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Jianxin Wang - Publications

Affiliations: 
School of Computer Science and Engineering Central South University, China 
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103 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Cheng J, Liu J, Yue H, Bai H, Pan Y, Wang J. Prediction of Glioma Grade using Intratumoral and Peritumoral Radiomic Features from Multiparametric MRI Images. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 33104503 DOI: 10.1109/TCBB.2020.3033538  0.351
2020 Yan C, Duan G, Zhang Y, Wu FX, Pan Y, Wang J. Predicting drug-drug interactions based on integrated similarity and semi-supervised learning. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 32310779 DOI: 10.1109/Tcbb.2020.2988018  0.339
2019 Tang L, Li M, Wu FX, Pan Y, Wang J. MAC: Merging Assemblies by Using Adjacency Algebraic Model and Classification. Frontiers in Genetics. 10: 1396. PMID 32082361 DOI: 10.3389/Fgene.2019.01396  0.349
2019 Yan C, Duan G, Pan Y, Wu FX, Wang J. DDIGIP: predicting drug-drug interactions based on Gaussian interaction profile kernels. Bmc Bioinformatics. 20: 538. PMID 31874609 DOI: 10.1186/S12859-019-3093-X  0.33
2019 Li M, Tang L, Wu FX, Pan Y, Wang J. CSA: a web service for the complete process of ChIP-Seq analysis. Bmc Bioinformatics. 20: 515. PMID 31874601 DOI: 10.1186/S12859-019-3090-0  0.329
2019 Liao X, Li M, Luo J, Zou Y, Wu F, Pan Y, Luo F, Wang J. EPGA-SC : A framework for de novo assembly of single-cell sequencing reads. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 31603794 DOI: 10.1109/Tcbb.2019.2945761  0.355
2019 Gao J, Tian L, Lv T, Wang J, Song B, Hu X. Protein2Vec: Aligning Multiple PPI Networks with Representation Learning. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 31478867 DOI: 10.1109/TCBB.2019.2937771  0.324
2019 Zhang Z, Luo J, Shang J, Li M, Wu F, Pan Y, Wang J. Deletion detection method using the distribution of insert size and a precise alignment strategy. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 31403441 DOI: 10.1109/Tcbb.2019.2934407  0.377
2019 Li G, Li M, Peng W, Li Y, Pan Y, Wang J. A novel extended pareto optimality consensus model for predicting essential proteins. Journal of Theoretical Biology. PMID 31398315 DOI: 10.1016/J.Jtbi.2019.08.005  0.471
2019 Xu Y, Li H, Pan Y, Luo F, Wang J. A Gene Rank Based Approach for Single Cell Similarity Assessment and Clustering. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 31369384 DOI: 10.1109/Tcbb.2019.2931582  0.365
2019 Duan G, Yan C, Wu F, Pan Y, Wang J. MCHMDA: Predicting microbe-disease associations based on similarities and low-rank matrix completion. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 31295117 DOI: 10.1109/Tcbb.2019.2926716  0.41
2019 Luo H, Wang J, Yan C, Li M, Wu F, Pan Y. A Novel Drug Repositioning Approach based on Collaborative Metric Learning. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 31283509 DOI: 10.1109/Tcbb.2019.2926453  0.334
2019 Yan C, Duan G, Wu F, Pan Y, Wang J. BRWMDA:Predicting microbe-disease associations based on similarities and bi-random walk on disease and microbe networks. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 30932846 DOI: 10.1109/Tcbb.2019.2907626  0.412
2019 Zheng R, Li M, Liang Z, Wu FX, Pan Y, Wang J. SinNLRR: a robust subspace clustering method for cell type detection by nonnegative and low rank representation. Bioinformatics (Oxford, England). PMID 30821315 DOI: 10.1093/Bioinformatics/Btz139  0.339
2019 Zheng R, Li M, Chen X, Zhao S, Wu F, Pan Y, Wang J. An ensemble method to reconstruct gene regulatory networks based on multivariate adaptive regression splines. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 30794516 DOI: 10.1109/Tcbb.2019.2900614  0.401
2019 Zeng M, Li M, Fei Z, Wu F, Li Y, Pan Y, Wang J. A deep learning framework for identifying essential proteins by integrating multiple types of biological information. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 30736002 DOI: 10.1109/Tcbb.2019.2897679  0.432
2019 Liao X, Li M, Zou Y, Wu F, Pan Y, Wang J. An efficient trimming algorithm based on multi-feature fusion scoring model for NGS data. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 30736001 DOI: 10.1109/Tcbb.2019.2897558  0.374
2019 Xiao Q, Luo P, Li M, Wang J, Wu FX. A novel core-attachment based method to identify dynamic protein complexes based on gene expression profiles and PPI Networks. Proteomics. e1800129. PMID 30650262 DOI: 10.1002/pmic.201800129  0.321
2018 Li G, Li M, Wang J, Li Y, Pan Y. United neighborhood closeness centrality and orthology for predicting essential proteins. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 30596582 DOI: 10.1109/Tcbb.2018.2889978  0.478
2018 Liu L, Yu Y, Fei Z, Li M, Wu FX, Li HD, Pan Y, Wang J. An interpretable boosting model to predict side effects of analgesics for osteoarthritis. Bmc Systems Biology. 12: 105. PMID 30463545 DOI: 10.1186/S12918-018-0624-4  0.327
2018 Zheng R, Li M, Chen X, Wu FX, Pan Y, Wang J. BiXGBoost: a scalable, flexible boosting based method for reconstructing gene regulatory networks. Bioinformatics (Oxford, England). PMID 30395189 DOI: 10.1093/Bioinformatics/Bty908  0.386
2018 Gao J, Song B, Hu X, Yan F, Wang J. ConnectedAlign: a PPI network alignment method for identifying conserved protein complexes across multiple species. Bmc Bioinformatics. 19: 286. PMID 30367584 DOI: 10.1186/s12859-018-2271-6  0.327
2018 Wu B, Li M, Liao X, Luo J, Wu F, Pan Y, Wang J. MEC: Misassembly Error Correction in contigs based on distribution of paired-end reads and statistics of GC-contents. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 30334805 DOI: 10.1109/Tcbb.2018.2876855  0.38
2018 Jiang H, Wang J, Li M, Lan W, Wu F, Pan Y. miRTRS: A Recommendation Algorithm for Predicting miRNA Targets. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 30281478 DOI: 10.1109/Tcbb.2018.2873299  0.314
2018 Li M, Tang L, Wu FX, Pan Y, Wang J. SCOP: a novel scaffolding algorithm based on contig classification and optimization. Bioinformatics (Oxford, England). PMID 30184046 DOI: 10.1093/Bioinformatics/Bty773  0.359
2018 Liao X, Li M, Zou Y, Wu F, Pan Y, Luo F, Wang J. Improving de novo assembly based on read classification. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 30059317 DOI: 10.1109/Tcbb.2018.2861380  0.335
2018 Li M, Tang L, Liao Z, Luo J, Wu F, Pan Y, Wang J. A novel scaffolding algorithm based on contig error correction and path extension. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 30040649 DOI: 10.1109/Tcbb.2018.2858267  0.376
2018 Li M, Fei Z, Zeng M, Wu F, Li Y, Pan Y, Wang J. Automated ICD-9 Coding via A Deep Learning Approach. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 29994157 DOI: 10.1109/Tcbb.2018.2817488  0.366
2018 Luo H, Wang J, Li M, Luo J, Ni P, Zhao K, Wu F, Pan Y. Computational drug repositioning with random walk on a heterogeneous network. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 29994051 DOI: 10.1109/Tcbb.2018.2832078  0.369
2018 Luo J, Wang J, Shang J, Luo H, Li M, Wu F, Pan Y. GapReduce: a gap filling algorithm based on partitioned read sets. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 29993951 DOI: 10.1109/Tcbb.2018.2789909  0.369
2018 Ni P, Wang J, Zhong P, Li Y, Wu F, Pan Y. Constructing Disease Similarity Networks Based on Disease Module Theory. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 29993782 DOI: 10.1109/Tcbb.2018.2817624  0.395
2018 Lu C, Yang M, Luo F, Wu FX, Li M, Pan Y, Li Y, Wang J. Prediction of lncRNA-disease associations based on inductive matrix completion. Bioinformatics (Oxford, England). PMID 29718113 DOI: 10.1093/Bioinformatics/Bty327  0.335
2018 Li M, Li W, Wu FX, Pan Y, Wang J. Identifying essential proteins based on sub-network partition and prioritization by integrating subcellular localization information. Journal of Theoretical Biology. PMID 29571709 DOI: 10.1016/J.Jtbi.2018.03.029  0.497
2017 Yan C, Wang J, Ni P, Lan W, Wu F, Pan Y. DNRLMF-MDA:Predicting microRNA-disease associations based on similarities of microRNAs and diseases. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 29990253 DOI: 10.1109/Tcbb.2017.2776101  0.333
2017 Li M, Yang J, Wu FX, Pan Y, Wang J. DyNetViewer: a Cytoscape app for dynamic network construction, analysis and visualization. Bioinformatics (Oxford, England). PMID 29293938 DOI: 10.1093/Bioinformatics/Btx821  0.422
2017 Liu J, Li M, Pan Y, Wu FX, Chen X, Wang J. Classification of Schizophrenia Based on Individual Hierarchical Brain Networks Constructed From Structural MRI Images. Ieee Transactions On Nanobioscience. PMID 28910775 DOI: 10.1109/Tnb.2017.2751074  0.369
2017 Li M, Meng X, Zheng R, Wu FX, Li Y, Pan Y, Wang J. Identification of protein complexes by using a spatial and temporal active protein interaction network. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 28885159 DOI: 10.1109/Tcbb.2017.2749571  0.449
2017 Liu J, Wang J, Tang Z, Hu B, Wu FX, Pan Y. Improving Alzheimeres Disease Classification by Combining Multiple Measures. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 28749356 DOI: 10.1109/Tcbb.2017.2731849  0.332
2017 Peng W, Lan W, Zhong J, Wang J, Pan Y. A novel method of predicting microRNA-disease associations based on microRNA, disease, gene and environment factor networks. Methods (San Diego, Calif.). PMID 28576328 DOI: 10.1016/J.Ymeth.2017.05.024  0.421
2017 Li M, Wu B, Yan X, Luo J, Pan Y, Wu FX, Wang J. PECC: Correcting contigs based on paired-end read distribution. Computational Biology and Chemistry. PMID 28545961 DOI: 10.1016/J.Compbiolchem.2017.03.012  0.327
2017 Liu J, Wang J, Hu B, Wu FX, Pan Y. Alzheimer's Disease Classification Based on Individual Hierarchical Networks Constructed with 3D Texture Features. Ieee Transactions On Nanobioscience. PMID 28541903 DOI: 10.1109/Tnb.2017.2707139  0.335
2017 Li M, Ni P, Chen X, Wang J, Wu F, Pan Y. Construction of refined protein interaction network for predicting essential proteins. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 28186903 DOI: 10.1109/Tcbb.2017.2665482  0.492
2017 Lan W, Li M, Zhao K, Liu J, Wu FX, Pan Y, Wang J. LDAP: a web server for lncRNA-disease association prediction. Bioinformatics (Oxford, England). 33: 458-460. PMID 28172495 DOI: 10.1093/Bioinformatics/Btw639  0.369
2016 Liu J, Li M, Lan W, Wu FX, Pan Y, Wang J. Classification of Alzheimer's Disease Using Whole Brain Hierarchical Network. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 28114031 DOI: 10.1109/Tcbb.2016.2635144  0.325
2016 Peng W, Lan W, Yu Z, Wang J, Pan Y. A Framework for integrating multiple biological networks to predict microRNA-disease associations. Ieee Transactions On Nanobioscience. PMID 27913356 DOI: 10.1109/Tnb.2016.2633276  0.422
2016 Li G, Li M, Wang J, Wu J, Wu FX, Pan Y. Predicting essential proteins based on subcellular localization, orthology and PPI networks. Bmc Bioinformatics. 17: 279. PMID 27586883 DOI: 10.1186/S12859-016-1115-5  0.48
2016 Li M, Tang Y, Wu X, Wang J, Wu FX, Pan Y. C-DEVA: detection, evaluation, visualization and annotation of clusters from biological networks. Bio Systems. PMID 27530307 DOI: 10.1016/J.Biosystems.2016.08.004  0.4
2016 Li X, Wang J, Zhao B, Wu FX, Pan Y. Identification of protein complexes from multi-relationship protein interaction networks. Human Genomics. 10: 17. PMID 27461193 DOI: 10.1186/S40246-016-0069-Z  0.456
2016 Peng X, Wang J, Peng W, Wu FX, Pan Y. Protein-protein interactions: detection, reliability assessment and applications. Briefings in Bioinformatics. PMID 27444371 DOI: 10.1093/Bib/Bbw066  0.432
2016 Zhao B, Wang J, Li X, Wu FX. Essential Protein Discovery based on a Combination of Modularity and Conservatism. Methods (San Diego, Calif.). PMID 27402354 DOI: 10.1016/j.ymeth.2016.07.005  0.326
2016 Lan W, Wang J, Li M, Liu J, Wu FX, Pan Y. Predicting microRNA-disease associations based on improved microRNA and disease similarities. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. PMID 27392365 DOI: 10.1109/Tcbb.2016.2586190  0.313
2016 Luo H, Wang J, Li M, Luo J, Peng X, Wu FX, Pan Y. Drug repositioning based on comprehensive similarity measures and Bi-Random Walk algorithm. Bioinformatics (Oxford, England). PMID 27153662 DOI: 10.1093/Bioinformatics/Btw228  0.323
2016 Li M, Liao Z, He Y, Wang J, Luo J, Pan Y. ISEA: iterative seed-extension algorithm for de novo assembly using paired-end information and insert size distribution. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. PMID 27076460 DOI: 10.1109/Tcbb.2016.2550433  0.357
2016 Zhao B, Wang J, Li M, Li X, Li Y, Wu F, Pan Y. A new method for predicting protein functions from dynamic weighted interactome networks. Ieee Transactions On Nanobioscience. PMID 26955047 DOI: 10.1109/Tnb.2016.2536161  0.483
2016 Zhang Z, Wang J, Luo J, Ding X, Zhong J, Wang J, Wu FX, Pan Y. Sprites: detection of deletions from sequencing data by re-aligning split reads. Bioinformatics (Oxford, England). PMID 26833342 DOI: 10.1093/Bioinformatics/Btw053  0.345
2015 Ren J, Wang J, Li M, Wu F. Discovering essential proteins based on PPI network and protein complex. International Journal of Data Mining and Bioinformatics. 12: 24-43. PMID 26489140  0.33
2015 Wang J, Zhong J, Chen G, Li M, Wu FX, Pan Y. ClusterViz: A Cytoscape APP for Cluster Analysis of Biological Network. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 12: 815-22. PMID 26357321 DOI: 10.1109/Tcbb.2014.2361348  0.377
2015 Ding X, Wang J, Zelikovsky A, Guo X, Xie M, Pan Y. Searching High-Order SNP Combinations for Complex Diseases Based on Energy Distribution Difference. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 12: 695-704. PMID 26357280 DOI: 10.1109/Tcbb.2014.2363459  0.348
2015 Li M, Lu Y, Wang J, Wu FX, Pan Y. A Topology Potential-Based Method for Identifying Essential Proteins from PPI Networks. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 12: 372-83. PMID 26357224 DOI: 10.1109/Tcbb.2014.2361350  0.485
2015 Peng W, Wang J, Cheng Y, Lu Y, Wu F, Pan Y. UDoNC: An Algorithm for Identifying Essential Proteins Based on Protein Domains and Protein-Protein Interaction Networks. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 12: 276-88. PMID 26357216 DOI: 10.1109/Tcbb.2014.2338317  0.474
2015 Peng W, Wang J, Zhao B, Wang L. Identification of Protein Complexes Using Weighted PageRank-Nibble Algorithm and Core-Attachment Structure. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 12: 179-92. PMID 26357088 DOI: 10.1109/TCBB.2014.2343954  0.321
2015 Huang SY, Li M, Wang J, Pan Y. HybridDock: a hybrid protein-ligand docking protocol integrating protein- and ligand-based approaches. Journal of Chemical Information and Modeling. PMID 26317502 DOI: 10.1021/Acs.Jcim.5B00275  0.368
2015 Luo J, Wang J, Li W, Zhang Z, Wu FX, Li M, Pan Y. EPGA2: memory-efficient de novo assembler. Bioinformatics (Oxford, England). PMID 26315905 DOI: 10.1093/Bioinformatics/Btv487  0.31
2015 Peng W, Wang J, Wu F, Yi P. Detecting conserved protein complexes using a dividing-and-matching algorithm and unequally lenient criteria for network comparison. Algorithms For Molecular Biology : Amb. 10: 21. PMID 26136815 DOI: 10.1186/s13015-015-0053-5  0.335
2015 Peng X, Wang J, Wang J, Wu FX, Pan Y. Rechecking the Centrality-Lethality Rule in the Scope of Protein Subcellular Localization Interaction Networks. Plos One. 10: e0130743. PMID 26115027 DOI: 10.1371/Journal.Pone.0130743  0.468
2015 Peng X, Wang J, Zhang Z, Xiao Q, Li M, Pan Y. Re-alignment of the unmapped reads with base quality score. Bmc Bioinformatics. 16: S8. PMID 25860434 DOI: 10.1186/1471-2105-16-S5-S8  0.347
2015 Xiao Q, Wang J, Peng X, Wu FX, Pan Y. Identifying essential proteins from active PPI networks constructed with dynamic gene expression. Bmc Genomics. 16: S1. PMID 25707432 DOI: 10.1186/1471-2164-16-S3-S1  0.484
2015 Guo X, Yu N, Ding X, Wang J, Pan Y. DIME: a novel framework for de novo metagenomic sequence assembly. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 22: 159-77. PMID 25684202 DOI: 10.1089/Cmb.2014.0251  0.365
2015 Chen W, Li M, Wu X, Wang J. Identifying protein complexes based on the integration of PPI network and gene expression data. International Journal of Bioinformatics Research and Applications. 11: 30-44. PMID 25667384 DOI: 10.1504/IJBRA.2015.067337  0.334
2015 Tang Y, Li M, Wang J, Pan Y, Wu FX. CytoNCA: a cytoscape plugin for centrality analysis and evaluation of protein interaction networks. Bio Systems. 127: 67-72. PMID 25451770 DOI: 10.1016/J.Biosystems.2014.11.005  0.42
2015 Luo J, Wang J, Zhang Z, Wu FX, Li M, Pan Y. EPGA: de novo assembly using the distributions of reads and insert size. Bioinformatics (Oxford, England). 31: 825-33. PMID 25406329 DOI: 10.1093/bioinformatics/btu762  0.333
2014 Zhao B, Wang J, Li M, Wu FX, Pan Y. Detecting Protein Complexes Based on Uncertain Graph Model. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 11: 486-97. PMID 26356017 DOI: 10.1109/Tcbb.2013.2297915  0.453
2014 Tang X, Wang J, Zhong J, Pan Y. Predicting Essential Proteins Based on Weighted Degree Centrality. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 11: 407-18. PMID 26355787 DOI: 10.1109/Tcbb.2013.2295318  0.471
2014 Li M, Li Q, Ganegoda GU, Wang J, Wu F, Pan Y. Prioritization of orphan disease-causing genes using topological feature and GO similarity between proteins in interaction networks. Science China. Life Sciences. 57: 1064-71. PMID 25326068 DOI: 10.1007/S11427-014-4747-6  0.46
2014 Chen B, Li M, Wang J, Wu FX. Disease gene identification by using graph kernels and Markov random fields. Science China. Life Sciences. 57: 1054-63. PMID 25326067 DOI: 10.1007/s11427-014-4745-8  0.306
2014 Ren J, Zhou W, Wang J. Identifying hierarchical and overlapping protein complexes based on essential protein-protein interactions and "seed-expanding" method. Biomed Research International. 2014: 838714. PMID 25143945 DOI: 10.1155/2014/838714  0.304
2014 Zhao B, Wang J, Li M, Wu FX, Pan Y. Prediction of essential proteins based on overlapping essential modules. Ieee Transactions On Nanobioscience. 13: 415-24. PMID 25122840 DOI: 10.1109/Tnb.2014.2337912  0.491
2014 Peng W, Wang J, Chen L, Zhong J, Zhang Z, Pan Y. Predicting protein functions by using unbalanced bi-random walk algorithm on protein-protein interaction network and functional interrelationship network. Current Protein & Peptide Science. 15: 529-39. PMID 25059324 DOI: 10.2174/1389203715666140724085224  0.479
2014 Wu F, Chen L, Wang J, Alhajj R. Biomolecular networks and human diseases. Biomed Research International. 2014: 363717. PMID 25050344 DOI: 10.1155/2014/363717  0.327
2014 Li M, Chen W, Wang J, Wu FX, Pan Y. Identifying dynamic protein complexes based on gene expression profiles and PPI networks. Biomed Research International. 2014: 375262. PMID 24963481 DOI: 10.1155/2014/375262  0.455
2014 Tang X, Wang J, Li M, He Y, Pan Y. A novel algorithm for detecting protein complexes with the breadth first search. Biomed Research International. 2014: 354539. PMID 24818139 DOI: 10.1155/2014/354539  0.456
2014 Peng W, Wang J, Cai J, Chen L, Li M, Wu FX. Improving protein function prediction using domain and protein complexes in PPI networks. Bmc Systems Biology. 8: 35. PMID 24655481 DOI: 10.1186/1752-0509-8-35  0.312
2014 Li M, Zheng R, Zhang H, Wang J, Pan Y. Effective identification of essential proteins based on priori knowledge, network topology and gene expressions. Methods (San Diego, Calif.). 67: 325-33. PMID 24565748 DOI: 10.1016/J.Ymeth.2014.02.016  0.499
2014 Wang J, Peng X, Peng W, Wu FX. Dynamic protein interaction network construction and applications. Proteomics. 14: 338-52. PMID 24339054 DOI: 10.1002/pmic.201300257  0.304
2013 Zhong J, Wang J, Peng W, Zhang Z, Pan Y. Prediction of essential proteins based on gene expression programming. Bmc Genomics. 14: S7. PMID 24267033 DOI: 10.1186/1471-2164-14-S4-S7  0.432
2013 Tang X, Feng Q, Wang J, He Y, Pan Y. Clustering based on multiple biological information: approach for predicting protein complexes. Iet Systems Biology. 7: 223-30. PMID 24067423 DOI: 10.1049/Iet-Syb.2012.0052  0.45
2013 Li M, Wang JX, Wang H, Pan Y. Identification of essential proteins from weighted protein-protein interaction networks. Journal of Bioinformatics and Computational Biology. 11: 1341002. PMID 23796179 DOI: 10.1142/S0219720013410023  0.47
2013 Wang J, Peng X, Xiao Q, Li M, Pan Y. An effective method for refining predicted protein complexes based on protein activity and the mechanism of protein complex formation. Bmc Systems Biology. 7: 28. PMID 23537347 DOI: 10.1186/1752-0509-7-28  0.432
2013 Wang J, Peng X, Li M, Pan Y. Construction and application of dynamic protein interaction network based on time course gene expression data. Proteomics. 13: 301-312. PMID 23225755 DOI: 10.1002/Pmic.201200277  0.472
2013 Li M, Wu X, Pan Y, Wang J. hF‐measure: A new measurement for evaluating clusters in protein–protein interaction networks Proteomics. 13: 291-300. PMID 23193073 DOI: 10.1002/Pmic.201200436  0.371
2012 Wang J, Huang Y, Wu F, Pan Y. Symmetry Compression Method for Discovering Network Motifs Ieee/Acm Transactions On Computational Biology and Bioinformatics. 9: 1776-1789. PMID 23221087 DOI: 10.1109/Tcbb.2012.119  0.4
2012 Peng W, Wang J, Wang W, Liu Q, Wu FX, Pan Y. Iteration method for predicting essential proteins based on orthology and protein-protein interaction networks. Bmc Systems Biology. 6: 87. PMID 22808943 DOI: 10.1186/1752-0509-6-87  0.459
2012 Wang J, Chen G, Liu B, Li M, Pan Y. Identifying Protein Complexes From Interactome Based on Essential Proteins and Local Fitness Method Ieee Transactions On Nanobioscience. 11: 324-335. PMID 22711784 DOI: 10.1109/Tnb.2012.2197863  0.465
2012 Li M, Wu X, Wang J, Pan Y. Towards the identification of protein complexes and functional modules by integrating PPI network and gene expression data. Bmc Bioinformatics. 13: 109-109. PMID 22621308 DOI: 10.1186/1471-2105-13-109  0.458
2012 Li M, Zhang H, Wang JX, Pan Y. A new essential protein discovery method based on the integration of protein-protein interaction and gene expression data. Bmc Systems Biology. 6: 15. PMID 22405054 DOI: 10.1186/1752-0509-6-15  0.492
2012 Wang J, Li M, Wang H, Pan Y. Identification of Essential Proteins Based on Edge Clustering Coefficient Ieee/Acm Transactions On Computational Biology and Bioinformatics. 9: 1070-1080. PMID 22084147 DOI: 10.1109/Tcbb.2011.147  0.466
2011 Kim W, Li M, Wang J, Pan Y. Biological network motif detection and evaluation Bmc Systems Biology. 5: 1-13. PMID 22784624 DOI: 10.1186/1752-0509-5-S3-S5  0.415
2011 Tang X, Wang J, Liu B, Li M, Chen G, Pan Y. A comparison of the functional modules identified from time course and static PPI network data Bmc Bioinformatics. 12: 339-339. PMID 21849017 DOI: 10.1186/1471-2105-12-339  0.422
2011 Li M, Wang J, Chen X, Wang H, Pan Y. A local average connectivity-based method for identifying essential proteins from the network level Computational Biology and Chemistry. 35: 143-150. PMID 21704260 DOI: 10.1016/J.Compbiolchem.2011.04.002  0.472
2011 Wang J, Li M, Chen J, Pan Y. A fast hierarchical clustering algorithm for functional modules discovery in protein interaction networks. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 8: 607-20. PMID 20733244 DOI: 10.1109/Tcbb.2010.75  0.454
2010 Wang J, Li M, Deng Y, Pan Y. Recent advances in clustering methods for protein interaction networks. Bmc Genomics. 11: 1-19. PMID 21143777 DOI: 10.1186/1471-2164-11-S3-S10  0.464
2010 Wang J, Liu B, Li M, Pan Y. Identifying Protein Complexes from Interaction Networks Based on Clique Percolation and Distance Restriction Bmc Genomics. 11: 1-14. PMID 21047377 DOI: 10.1186/1471-2164-11-S2-S10  0.462
2010 Li M, Wang J, Chen J, Cai Z, Chen G. Identifying the overlapping complexes in protein interaction networks. International Journal of Data Mining and Bioinformatics. 4: 91-108. PMID 20376924 DOI: 10.1504/IJDMB.2010.030969  0.303
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