional cardiomyocytes derived from human induced pluripotent stem cells. Circulation Research. 104: e30-41. PMID 19213953 DOI: 10.1161/Circresaha.108.192237  0.499
2009 Aciro C, Davies SG, Kurosawa W, Roberts PM, Russell AJ, Thomson JE. Highly diastereoselective anti-dihydroxylation of 3-N,N-dibenzylaminocyclohex-1-ene N-oxide. Organic Letters. 11: 1333-6. PMID 19209907 DOI: 10.1021/Ol900114B  0.351
2009 Alonso F, Davies SG, Elend AS, Leech MA, Roberts PM, Smith AD, Thomson JE. Stereoselective functionalisation of cis- and trans-2-ferrocenyl-3-pivaloyl-4-alkyl-1,3-oxazolidin-5-ones: asymmetric synthesis of (R)- and (S)-2-alkyl-2-aminopent-4-enoic acids and (2R,3S)-2-amino-2-methyl-3-hydroxy-3-phenylpropanoic acid. Organic & Biomolecular Chemistry. 7: 527-36. PMID 19156319 DOI: 10.1039/B814453B  0.374
2009 Swaney DL, Wenger CD, Thomson JA, Coon JJ. Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 106: 995-1000. PMID 19144917 DOI: 10.1073/Pnas.0811964106  0.446
2009 Muchhala N, Caiza A, Vizuete JC, Thomson JD. A generalized pollination system in the tropics: bats, birds and Aphelandra acanthus. Annals of Botany. 103: 1481-7. PMID 19131378 DOI: 10.1093/Aob/Mcn260  0.385
2009 Forrest J, Thomson JD. Pollinator experience, neophobia and the evolution of flowering time. Proceedings. Biological Sciences. 276: 935-43. PMID 19129131 DOI: 10.1098/rspb.2008.1434  0.386
2009 Ebert AD, Yu J, Rose FF, Mattis VB, Lorson CL, Thomson JA, Svendsen CN. Induced pluripotent stem cells from a spinal muscular atrophy patient. Nature. 457: 277-80. PMID 19098894 DOI: 10.1038/Nature07677  0.421
2009 Thomson J. Celebrating 10 years of hESC lines: an interview with James Thomson. [Interviewed by Miodrag Stojkovíc and Susan Rainey Daher]. Stem Cells (Dayton, Ohio). 26: 2747-8. PMID 19005178 DOI: 10.1634/stemcells.2008-0942  0.342
2009 Thomson JG, Yau YY, Blanvillain R, Nunes WM, Chiniquy D, Thilmony R, Ow DW. ParA resolvase catalyzes site-specific excision of DNA from the Arabidopsis genome. Transgenic Research. 18: 237-48. PMID 18704739 DOI: 10.1007/s11248-008-9213-4  0.386
2009 Winkler T, Cantelina AR, Metais J, Xu X, Nguyen A, Wolfsberg T, Antosiewicz-Bourget J, Thomson JA, Dunbar CE. Analysis of Viral Integration Sites in Human Induced Pluripotent Stem Cells. Blood. 114: 1485-1485. DOI: 10.1182/Blood.V114.22.1485.1485  0.479
2009 Yu J, Thomson JA. Induced Pluripotent Stem Cell Derivation Essentials of Stem Cell Biology. 329+331-337. DOI: 10.1016/B978-0-12-374729-7.00037-8  0.466
2008 Selwood K, Mac Nally R, Thomson JR. Native bird breeding in a chronosequence of revegetated sites. Oecologia. 159: 435-46. PMID 19023600 DOI: 10.1007/s00442-008-1221-9  0.377
2008 Salvagiotto G, Zhao Y, Vodyanik M, Ruotti V, Stewart R, Marra M, Thomson J, Eaves C, Slukvin I. Molecular profiling reveals similarities and differences between primitive subsets of hematopoietic cells generated in vitro from human embryonic stem cells and in vivo during embryogenesis Experimental Hematology. 36: 1377-1389. PMID 18922365 DOI: 10.1016/J.Exphem.2008.06.015  0.495
2008 Aciro C, Davies SG, Roberts PM, Russell AJ, Smith AD, Thomson JE. Ammonium-directed dihydroxylation: metal-free synthesis of the diastereoisomers of 3-aminocyclohexane-1,2-diol. Organic & Biomolecular Chemistry. 6: 3762-70. PMID 18843406 DOI: 10.1039/B808812H  0.359
2008 Aciro C, Claridge TD, Davies SG, Roberts PM, Russell AJ, Thomson JE. Ammonium-directed dihydroxylation of 3-aminocyclohex-1-enes: development of a metal-free dihydroxylation protocol. Organic & Biomolecular Chemistry. 6: 3751-61. PMID 18843405 DOI: 10.1039/B808811J  0.362
2008 Levenstein ME, Berggren WT, Lee JE, Conard KR, Llanas RA, Wagner RJ, Smith LM, Thomson JA. Secreted proteoglycans directly mediate human embryonic stem cell-basic fibroblast growth factor 2 interactions critical for proliferation. Stem Cells (Dayton, Ohio). 26: 3099-107. PMID 18802039 DOI: 10.1634/Stemcells.2007-1056  0.465
2008 Bloushtain-Qimron N, Yao J, Snyder EL, Shipitsin M, Campbell LL, Mani SA, Hu M, Chen H, Ustyansky V, Antosiewicz JE, Argani P, Halushka MK, Thomson JA, Pharoah P, Porgador A, et al. Cell type-specific DNA methylation patterns in the human breast. Proceedings of the National Academy of Sciences of the United States of America. 105: 14076-81. PMID 18780791 DOI: 10.1073/Pnas.0805206105  0.48
2008 Xu RH, Sampsell-Barron TL, Gu F, Root S, Peck RM, Pan G, Yu J, Antosiewicz-Bourget J, Tian S, Stewart R, Thomson JA. NANOG is a direct target of TGFbeta/activin-mediated SMAD signaling in human ESCs. Cell Stem Cell. 3: 196-206. PMID 18682241 DOI: 10.1016/J.Stem.2008.07.001  0.414
2008 Yu J, Thomson JA. Pluripotent stem cell lines. Genes & Development. 22: 1987-97. PMID 18676805 DOI: 10.1101/Gad.1689808  0.493
2008 Ananiev GE, Goldstein S, Runnheim R, Forrest DK, Zhou S, Potamousis K, Churas CP, Bergendahl V, Thomson JA, Schwartz DC. Optical mapping discerns genome wide DNA methylation profiles. Bmc Molecular Biology. 9: 68. PMID 18667073 DOI: 10.1186/1471-2199-9-68  0.386
2008 Otterstatter MC, Thomson JD. Does pathogen spillover from commercially reared bumble bees threaten wild pollinators? Plos One. 3: e2771. PMID 18648661 DOI: 10.1371/journal.pone.0002771  0.364
2008 Dejosez M, Krumenacker JS, Zitur LJ, Passeri M, Chu LF, Songyang Z, Thomson JA, Zwaka TP. Ronin is essential for embryogenesis and the pluripotency of mouse embryonic stem cells. Cell. 133: 1162-74. PMID 18585351 DOI: 10.1016/J.Cell.2008.05.047  0.489
2008 Aye Y, Davies SG, Garner AC, Roberts PM, Smith AD, Thomson JE. Parallel kinetic resolution of tert-butyl (RS)-3-oxy-substituted cyclopent-1-ene-carboxylates for the asymmetric synthesis of 3-oxy-substituted cispentacin and transpentacin derivatives. Organic & Biomolecular Chemistry. 6: 2195-203. PMID 18528582 DOI: 10.1039/B802428F  0.372
2008 Fujita J, Crane AM, Souza MK, Dejosez M, Kyba M, Flavell RA, Thomson JA, Zwaka TP. Caspase activity mediates the differentiation of embryonic stem cells. Cell Stem Cell. 2: 595-601. PMID 18522852 DOI: 10.1016/J.Stem.2008.04.001  0.463
2008 Abraham E, Brock EA, Candela-Lena JI, Davies SG, Georgiou M, Nicholson RL, Perkins JH, Roberts PM, Russell AJ, Sánchez-Fernández EM, Scott PM, Smith AD, Thomson JE. Asymmetric synthesis of N,O,O,O-tetra-acetyl d-lyxo-phytosphingosine, jaspine B (pachastrissamine), 2-epi-jaspine B, and deoxoprosophylline via lithium amide conjugate addition. Organic & Biomolecular Chemistry. 6: 1665-73. PMID 18421401 DOI: 10.1039/B801671B  0.357
2008 Wei H, Kuan PF, Tian S, Yang C, Nie J, Sengupta S, Ruotti V, Jonsdottir GA, Keles S, Thomson JA, Stewart R. A study of the relationships between oligonucleotide properties and hybridization signal intensities from NimbleGen microarray datasets. Nucleic Acids Research. 36: 2926-38. PMID 18385155 DOI: 10.1093/Nar/Gkn133  0.373
2008 Phanstiel D, Brumbaugh J, Berggren WT, Conard K, Feng X, Levenstein ME, McAlister GC, Thomson JA, Coon JJ. Mass spectrometry identifies and quantifies 74 unique histone H4 isoforms in differentiating human embryonic stem cells. Proceedings of the National Academy of Sciences of the United States of America. 105: 4093-8. PMID 18326628 DOI: 10.1073/Pnas.0710515105  0.423
2008 Pommer MS, Zhang Y, Keerthi N, Chen D, Thomson JA, Meinhart CD, Soh HT. Dielectrophoretic separation of platelets from diluted whole blood in microfluidic channels. Electrophoresis. 29: 1213-8. PMID 18288670 DOI: 10.1002/Elps.200700607  0.369
2008 Solowiej J, Thomson JA, Ryan K, Luo C, He M, Lou J, Murray BW. Steady-state and pre-steady-state kinetic evaluation of severe acute respiratory syndrome coronavirus (SARS-CoV) 3CLpro cysteine protease: development of an ion-pair model for catalysis. Biochemistry. 47: 2617-30. PMID 18237196 DOI: 10.1021/Bi702107V  0.362
2008 Thomson JA, Yu J. Human Embryonic and Human Induced Pluripotent Stem Cell Lines Journal of Medical Sciences. 1: 106-113. DOI: 10.2174/1996327000801030106  0.462
2008 Choi K, Yu J, Smuga-Otto K, Dias J, Salvagiotto G, Vodyanik M, Thomson J, Slukvin I. Hematopoietic Differentiation of Human Induced Pluripotent Stem Cells Blood. 112: 731-731. DOI: 10.1182/Blood.V112.11.731.731  0.466
2008 Yu J, Vodyanik MA, Smuga-Otto K, Antosiewicz-Bourget J, Frane JL, Tian S, Nie J, Jonsdottir GA, Ruotti V, Stewart R, Slukvin II, Thomson JA. Induced Pluripotent Stem Cell Lines Derived From Human Somatic Cells Obstetrical & Gynecological Survey. 63: 154-155. DOI: 10.1097/01.OGX.0000305193.72586.39  0.48
2008 Dejosez M, Krumenacker JS, Zitur LJ, Passeri M, Chu L, Songyang Z, Thomson JA, Zwaka TP. Ronin Is Essential for Embryogenesis and the Pluripotency of Mouse Embryonic Stem Cells Cell. 134: 692. DOI: 10.1016/j.cell.2008.08.002  0.473
2007 He JQ, January CT, Thomson JA, Kamp TJ. Human embryonic stem cell-derived cardiomyocytes: drug discovery and safety pharmacology. Expert Opinion On Drug Discovery. 2: 739-53. PMID 23488962 DOI: 10.1517/17460441.2.5.739  0.461
2007 Pan G, Tian S, Nie J, Yang C, Ruotti V, Wei H, Jonsdottir GA, Stewart R, Thomson JA. Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells. Cell Stem Cell. 1: 299-312. PMID 18371364 DOI: 10.1016/J.Stem.2007.08.003  0.465
2007 Lee MH, Hook B, Pan G, Kershner AM, Merritt C, Seydoux G, Thomson JA, Wickens M, Kimble J. Conserved regulation of MAP kinase expression by PUF RNA-binding proteins. Plos Genetics. 3: e233. PMID 18166083 DOI: 10.1371/Journal.Pgen.0030233  0.458
2007 Cailleau T, Cooke JW, Davies SG, Ling KB, Naylor A, Nicholson RL, Price PD, Roberts PM, Russell AJ, Smith AD, Thomson JE. Asymmetric synthesis of beta-amino-gamma-substituted-gamma-butyrolactones: double diastereoselective conjugate addition of homochiral lithium amides to homochiral alpha,beta-unsaturated esters. Organic & Biomolecular Chemistry. 5: 3922-31. PMID 18043795 DOI: 10.1039/B712937H  0.354
2007 Yu J, Vodyanik MA, Smuga-Otto K, Antosiewicz-Bourget J, Frane JL, Tian S, Nie J, Jonsdottir GA, Ruotti V, Stewart R, Slukvin II, Thomson JA. Induced pluripotent stem cell lines derived from human somatic cells. Science (New York, N.Y.). 318: 1917-20. PMID 18029452 DOI: 10.1126/Science.1151526  0.505
2007 Davies SG, Ling KB, Roberts PM, Russell AJ, Thomson JE. Diastereoselective Simmons-Smith cyclopropanations of allylic amines and carbamates. Chemical Communications (Cambridge, England). 4029-31. PMID 17912405 DOI: 10.1039/B711358G  0.361
2007 Wilson P, Wolfe AD, Armbruster WS, Thomson JD. Constrained lability in floral evolution: counting convergent origins of hummingbird pollination in Penstemon and Keckiella. The New Phytologist. 176: 883-90. PMID 17897322 DOI: 10.1111/J.1469-8137.2007.02219.X  0.365
2007 Davies SG, Russell AJ, Sheppard RL, Smith AD, Thomson JE. Evaluating beta-amino acids as enantioselective organocatalysts of the Hajos-Parrish-Eder-Sauer-Wiechert reaction. Organic & Biomolecular Chemistry. 5: 3190-200. PMID 17878978 DOI: 10.1039/B711171A  0.345
2007 Chen D, Wang P, Lewis RL, Daigh CA, Ho C, Chen X, Thomson JA, Kendziorski C. A microarray analysis of the emergence of embryonic definitive hematopoiesis. Experimental Hematology. 35: 1344-57. PMID 17761287 DOI: 10.1016/J.Exphem.2007.06.004  0.471
2007 Otterstatter MC, Thomson JD. Contact networks and transmission of an intestinal pathogen in bumble bee (Bombus impatiens) colonies. Oecologia. 154: 411-21. PMID 17713789 DOI: 10.1007/s00442-007-0834-8  0.342
2007 Beddow JE, Davies SG, Ling KB, Roberts PM, Russell AJ, Smith AD, Thomson JE. Asymmetric synthesis of beta2-amino acids: 2-substituted-3-aminopropanoic acids from N-acryloyl SuperQuat derivatives. Organic & Biomolecular Chemistry. 5: 2812-25. PMID 17700850 DOI: 10.1039/B707689D  0.374
2007 Davies SG, Garner AC, Ouzman JV, Roberts PM, Smith AD, Snow EJ, Thomson JE, Tamayo JA, Vickers RJ. Diastereoselective synthesis of quaternary alpha-amino acids from diketopiperazine templates. Organic & Biomolecular Chemistry. 5: 2138-47. PMID 17581658 DOI: 10.1039/B704475E  0.364
2007 Hirst M, Delaney A, Rogers SA, Schnerch A, Persaud DR, O'Connor MD, Zeng T, Moksa M, Fichter K, Mah D, Go A, Morin RD, Baross A, Zhao Y, Khattra J, ... ... Thomson JA, et al. LongSAGE profiling of nine human embryonic stem cell lines. Genome Biology. 8: R113. PMID 17570852 DOI: 10.1186/Gb-2007-8-6-R113  0.487
2007 Davies SG, Garner AC, Goddard EC, Kruchinin D, Roberts PM, Smith AD, Rodriguez-Solla H, Thomson JE, Toms SM. Asymmetric synthesis of 3,4-anti- and 3,4-syn-substituted aminopyrrolidines via lithium amide conjugate addition. Organic & Biomolecular Chemistry. 5: 1961-9. PMID 17551646 DOI: 10.1039/B704932C  0.386
2007 Thomson JR, Mac Nally R, Fleishman E, Horrocks G. Predicting bird species distributions in reconstructed landscapes. Conservation Biology : the Journal of the Society For Conservation Biology. 21: 752-66. PMID 17531053 DOI: 10.1111/j.1523-1739.2007.00687.x  0.329
2007 Gegear RJ, Manson JS, Thomson JD. Ecological context influences pollinator deterrence by alkaloids in floral nectar. Ecology Letters. 10: 375-82. PMID 17498136 DOI: 10.1111/j.1461-0248.2007.01027.x  0.375
2007 Derda R, Li L, Orner BP, Lewis RL, Thomson JA, Kiessling LL. Defined substrates for human embryonic stem cell growth identified from surface arrays. Acs Chemical Biology. 2: 347-55. PMID 17480050 DOI: 10.1021/Cb700032U  0.433
2007 Rajesh D, Chinnasamy N, Mitalipov SM, Wolf DP, Slukvin I, Thomson JA, Shaaban AF. Differential requirements for hematopoietic commitment between human and rhesus embryonic stem cells. Stem Cells (Dayton, Ohio). 25: 490-9. PMID 17284653 DOI: 10.1634/Stemcells.2006-0277  0.468
2007 Pan G, Thomson JA. Nanog and transcriptional networks in embryonic stem cell pluripotency. Cell Research. 17: 42-9. PMID 17211451 DOI: 10.1038/Sj.Cr.7310125  0.476
2007 Manson JS, Lachance MA, Thomson JD. Candida gelsemii sp. nov., a yeast of the Metschnikowiaceae clade isolated from nectar of the poisonous Carolina jessamine. Antonie Van Leeuwenhoek. 92: 37-42. PMID 17205379 DOI: 10.1007/S10482-006-9132-4  0.353
2006 Thomson JD. Tactics for male reproductive success in plants: contrasting insights of sex allocation theory and pollen presentation theory. Integrative and Comparative Biology. 46: 390-7. PMID 21672751 DOI: 10.1093/icb/icj046  0.366
2006 Chang HY, Thomson JA, Chen X. Microarray analysis of stem cells and differentiation. Methods in Enzymology. 420: 225-54. PMID 17161699 DOI: 10.1016/S0076-6879(06)20010-7  0.47
2006 Thomson JG, Ow DW. Site-specific recombination systems for the genetic manipulation of eukaryotic genomes. Genesis (New York, N.Y. : 2000). 44: 465-76. PMID 16981199 DOI: 10.1002/dvg.20237  0.377
2006 Kameda T, Smuga-Otto K, Thomson JA. A severe de novo methylation of episomal vectors by human ES cells. Biochemical and Biophysical Research Communications. 349: 1269-77. PMID 16973130 DOI: 10.1016/J.Bbrc.2006.08.175  0.481
2006 Ludwig TE, Bergendahl V, Levenstein ME, Yu J, Probasco MD, Thomson JA. Feeder-independent culture of human embryonic stem cells. Nature Methods. 3: 637-46. PMID 16862139 DOI: 10.1038/Nmeth902  0.47
2006 Bull SD, Davies SG, Garner AC, Kruchinin D, Key MS, Roberts PM, Savory ED, Smith AD, Thomson JE. SuperQuat 5,5-dimethyl-4-iso-propyloxazolidin-2-one as a mimic of Evans 4-tert-butyloxazolidin-2-one. Organic & Biomolecular Chemistry. 4: 2945-64. PMID 16855744 DOI: 10.1039/B605244D  0.363
2006 Davies SG, Garner AC, Roberts PM, Smith AD, Sweet MJ, Thomson JE. Oxazinanones as chiral auxiliaries: synthesis and evaluation in enolate alkylations and aldol reactions. Organic & Biomolecular Chemistry. 4: 2753-68. PMID 16826300 DOI: 10.1039/B604073J  0.385
2006 Vodyanik MA, Thomson JA, Slukvin II. Leukosialin (CD43) defines hematopoietic progenitors in human embryonic stem cell differentiation cultures. Blood. 108: 2095-105. PMID 16757688 DOI: 10.1182/Blood-2006-02-003327  0.395
2006 Castellanos MC, Wilson P, Keller SJ, Wolfe AD, Thomson JD. Anther evolution: pollen presentation strategies when pollinators differ. The American Naturalist. 167: 288-96. PMID 16670987 DOI: 10.1086/498854  0.355
2006 Gegear RJ, Otterstatter MC, Thomson JD. Bumble-bee foragers infected by a gut parasite have an impaired ability to utilize floral information. Proceedings. Biological Sciences. 273: 1073-8. PMID 16600883 DOI: 10.1098/rspb.2005.3423  0.34
2006 Slukvin II, Vodyanik MA, Thomson JA, Gumenyuk ME, Choi KD. Directed differentiation of human embryonic stem cells into functional dendritic cells through the myeloid pathway. Journal of Immunology (Baltimore, Md. : 1950). 176: 2924-32. PMID 16493050 DOI: 10.4049/Jimmunol.176.5.2924  0.438
2006 Ludwig TE, Levenstein ME, Jones JM, Berggren WT, Mitchen ER, Frane JL, Crandall LJ, Daigh CA, Conard KR, Piekarczyk MS, Llanas RA, Thomson JA. Derivation of human embryonic stem cells in defined conditions. Nature Biotechnology. 24: 185-7. PMID 16388305 DOI: 10.1038/Nbt1177  0.474
2006 Levenstein ME, Ludwig TE, Xu RH, Llanas RA, VanDenHeuvel-Kramer K, Manning D, Thomson JA. Basic fibroblast growth factor support of human embryonic stem cell self-renewal. Stem Cells (Dayton, Ohio). 24: 568-74. PMID 16282444 DOI: 10.1634/Stemcells.2005-0247  0.461
2006 Narayan AD, Chase JL, Lewis RL, Tian X, Kaufman DS, Thomson JA, Zanjani ED. Human embryonic stem cell-derived hematopoietic cells are capable of engrafting primary as well as secondary fetal sheep recipients. Blood. 107: 2180-3. PMID 16278307 DOI: 10.1182/Blood-2005-05-1922  0.464
2006 Yu J, Vodyanik MA, He P, Slukvin II, Thomson JA. Human embryonic stem cells reprogram myeloid precursors following cell-cell fusion. Stem Cells (Dayton, Ohio). 24: 168-76. PMID 16210403 DOI: 10.1634/Stemcells.2005-0292  0.497
2006 Shaaban A, Gaur L, Thomson JA, Rajesh D. FGF-2 Supplementation Enhances Hematopoietic Differentiation of Rhesus ESC’s. Blood. 108: 1667-1667. DOI: 10.1182/Blood.V108.11.1667.1667  0.465
2006 Chen D, Lewis RL, Daigh CA, Thomson JA. Charaterization of Human Primitive Megakaryocytes and “Platelets”. Blood. 108: 1520-1520. DOI: 10.1182/Blood.V108.11.1520.1520  0.422
2006 Ludwig TE, Bergendahl V, Levenstein ME, Yu J, Probasco MD, Thomson JA. Erratum: Feeder-independent culture of human embryonic stem cells Nature Methods. 3: 867-867. DOI: 10.1038/Nmeth1006-867  0.429
2005 Thomson JA, Tolmie AK, Foot HC, Whelan KM, Sarvary P, Morrison S. Influence of virtual reality training on the roadside crossing judgments of child pedestrians. Journal of Experimental Psychology. Applied. 11: 175-86. PMID 16221036 DOI: 10.1037/1076-898X.11.3.175  0.328
2005 Kameda T, Thomson JA. Human ERas gene has an upstream premature polyadenylation signal that results in a truncated, noncoding transcript. Stem Cells. 23: 1535-1540. PMID 16081664 DOI: 10.1634/Stemcells.2005-0054  0.466
2005 Davies SG, Sheppard RL, Smith AD, Thomson JE. Highly enantioselective organocatalysis of the Hajos-Parrish-Eder-Sauer-Wiechert reaction by the beta-amino acid cispentacin. Chemical Communications (Cambridge, England). 3802-4. PMID 16041422 DOI: 10.1039/B506780B  0.345
2005 Tolmie A, Thomson JA, Foot HC, Whelan K, Morrison S, McLaren B. The effects of adult guidance and peer discussion on the development of children's representations: evidence from the training of pedestrian skills. British Journal of Psychology (London, England : 1953). 96: 181-204. PMID 15969830 DOI: 10.1348/000712604X15545  0.33
2005 Yan Y, Yang D, Zarnowska ED, Du Z, Werbel B, Valliere C, Pearce RA, Thomson JA, Zhang SC. Directed differentiation of dopaminergic neuronal subtypes from human embryonic stem cells. Stem Cells (Dayton, Ohio). 23: 781-90. PMID 15917474 DOI: 10.1634/Stemcells.2004-0365  0.413
2005 Xu RH, Peck RM, Li DS, Feng X, Ludwig T, Thomson JA. Basic FGF and suppression of BMP signaling sustain undifferentiated proliferation of human ES cells. Nature Methods. 2: 185-90. PMID 15782187 DOI: 10.1038/Nmeth744  0.463
2005 Zwaka TP, Thomson JA. Differentiation of human embryonic stem cells occurs through symmetric cell division. Stem Cells. 23: 146-149. PMID 15671139 DOI: 10.1634/Stemcells.2004-0248  0.487
2005 Zwaka TP, Thomson JA. A germ cell origin of embryonic stem cells Development. 132: 227-233. PMID 15623802 DOI: 10.1242/Dev.01586  0.473
2005 Vodyanik MA, Bork JA, Thomson JA, Slukvin II. Human embryonic stem cell-derived CD34+ cells: efficient production in the coculture with OP9 stromal cells and analysis of lymphohematopoietic potential. Blood. 105: 617-26. PMID 15374881 DOI: 10.1182/Blood-2004-04-1649  0.456
2005 Chen D, Lewis RL, Daigh CA, Wang P, Kendzioski CM, Chen X, Brown PO, Thomson JA. The Temporal Gene Expression Patterns of Embryonic Hematopoiesis after Hemangioblast Commitment. Blood. 106: 4188-4188. DOI: 10.1182/Blood.V106.11.4188.4188  0.456
2005 Shaaban AF, Golos TG, Thomson JA, Rajesh D. Differential Patterns of Transcriptional Protein Expression May Explain Functional Differences between Hematopoietic Progenitors Derived from Human ESC’s and Fetal Hematopoietic Tissues. Blood. 106: 3615-3615. DOI: 10.1182/Blood.V106.11.3615.3615  0.467
2004 Kissinger CR, Rejto PA, Pelletier LA, Thomson JA, Showalter RE, Abreo MA, Agree CS, Margosiak S, Meng JJ, Aust RM, Vanderpool D, Li B, Tempczyk-Russell A, Villafranca JE. Crystal structure of human ABAD/HSD10 with a bound inhibitor: Implications for design of Alzheimer's disease therapeutics Journal of Molecular Biology. 342: 943-952. PMID 15342248 DOI: 10.1016/j.jmb.2004.07.071  0.353
2004 Orner BP, Derda R, Lewis RL, Thomson JA, Kiessling LL. Arrays for the combinatorial exploration of cell adhesion. Journal of the American Chemical Society. 126: 10808-9. PMID 15339142 DOI: 10.1021/Ja0474291  0.435
2004 Thomson J, Parkinson A, Roddick FA. Depolymerization of chromophoric natural organic matter. Environmental Science & Technology. 38: 3360-9. PMID 15260336 DOI: 10.1021/es049604j  0.362
2004 Castellanos MC, Wilson P, Thomson JD. Pollen transfer by hummingbirds and bumblebees, and the divergence of pollination modes in Penstemon. Evolution; International Journal of Organic Evolution. 57: 2742-52. PMID 14761053 DOI: 10.1111/j.0014-3820.2003.tb01516.x  0.358
2004 Gerami-Naini B, Dovzhenko OV, Durning M, Wegner FH, Thomson JA, Golos TG. Trophoblast differentiation in embryoid bodies derived from human embryonic stem cells. Endocrinology. 145: 1517-24. PMID 14684604 DOI: 10.1210/En.2003-1241  0.457
2004 Draper JS, Smith K, Gokhale P, Moore HD, Maltby E, Johnson J, Meisner L, Zwaka TP, Thomson JA, Andrews PW. Recurrent gain of chromosomes 17q and 12 in cultured human embryonic stem cells Nature Biotechnology. 22: 53-54. PMID 14661028 DOI: 10.1038/Nbt922  0.429
2004 Thomson J. When is it mutualism? The American Naturalist. 162: S1-9. PMID 14583853 DOI: 10.1086/378683  0.326
2004 Kaufman DS, Lewis RL, Hanson ET, Auerbach R, Plendl J, Thomson JA. Functional endothelial cells derived from rhesus monkey embryonic stem cells. Blood. 103: 1325-32. PMID 14563647 DOI: 10.1182/Blood-2003-03-0799  0.431
2004 Vodyanik MA, Thomson JA, Slukvin II. CD43 Defines Early Hematopoietic Progenitors Derived from Human Embryonic Stem Cells (hESC). Blood. 104: 3216-3216. DOI: 10.1182/Blood.V104.11.3216.3216  0.391
2004 Slukvin II, Vodyanik MA, Bork JA, Thomson JA. Development of Lymphohematopoietic Progenitors during Human Embryonic Stem (hES) Cell Differentiation on OP9 Stromal Cells. Blood. 104: 2789-2789. DOI: 10.1182/Blood.V104.11.2789.2789  0.45
2003 Sperger JM, Chen X, Draper JS, Antosiewicz JE, Chon CH, Jones SB, Brooks JD, Andrews PW, Brown PO, Thomson JA. Gene expression patterns in human embryonic stem cells and human pluripotent germ cell tumors. Proceedings of the National Academy of Sciences of the United States of America. 100: 13350-5. PMID 14595015 DOI: 10.1073/Pnas.2235735100  0.469
2003 Thomson JG, Rucker EB, Piedrahita JA. Mutational analysis of LoxP sites for efficient cre-mediated insertion into genomic DNA Genesis. 36: 162-167. PMID 12872248 DOI: 10.1002/Gene.10211  0.364
2003 Love RA, Parge HE, Yu X, Hickey MJ, Diehl W, Gao J, Wriggers H, Ekker A, Wang L, Thomson JA, Dragovich PS, Fuhrman SA. Crystallographic identification of a noncompetitive inhibitor binding site on the hepatitis C virus NS5B RNA polymerase enzyme. Journal of Virology. 77: 7575-81. PMID 12805457  0.339
2003 He JQ, Ma Y, Lee Y, Thomson JA, Kamp TJ. Human embryonic stem cells develop into multiple types of cardiac myocytes: action potential characterization. Circulation Research. 93: 32-9. PMID 12791707 DOI: 10.1161/01.Res.0000080317.92718.99  0.449
2003 Zwaka TP, Thomson JA. Homologous recombination in human embryonic stem cells. Nature Biotechnology. 21: 319-21. PMID 12577066 DOI: 10.1038/nbt788  0.497
2003 Ma Y, Ramezani A, Lewis R, Hawley RG, Thomson JA. High-level sustained transgene expression in human embryonic stem cells using lentiviral vectors. Stem Cells (Dayton, Ohio). 21: 111-7. PMID 12529558 DOI: 10.1634/Stemcells.21-1-111  0.481
2002 Xu RH, Chen X, Li DS, Li R, Addicks GC, Glennon C, Zwaka TP, Thomson JA. BMP4 initiates human embryonic stem cell differentiation to trophoblast. Nature Biotechnology. 20: 1261-4. PMID 12426580 DOI: 10.1038/Nbt761  0.492
2002 Henderson JK, Draper JS, Baillie HS, Fishel S, Thomson JA, Moore H, Andrews PW. Preimplantation Human Embryos and Embryonic Stem Cells Show Comparable Expression of Stage‐Specific Embryonic Antigens Stem Cells. 20: 329-337. PMID 12110702 DOI: 10.1634/Stemcells.20-4-329  0.486
2002 Cooper S, Bennett W, Andrade J, Reubinoff BE, Thomson J, Pera MF. Biochemical properties of a keratan sulphate/chondroitin sulphate proteoglycan expressed in primate pluripotent stem cells. Journal of Anatomy. 200: 259-65. PMID 12033730 DOI: 10.1046/J.1469-7580.2002.00034.X  0.47
2002 Draper JS, Pigott C, Thomson JA, Andrews PW. Surface antigens of human embryonic stem cells: changes upon differentiation in culture. Journal of Anatomy. 200: 249-258. PMID 12033729 DOI: 10.1046/J.1469-7580.2002.00030.X  0.483
2002 Kaufman DS, Thomson JA. Human ES cells--haematopoiesis and transplantation strategies. Journal of Anatomy. 200: 243-248. PMID 12033728 DOI: 10.1046/J.1469-7580.2002.00028.X  0.494
2002 Wolfgang MJ, Marshall VS, Eisele SG, Schotzko ML, Thomson JA, Golos TG. Efficient method for expressing transgenes in nonhuman primate embryos using a stable episomal vector. Molecular Reproduction and Development. 62: 69-73. PMID 11933162 DOI: 10.1002/Mrd.10059  0.412
2002 Ma Y, Huffaker S, He J, Causey J, Lee Y, Kamp T, Thomson J. 03 Functional cardiomyocytes from four human embryonic stem cell lines Journal of Molecular and Cellular Cardiology. 34: A31. DOI: 10.1016/S0022-2828(02)90179-3  0.464
2001 Zhang SC, Wernig M, Duncan ID, Brüstle O, Thomson JA. In vitro differentiation of transplantable neural precursors from human embryonic stem cells. Nature Biotechnology. 19: 1129-33. PMID 11731781 DOI: 10.1038/Nbt1201-1129  0.458
2001 Kaufman DS, Hanson ET, Lewis RL, Auerbach R, Thomson JA. Hematopoietic colony-forming cells derived from human embryonic stem cells. Proceedings of the National Academy of Sciences of the United States of America. 98: 10716-21. PMID 11535826 DOI: 10.1073/Pnas.191362598  0.487
2001 Li F, Lu S, Vida L, Thomson JA, Honig GR. Bone morphogenetic protein 4 induces efficient hematopoietic differentiation of rhesus monkey embryonic stem cells in vitro. Blood. 98: 335-42. PMID 11435301 DOI: 10.1182/Blood.V98.2.335  0.482
2001 Masters JR, Thomson JA, Daly-Burns B, Reid YA, Dirks WG, Packer P, Toji LH, Ohno T, Tanabe H, Arlett CF, Kelland LR, Harrison M, Virmani A, Ward TH, Ayres KL, et al. Short tandem repeat profiling provides an international reference standard for human cell lines. Proceedings of the National Academy of Sciences of the United States of America. 98: 8012-7. PMID 11416159 DOI: 10.1073/Pnas.121616198  0.413
2001 Odorico JS, Kaufman DS, Thomson JA. Multilineage differentiation from human embryonic stem cell lines. Stem Cells (Dayton, Ohio). 19: 193-204. PMID 11359944 DOI: 10.1634/Stemcells.19-3-193  0.505
2001 Marshall VS, Waknitz MA, Thomson JA. Isolation and maintenance of primate embryonic stem cells. Methods of Molecular Biology. 158: 11-18. PMID 11236652 DOI: 10.1385/1-59259-220-1:11  0.459
2001 Andrews PW, Przyborski SA, Thomson JA. 11 Embryonal Carcinoma Cells as Embryonic Stem Cells Cold Spring Harbor Monograph Archive. 40: 231-265. DOI: 10.1101/087969673.40.231  0.438
2000 Jones JM, Thomson JA. Human embryonic stem cell technology. Seminars in Reproductive Medicine. 18: 219-224. PMID 11256171 DOI: 10.1055/S-2000-12560  0.488
2000 Amit M, Carpenter MK, Inokuma MS, Chiu CP, Harris CP, Waknitz MA, Itskovitz-Eldor J, Thomson JA. Clonally derived human embryonic stem cell lines maintain pluripotency and proliferative potential for prolonged periods of culture Developmental Biology. 227: 271-278. PMID 11071754 DOI: 10.1006/Dbio.2000.9912  0.454
2000 Thomson JA, Odorico JS. Human embryonic stem cell and embryonic germ cell lines. Trends in Biotechnology. 18: 53-7. PMID 10652509 DOI: 10.1016/S0167-7799(99)01410-9  0.492
2000 Odorico JS, Jacobson LM, Lumelsky N, Hullett DA, Thomson JA, Kahan BW. PANCREATIC GENE EXPRESSION IN DIFFERENTIATING EMBRYONIC STEM CELLS. Transplantation. 69: S296. DOI: 10.1097/00007890-200004271-00707  0.46
2000 Kaufman DS, Odorico JS, Thomson JA. Transplantation Therapies from Human Embryonic Stem Cells—Circumventing Immune Rejection E-Biomed: the Journal of Regenerative Medicine. 1: 11-15. DOI: 10.1089/152489000414525  0.487
1998 Thomson JA, Itskovitz-Eldor J, Shapiro SS, Waknitz MA, Swiergiel JJ, Marshall VS, Jones JM. Embryonic Stem Cell Lines Derived from Human Blastocysts Science. 282: 1145-1147. PMID 9804556 DOI: 10.1126/Science.282.5391.1145  0.484
1998 Thomson JA, Marshall VS, Trojanowski JQ. Neural differentiation of rhesus embryonic stem cells. Apmis : Acta Pathologica, Microbiologica, Et Immunologica Scandinavica. 106: 149-56; discussion 1. PMID 9524573 DOI: 10.1111/J.1699-0463.1998.Tb01330.X  0.464
1996 Thomson JB, Patel BK, Jiménez V, Eckart K, Eckstein F. Synthesis and Properties of Diuridine Phosphate Analogues Containing Thio and Amino Modifications. The Journal of Organic Chemistry. 61: 6273-6281. PMID 11667467 DOI: 10.1021/Jo960795L  0.346
1995 Thomson JA, Kalishman J, Golos TG, Durning M, Harris CP, Becker RA, Hearn JP. Isolation of a primate embryonic stem cell line. Proceedings of the National Academy of Sciences of the United States of America. 92: 7844-8. PMID 7544005 DOI: 10.1073/Pnas.92.17.7844  0.481
1993 Rigney LP, Thomson JD, Cruzan MB, Brunet J. DIFFERENTIAL SUCCESS OF POLLEN DONORS IN A SELF-COMPATIBLE LILY. Evolution; International Journal of Organic Evolution. 47: 915-924. PMID 28567910 DOI: 10.1111/J.1558-5646.1993.Tb01244.X  0.371
1992 Thomson JA, Iliff‐Sizemore SA, Gliessman PM, Wolf DP. Collection and fertilization potential of sperm from the Sulawesi crested black macaque (Macaca nigra). American Journal of Primatology. 28: 289-297. PMID 31941206 DOI: 10.1002/Ajp.1350280407  0.349
1990 Wolf DP, Thomson JA, Zelinski‐Wooten MB, Stouffer RL. In vitro fertilization-embryo transfer in nonhuman primates: the technique and its applications. Molecular Reproduction and Development. 27: 261-280. PMID 2078341 DOI: 10.1002/Mrd.1080270313  0.355
1989 Thomson JA, Solter D. The developmental fate of androgenetic, parthenogenetic, and gynogenetic cells in chimeric gastrulating mouse embryos. Genes & Development. 2: 1344-51. PMID 3203909 DOI: 10.1101/GAD.2.10.1344  0.432
1989 Thomson JA, Solter D. Chimeras between parthenogenetic or androgenetic blastomeres and normal embryos: Allocation to the inner cell mass and trophectoderm Developmental Biology. 131: 580-583. PMID 2912810 DOI: 10.1016/S0012-1606(89)80028-4  0.429
1988 Thomson JA, Solter D. Transgenic markers for mammalian chimeras. Roux's Archives of Developmental Biology : the Official Organ of the Edbo. 197: 63-65. PMID 28305597 DOI: 10.1007/BF00375928  0.375
1986 Thomson JD, Price MV, Waser NM, Stratton DA. Comparative studies of pollen and fluorescent dye transport by bumble bees visiting Erythronium grandiflorum. Oecologia. 69: 561-566. PMID 28311616 DOI: 10.1007/Bf00410363  0.366
1985 Harder LD, Thomson JD, Cruzan MB, Unnasch RS. Sexual reproduction and variation in floral morphology in an ephemeral vernal lily, Eyythronium americanum. Oecologia. 67: 286-291. PMID 28311326 DOI: 10.1007/Bf00384301  0.371
1983 Lillard HS, Thomson JE. Comparison of Sampling Methods for Escherichia coli and Total Aerobic Counts on Broiler Carcasses. Journal of Food Protection. 46: 781-782. PMID 30921955 DOI: 10.4315/0362-028X-46.9.781  0.321
1983 Townsend WE, Blankenship LC, Wilson RL, Thomson JE. Effect of Air Movement During Fermentation on Certain Properties of Natural Flora and Starter Culture-Fermented Sausage. Journal of Food Protection. 46: 982-986. PMID 30921856 DOI: 10.4315/0362-028X-46.11.982  0.348
1982 Thomson JD, Maddison WP, Plowright RC. Behavior of bumble bee pollinators of Aralia hispida Vent. (Araliaceae). Oecologia. 54: 326-336. PMID 28309956 DOI: 10.1007/Bf00380001  0.37
1981 Thomson JD, Barrett SCH. TEMPORAL VARIATION OF GENDER IN ARALIA HISPIDA VENT. (ARALIACEAE). Evolution; International Journal of Organic Evolution. 35: 1094-1107. PMID 28563399 DOI: 10.1111/J.1558-5646.1981.Tb04979.X  0.326
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