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Lionel Guy, Ph.D. - Publications

Affiliations: 
2003-2007 Fundamental Microbiology University of Lausanne, Lausanne, Vaud, Switzerland 
 2008-2015 Cell and Molecular Biology Uppsala University, Uppsala, Uppsala län, Sweden 
 2015- Medical Biochemistry and Microbiology Uppsala University, Uppsala, Uppsala län, Sweden 
Area:
Evolution of host-adapted bacteria
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41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Hägglund E, Andersson SGE, Guy L. TADA: taxonomy-aware dataset aggregator. Bioinformatics (Oxford, England). 39. PMID 38060257 DOI: 10.1093/bioinformatics/btad742  0.362
2023 Floriano AM, Batisti Biffignandi G, Castelli M, Olivieri E, Clementi E, Comandatore F, Rinaldi L, Opara M, Plantard O, Palomar AM, Noël V, Vijay A, Lo N, Makepeace BL, Duron O, ... ... Guy L, et al. The evolution of intramitochondriality in Midichloria bacteria. Environmental Microbiology. PMID 37305924 DOI: 10.1111/1462-2920.16446  0.373
2023 Leenheer D, Moreno AB, Paranjape K, Murray S, Jarraud S, Ginevra C, Guy L. Rapid adaptations of to the human host. Microbial Genomics. 9. PMID 36947445 DOI: 10.1099/mgen.0.000958  0.638
2022 Martijn J, Vosseberg J, Guy L, Offre P, Ettema TJG. Phylogenetic affiliation of mitochondria with Alpha-II and Rickettsiales is an artefact. Nature Ecology & Evolution. PMID 36280780 DOI: 10.1038/s41559-022-01871-3  0.505
2022 Hugoson E, Guliaev A, Ammunét T, Guy L. Host Adaptation in Legionellales Is 1.9 Ga, Coincident with Eukaryogenesis. Molecular Biology and Evolution. 39. PMID 35167692 DOI: 10.1093/molbev/msac037  0.813
2021 Karlsson PA, Tano E, Jernberg C, Hickman RA, Guy L, Järhult JD, Wang H. Molecular Characterization of Multidrug-Resistant From Foodborne Outbreaks in Sweden. Frontiers in Microbiology. 12: 664665. PMID 34054769 DOI: 10.3389/fmicb.2021.664665  0.337
2021 Karlsson PA, Tano E, Jernberg C, Hickman RA, Guy L, Järhult JD, Wang H. Molecular Characterization of Multidrug-Resistant Yersinia enterocolitica From Foodborne Outbreaks in Sweden Frontiers in Microbiology. 12. DOI: 10.3389/fmicb.2021.664665  0.338
2020 Wang H, Jensen JK, Olsson A, Vorimore F, Aaziz R, Guy L, Ellström P, Laroucau K, Herrmann B. Chlamydia psittaci in fulmars on the Faroe Islands: A causative link to South American psittacines eight decades after a severe epidemic. Microbes and Infection. PMID 32135200 DOI: 10.1016/J.Micinf.2020.02.007  0.334
2019 Mahajan M, Yee B, Hägglund E, Guy L, Fuerst J, Andersson SGE. Paralogization and New Protein Architectures in Planctomycetes Bacteria with Complex Cell Structures. Molecular Biology and Evolution. PMID 31808939 DOI: 10.1093/Molbev/Msz287  0.443
2019 Hugoson E, Lam WT, Guy L. miComplete: weighted quality evaluation of assembled microbial genomes. Bioinformatics (Oxford, England). PMID 31504158 DOI: 10.1093/Bioinformatics/Btz664  0.48
2018 Graells T, Ishak H, Larsson M, Guy L. The all-intracellular order Legionellales is unexpectedly diverse, globally distributed and lowly abundant. Fems Microbiology Ecology. 94. PMID 30973601 DOI: 10.1093/Femsec/Fiy185  0.799
2018 Graells T, Ishak H, Larsson M, Guy L. The all-intracellular order Legionellales is unexpectedly diverse, globally distributed and lowly abundant. Fems Microbiology Ecology. PMID 30203072 DOI: 10.1093/Femsle/Fiy185  0.799
2018 Lind AE, Lewis WH, Spang A, Guy L, Embley TM, Ettema TJG. Genomes of two archaeal endosymbionts show convergent adaptations to an intracellular lifestyle. The Isme Journal. PMID 29991760 DOI: 10.1038/S41396-018-0207-9  0.748
2018 Graells T, Hernández-García M, Pérez-Jové J, Guy L, Padilla E. Legionella pneumophila recurrently isolated in a Spanish hospital: Two years of antimicrobial resistance surveillance. Environmental Research. 166: 638-646. PMID 29982152 DOI: 10.1016/J.Envres.2018.06.045  0.747
2018 Martijn J, Vosseberg J, Guy L, Offre P, Ettema TJG. Deep mitochondrial origin outside the sampled alphaproteobacteria. Nature. 557: 101-105. PMID 29695865 DOI: 10.1038/S41586-018-0059-5  0.648
2018 Spang A, Eme L, Saw JH, Caceres EF, Zaremba-Niedzwiedzka K, Lombard J, Guy L, Ettema TJG. Asgard archaea are the closest prokaryotic relatives of eukaryotes. Plos Genetics. 14: e1007080. PMID 29596421 DOI: 10.1371/Journal.Pgen.1007080  0.65
2017 Tamarit D, Neuvonen MM, Engel P, Guy L, Andersson SGE. Origin and Evolution of the Bartonella Gene Transfer Agent. Molecular Biology and Evolution. PMID 29161442 DOI: 10.1093/Molbev/Msx299  0.812
2017 Kacar B, Guy L, Smith E, Baross J. Resurrecting ancestral genes in bacteria to interpret ancient biosignatures. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 375. PMID 29133450 DOI: 10.1098/Rsta.2016.0352  0.374
2017 Guy L. phyloSkeleton: taxon selection, data retrieval and marker identification for phylogenomics. Bioinformatics (Oxford, England). 33: 1230-1232. PMID 28057682 DOI: 10.1093/Bioinformatics/Btw824  0.419
2016 Neuvonen MM, Tamarit D, Näslund K, Liebig J, Feldhaar H, Moran NA, Guy L, Andersson SG. The genome of Rhizobiales bacteria in predatory ants reveals urease gene functions but no genes for nitrogen fixation. Scientific Reports. 6: 39197. PMID 27976703 DOI: 10.1038/Srep39197  0.82
2016 Kämpfer P, Glaeser SP, Marinotti O, Guy L, Håkansson S, Tadei WP, Busse HJ, Terenius O. Coetzeea brasiliensis gen. nov., sp. nov. isolated from larvae of Anopheles darlingi. International Journal of Systematic and Evolutionary Microbiology. 66: 5211-5217. PMID 27624755 DOI: 10.1099/Ijsem.0.001497  0.33
2015 Saw JH, Spang A, Zaremba-Niedzwiedzka K, Juzokaite L, Dodsworth JA, Murugapiran SK, Colman DR, Takacs-Vesbach C, Hedlund BP, Guy L, Ettema TJ. Exploring microbial dark matter to resolve the deep archaeal ancestry of eukaryotes. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 370: 20140328. PMID 26323759 DOI: 10.1098/Rstb.2014.0328  0.703
2015 Spang A, Saw JH, Jørgensen SL, Zaremba-Niedzwiedzka K, Martijn J, Lind AE, van Eijk R, Schleper C, Guy L, Ettema TJ. Complex archaea that bridge the gap between prokaryotes and eukaryotes. Nature. 521: 173-9. PMID 25945739 DOI: 10.1038/Nature14447  0.716
2015 Martijn J, Schulz F, Zaremba-Niedzwiedzka K, Viklund J, Stepanauskas R, Andersson SG, Horn M, Guy L, Ettema TJ. Single-cell genomics of a rare environmental alphaproteobacterium provides unique insights into Rickettsiaceae evolution. The Isme Journal. PMID 25848874 DOI: 10.1038/Ismej.2015.46  0.803
2014 Guy L, Saw JH, Ettema TJ. The archaeal legacy of eukaryotes: a phylogenomic perspective. Cold Spring Harbor Perspectives in Biology. 6: a016022. PMID 24993577 DOI: 10.1101/Cshperspect.A016022  0.707
2014 Guy L, Spang A, Saw JH, Ettema TJ. 'Geoarchaeote NAG1' is a deeply rooting lineage of the archaeal order Thermoproteales rather than a new phylum. The Isme Journal. 8: 1353-7. PMID 24522265 DOI: 10.1038/Ismej.2014.6  0.579
2013 Spang A, Martijn J, Saw JH, Lind AE, Guy L, Ettema TJ. Close encounters of the third domain: the emerging genomic view of archaeal diversity and evolution. Archaea (Vancouver, B.C.). 2013: 202358. PMID 24348093 DOI: 10.1155/2013/202358  0.67
2013 Guy L, Jernberg C, Arvén Norling J, Ivarsson S, Hedenström I, Melefors Ö, Liljedahl U, Engstrand L, Andersson SG. Adaptive mutations and replacements of virulence traits in the Escherichia coli O104:H4 outbreak population. Plos One. 8: e63027. PMID 23675451 DOI: 10.1371/Journal.Pone.0063027  0.655
2013 Guy L, Nystedt B, Toft C, Zaremba-Niedzwiedzka K, Berglund EC, Granberg F, Näslund K, Eriksson AS, Andersson SG. A gene transfer agent and a dynamic repertoire of secretion systems hold the keys to the explosive radiation of the emerging pathogen Bartonella. Plos Genetics. 9: e1003393. PMID 23555299 DOI: 10.1371/Journal.Pgen.1003393  0.719
2013 Sentchilo V, Mayer AP, Guy L, Miyazaki R, Green Tringe S, Barry K, Malfatti S, Goessmann A, Robinson-Rechavi M, van der Meer JR. Community-wide plasmid gene mobilization and selection. The Isme Journal. 7: 1173-86. PMID 23407308 DOI: 10.1038/Ismej.2013.13  0.429
2012 Guy L, Jernberg C, Ivarsson S, Hedenström I, Engstrand L, Andersson SG. Genomic diversity of the 2011 European outbreaks of Escherichia coli O104:H4. Proceedings of the National Academy of Sciences of the United States of America. 109: E3627-8. PMID 23248326 DOI: 10.1073/Pnas.1206246110  0.604
2012 Guy L, Nystedt B, Sun Y, Näslund K, Berglund EC, Andersson SG. A genome-wide study of recombination rate variation in Bartonella henselae. Bmc Evolutionary Biology. 12: 65. PMID 22577862 DOI: 10.1186/1471-2148-12-65  0.679
2011 Guy L, Ettema TJ. The archaeal 'TACK' superphylum and the origin of eukaryotes. Trends in Microbiology. 19: 580-7. PMID 22018741 DOI: 10.1016/J.Tim.2011.09.002  0.666
2010 Guy L, Kultima JR, Andersson SG. genoPlotR: comparative gene and genome visualization in R. Bioinformatics (Oxford, England). 26: 2334-5. PMID 20624783 DOI: 10.1093/Bioinformatics/Btq413  0.68
2009 Panchaud A, Guy L, Collyn F, Haenni M, Nakata M, Podbielski A, Moreillon P, Roten CA. M-protein and other intrinsic virulence factors of Streptococcus pyogenes are encoded on an ancient pathogenicity island. Bmc Genomics. 10: 198. PMID 19397826 DOI: 10.1186/1471-2164-10-198  0.796
2007 Collyn F, Roten CA, Guy L. Solving ambiguities in contig assembly of Idiomarina loihiensis L2TR chromosome by in silico analyses. Fems Microbiology Letters. 271: 187-92. PMID 17442016 DOI: 10.1111/J.1574-6968.2007.00714.X  0.791
2006 Guy L. Identification and characterization of pathogenicity and other genomic islands using base composition analyses. Future Microbiology. 1: 309-16. PMID 17661643 DOI: 10.2217/17460913.1.3.309  0.521
2006 Collyn F, Guy L, Marceau M, Simonet M, Roten CA. Describing ancient horizontal gene transfers at the nucleotide and gene levels by comparative pathogenicity island genometrics. Bioinformatics (Oxford, England). 22: 1072-9. PMID 16303795 DOI: 10.1093/Bioinformatics/Bti793  0.821
2005 Guy L, Karamata D, Moreillon P, Roten CA. Genometrics as an essential tool for the assembly of whole genome sequences: the example of the chromosome of Bifidobacterium longum NCC2705. Bmc Microbiology. 5: 60. PMID 16223444 DOI: 10.1186/1471-2180-5-60  0.781
2004 Greub G, Collyn F, Guy L, Roten CA. A genomic island present along the bacterial chromosome of the Parachlamydiaceae UWE25, an obligate amoebal endosymbiont, encodes a potentially functional F-like conjugative DNA transfer system. Bmc Microbiology. 4: 48. PMID 15615594 DOI: 10.1186/1471-2180-4-48  0.805
2004 Guy L, Roten CA. Genometric analyses of the organization of circular chromosomes: a universal pressure determines the direction of ribosomal RNA genes transcription relative to chromosome replication. Gene. 340: 45-52. PMID 15556293 DOI: 10.1016/J.Gene.2004.06.056  0.798
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