| Year |
Citation |
Score |
| 2022 |
Zheng M, Gang Li R, Song J, Zhao X, Tang L, Erhardt S, Chen W, Nguyen BH, Li X, Li M, Wang J, Evans SM, Christoffels VM, Li N, Wang J. Hippo-Yap Signaling Maintains Sinoatrial Node Homeostasis. Circulation. PMID 36317529 DOI: 10.1161/CIRCULATIONAHA.121.058777 |
0.301 |
|
| 2022 |
Zhao X, Tang L, Le TP, Nguyen BH, Chen W, Zheng M, Yamaguchi H, Dawson B, You S, Martinez-Traverso IM, Erhardt S, Wang J, Li M, Martin JF, Lee BH, et al. Yap and Taz promote osteogenesis and prevent chondrogenesis in neural crest cells in vitro and in vivo. Science Signaling. 15: eabn9009. PMID 36282910 DOI: 10.1126/scisignal.abn9009 |
0.335 |
|
| 2021 |
Liao X, Li M, Hu K, Wu FX, Gao X, Wang J. A sensitive repeat identification framework based on short and long reads. Nucleic Acids Research. PMID 34214175 DOI: 10.1093/nar/gkab563 |
0.38 |
|
| 2021 |
Liang Z, Li M, Zheng R, Tian Y, Yan X, Chen J, Wu FX, Wang J. SSRE: Cell Type Detection Based on Sparse Subspace Representation and Similarity Enhancement. Genomics, Proteomics & Bioinformatics. PMID 33647482 DOI: 10.1016/j.gpb.2020.09.004 |
0.379 |
|
| 2021 |
Fang S, Zheng R, Lei C, Zhou R, Wang J, Li M. In silico prediction of new mutations that can improve the binding abilities between 2019-nCoV coronavirus and human ACE2. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 33560990 DOI: 10.1109/TCBB.2021.3058265 |
0.33 |
|
| 2020 |
Lu C, Zeng M, Wu FX, Li M, Wang J. Improving circRNA-disease association prediction by sequence and ontology representations with convolutional and recurrent neural networks. Bioinformatics (Oxford, England). PMID 33367690 DOI: 10.1093/bioinformatics/btaa1077 |
0.404 |
|
| 2020 |
Fang S, Zheng R, Lei C, Wang J, Zheng R, Li M. Key residues influencing binding affinities of 2019-nCoV with ACE2 in different species. Briefings in Bioinformatics. PMID 33285566 DOI: 10.1093/bib/bbaa329 |
0.333 |
|
| 2020 |
Elhefnawy W, Li M, Wang J, Li Y. DeepFrag-k: a fragment-based deep learning approach for protein fold recognition. Bmc Bioinformatics. 21: 203. PMID 33203392 DOI: 10.1186/s12859-020-3504-z |
0.393 |
|
| 2020 |
Tang L, Hill MC, Wang J, Wang J, Martin JF, Li M. Predicting unrecognized enhancer-mediated genome topology by an ensemble machine learning model. Genome Research. PMID 33184104 DOI: 10.1101/gr.264606.120 |
0.399 |
|
| 2020 |
Haonan F, Zheng R, Wang J, Wu F, Li M. NIMCE: a gene regulatory network inference approach based on multi time delays causal entropy. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 33035155 DOI: 10.1109/TCBB.2020.3029846 |
0.401 |
|
| 2020 |
Lu C, Zeng M, Zhang F, Wu F, Li M, Wang J. Deep matrix factorization improves prediction of human circRNA-disease associations. Ieee Journal of Biomedical and Health Informatics. PMID 32750925 DOI: 10.1109/JBHI.2020.2999638 |
0.404 |
|
| 2020 |
Jiang H, Yang M, Chen X, Li M, Li Y, Wang J. miRTMC: A miRNA target prediction method based on matrix completion algorithm. Ieee Journal of Biomedical and Health Informatics. PMID 32287029 DOI: 10.1109/Jbhi.2020.2987034 |
0.348 |
|
| 2020 |
Zeng M, Lu C, Fei Z, Wu F, Li Y, Wang J, Li M. DMFLDA: A deep learning framework for predicting IncRNA-disease associations. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 32248123 DOI: 10.1109/Tcbb.2020.2983958 |
0.383 |
|
| 2020 |
Li X, Xiang J, Wang J, Li J, Wu FX, Li M. FUNMarker: Fusion network-based method to identify prognostic and heterogeneous breast cancer biomarkers. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 32070993 DOI: 10.1109/TCBB.2020.2973148 |
0.395 |
|
| 2020 |
Luo H, Li M, Yang M, Wu FX, Li Y, Wang J. Biomedical data and computational models for drug repositioning: a comprehensive review. Briefings in Bioinformatics. PMID 32043521 DOI: 10.1093/Bib/Bbz176 |
0.375 |
|
| 2019 |
Li X, Li M, Zheng R, Chen X, Xiang J, Wu FX, Wang J. Evaluation of Pathway Activation for a Single Sample Toward Inflammatory Bowel Disease Classification. Frontiers in Genetics. 10: 1401. PMID 32117426 DOI: 10.3389/fgene.2019.01401 |
0.396 |
|
| 2019 |
Tang L, Li M, Wu FX, Pan Y, Wang J. MAC: Merging Assemblies by Using Adjacency Algebraic Model and Classification. Frontiers in Genetics. 10: 1396. PMID 32082361 DOI: 10.3389/Fgene.2019.01396 |
0.364 |
|
| 2019 |
Chen X, Li M, Zheng R, Wu FX, Wang J. D3GRN: a data driven dynamic network construction method to infer gene regulatory networks. Bmc Genomics. 20: 929. PMID 31881937 DOI: 10.1186/s12864-019-6298-5 |
0.41 |
|
| 2019 |
Li M, Tang L, Wu FX, Pan Y, Wang J. CSA: a web service for the complete process of ChIP-Seq analysis. Bmc Bioinformatics. 20: 515. PMID 31874601 DOI: 10.1186/S12859-019-3090-0 |
0.339 |
|
| 2019 |
Lu C, Yang M, Li M, Li Y, Wu F, Wang J. Predicting human lncRNA-disease associations based on geometric matrix completion. Ieee Journal of Biomedical and Health Informatics. PMID 31825885 DOI: 10.1109/Jbhi.2019.2958389 |
0.391 |
|
| 2019 |
Liao X, Li M, Luo J, Zou Y, Wu F, Pan Y, Luo F, Wang J. EPGA-SC : A framework for de novo assembly of single-cell sequencing reads. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 31603794 DOI: 10.1109/Tcbb.2019.2945761 |
0.368 |
|
| 2019 |
Zeng M, Zhang F, Wu FX, Li Y, Wang J, Li M. Protein-protein interaction site prediction through combining local and global features with deep neural networks. Bioinformatics (Oxford, England). PMID 31593229 DOI: 10.1093/Bioinformatics/Btz699 |
0.413 |
|
| 2019 |
Zhang Z, Luo J, Shang J, Li M, Wu F, Pan Y, Wang J. Deletion detection method using the distribution of insert size and a precise alignment strategy. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 31403441 DOI: 10.1109/Tcbb.2019.2934407 |
0.384 |
|
| 2019 |
Xie C, Liu G, Li M, Fang Y, Qian K, Tang Y, Wu X, Lei X, Li X, Liu Q, Liu G, Liu J, Zhang Y, Huang Z, Hu Z, et al. Targeting TRPV1 on cellular plasticity regulated by Ovol 2 and Zeb 1 in hepatocellular carcinoma. Biomedicine & Pharmacotherapy = Biomedecine & Pharmacotherapie. 118: 109270. PMID 31401394 DOI: 10.1016/J.Biopha.2019.109270 |
0.305 |
|
| 2019 |
Li G, Li M, Peng W, Li Y, Pan Y, Wang J. A novel extended pareto optimality consensus model for predicting essential proteins. Journal of Theoretical Biology. PMID 31398315 DOI: 10.1016/J.Jtbi.2019.08.005 |
0.447 |
|
| 2019 |
Luo H, Wang J, Yan C, Li M, Wu F, Pan Y. A Novel Drug Repositioning Approach based on Collaborative Metric Learning. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 31283509 DOI: 10.1109/Tcbb.2019.2926453 |
0.347 |
|
| 2019 |
Li M, Wang Y, Zheng R, Shi X, Li Y, Wu F, Wang J. DeepDSC: A Deep Learning Method to Predict Drug Sensitivity of Cancer Cell Lines. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 31150344 DOI: 10.1109/Tcbb.2019.2919581 |
0.381 |
|
| 2019 |
Zheng R, Li M, Liang Z, Wu FX, Pan Y, Wang J. SinNLRR: a robust subspace clustering method for cell type detection by nonnegative and low rank representation. Bioinformatics (Oxford, England). PMID 30821315 DOI: 10.1093/Bioinformatics/Btz139 |
0.354 |
|
| 2019 |
Zheng R, Li M, Chen X, Zhao S, Wu F, Pan Y, Wang J. An ensemble method to reconstruct gene regulatory networks based on multivariate adaptive regression splines. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 30794516 DOI: 10.1109/Tcbb.2019.2900614 |
0.416 |
|
| 2019 |
Li X, Li W, Zeng M, Zheng R, Li M. Network-based methods for predicting essential genes or proteins: a survey. Briefings in Bioinformatics. PMID 30776072 DOI: 10.1093/bib/bbz017 |
0.306 |
|
| 2019 |
Yu Y, Li M, Liu L, Fei Z, Wu FX, Wang J. Automatic ICD code Assignment of Chinese Clinical Notes based on Multilayer Attention BiRNN. Journal of Biomedical Informatics. 103114. PMID 30768971 DOI: 10.1016/j.jbi.2019.103114 |
0.379 |
|
| 2019 |
Zeng M, Li M, Fei Z, Wu F, Li Y, Pan Y, Wang J. A deep learning framework for identifying essential proteins by integrating multiple types of biological information. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 30736002 DOI: 10.1109/Tcbb.2019.2897679 |
0.43 |
|
| 2019 |
Liao X, Li M, Zou Y, Wu F, Pan Y, Wang J. An efficient trimming algorithm based on multi-feature fusion scoring model for NGS data. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 30736001 DOI: 10.1109/Tcbb.2019.2897558 |
0.379 |
|
| 2019 |
Xiao Q, Luo P, Li M, Wang J, Wu FX. A novel core-attachment based method to identify dynamic protein complexes based on gene expression profiles and PPI Networks. Proteomics. e1800129. PMID 30650262 DOI: 10.1002/pmic.201800129 |
0.454 |
|
| 2018 |
Li G, Li M, Wang J, Li Y, Pan Y. United neighborhood closeness centrality and orthology for predicting essential proteins. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 30596582 DOI: 10.1109/Tcbb.2018.2889978 |
0.455 |
|
| 2018 |
Liu L, Yu Y, Fei Z, Li M, Wu FX, Li HD, Pan Y, Wang J. An interpretable boosting model to predict side effects of analgesics for osteoarthritis. Bmc Systems Biology. 12: 105. PMID 30463545 DOI: 10.1186/S12918-018-0624-4 |
0.345 |
|
| 2018 |
Zheng R, Li M, Chen X, Wu FX, Pan Y, Wang J. BiXGBoost: a scalable, flexible boosting based method for reconstructing gene regulatory networks. Bioinformatics (Oxford, England). PMID 30395189 DOI: 10.1093/Bioinformatics/Bty908 |
0.403 |
|
| 2018 |
Wu B, Li M, Liao X, Luo J, Wu F, Pan Y, Wang J. MEC: Misassembly Error Correction in contigs based on distribution of paired-end reads and statistics of GC-contents. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 30334805 DOI: 10.1109/Tcbb.2018.2876855 |
0.386 |
|
| 2018 |
Jiang H, Wang J, Li M, Lan W, Wu F, Pan Y. miRTRS: A Recommendation Algorithm for Predicting miRNA Targets. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 30281478 DOI: 10.1109/Tcbb.2018.2873299 |
0.333 |
|
| 2018 |
Li M, Gao H, Wang J, Wu FX. Control principles for complex biological networks. Briefings in Bioinformatics. PMID 30239577 DOI: 10.1093/bib/bby088 |
0.389 |
|
| 2018 |
Li M, Tang L, Wu FX, Pan Y, Wang J. SCOP: a novel scaffolding algorithm based on contig classification and optimization. Bioinformatics (Oxford, England). PMID 30184046 DOI: 10.1093/Bioinformatics/Bty773 |
0.368 |
|
| 2018 |
Liao X, Li M, Zou Y, Wu F, Pan Y, Luo F, Wang J. Improving de novo assembly based on read classification. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 30059317 DOI: 10.1109/Tcbb.2018.2861380 |
0.349 |
|
| 2018 |
Li M, Tang L, Liao Z, Luo J, Wu F, Pan Y, Wang J. A novel scaffolding algorithm based on contig error correction and path extension. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 30040649 DOI: 10.1109/Tcbb.2018.2858267 |
0.383 |
|
| 2018 |
Li M, Fei Z, Zeng M, Wu F, Li Y, Pan Y, Wang J. Automated ICD-9 Coding via A Deep Learning Approach. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 29994157 DOI: 10.1109/Tcbb.2018.2817488 |
0.379 |
|
| 2018 |
Luo H, Wang J, Li M, Luo J, Ni P, Zhao K, Wu F, Pan Y. Computational drug repositioning with random walk on a heterogeneous network. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 29994051 DOI: 10.1109/Tcbb.2018.2832078 |
0.379 |
|
| 2018 |
Luo J, Wang J, Shang J, Luo H, Li M, Wu F, Pan Y. GapReduce: a gap filling algorithm based on partitioned read sets. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 29993951 DOI: 10.1109/Tcbb.2018.2789909 |
0.376 |
|
| 2018 |
Lu C, Yang M, Luo F, Wu FX, Li M, Pan Y, Li Y, Wang J. Prediction of lncRNA-disease associations based on inductive matrix completion. Bioinformatics (Oxford, England). PMID 29718113 DOI: 10.1093/Bioinformatics/Bty327 |
0.361 |
|
| 2018 |
Li M, Li W, Wu FX, Pan Y, Wang J. Identifying essential proteins based on sub-network partition and prioritization by integrating subcellular localization information. Journal of Theoretical Biology. PMID 29571709 DOI: 10.1016/J.Jtbi.2018.03.029 |
0.472 |
|
| 2018 |
Luo H, Li M, Wang S, Liu Q, Li Y, Wang J. Computational Drug Repositioning using Low-Rank Matrix Approximation and Randomized Algorithms. Bioinformatics (Oxford, England). PMID 29365057 DOI: 10.1093/Bioinformatics/Bty013 |
0.35 |
|
| 2017 |
Li M, Yang J, Wu FX, Pan Y, Wang J. DyNetViewer: a Cytoscape app for dynamic network construction, analysis and visualization. Bioinformatics (Oxford, England). PMID 29293938 DOI: 10.1093/Bioinformatics/Btx821 |
0.421 |
|
| 2017 |
Li M, Huang P, Yan X, Wang J, Pan Y, Wu FX. VAliBS: a visual aligner for bisulfite sequences. Bmc Bioinformatics. 18: 410. PMID 29072146 DOI: 10.1186/S12859-017-1827-1 |
0.311 |
|
| 2017 |
Liu J, Li M, Pan Y, Wu FX, Chen X, Wang J. Classification of Schizophrenia Based on Individual Hierarchical Brain Networks Constructed From Structural MRI Images. Ieee Transactions On Nanobioscience. PMID 28910775 DOI: 10.1109/Tnb.2017.2751074 |
0.373 |
|
| 2017 |
Li M, Meng X, Zheng R, Wu FX, Li Y, Pan Y, Wang J. Identification of protein complexes by using a spatial and temporal active protein interaction network. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 28885159 DOI: 10.1109/Tcbb.2017.2749571 |
0.439 |
|
| 2017 |
Li M, Li D, Tang Y, Wu F, Wang J. CytoCluster: A Cytoscape Plugin for Cluster Analysis and Visualization of Biological Networks. International Journal of Molecular Sciences. 18. PMID 28858211 DOI: 10.3390/ijms18091880 |
0.43 |
|
| 2017 |
Wu L, Tang L, Li M, Wang J, Wu FX. Biomolecular Network Controllability With Drug Binding Information. Ieee Transactions On Nanobioscience. 16: 326-332. PMID 28809666 DOI: 10.1109/TNB.2017.2705106 |
0.395 |
|
| 2017 |
Li M, Wu B, Yan X, Luo J, Pan Y, Wu FX, Wang J. PECC: Correcting contigs based on paired-end read distribution. Computational Biology and Chemistry. PMID 28545961 DOI: 10.1016/J.Compbiolchem.2017.03.012 |
0.339 |
|
| 2017 |
Li M, Zheng R, Li Y, Wu FX, Wang J. MGT-SM: A Method for Constructing Cellular Signal Transduction Networks. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 28541220 DOI: 10.1109/Tcbb.2017.2705143 |
0.418 |
|
| 2017 |
Li M, Ni P, Chen X, Wang J, Wu F, Pan Y. Construction of refined protein interaction network for predicting essential proteins. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 28186903 DOI: 10.1109/Tcbb.2017.2665482 |
0.468 |
|
| 2017 |
Lan W, Li M, Zhao K, Liu J, Wu FX, Pan Y, Wang J. LDAP: a web server for lncRNA-disease association prediction. Bioinformatics (Oxford, England). 33: 458-460. PMID 28172495 DOI: 10.1093/Bioinformatics/Btw639 |
0.385 |
|
| 2016 |
Liu J, Li M, Lan W, Wu FX, Pan Y, Wang J. Classification of Alzheimer's Disease Using Whole Brain Hierarchical Network. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 28114031 DOI: 10.1109/Tcbb.2016.2635144 |
0.337 |
|
| 2016 |
Luo J, Wang J, Zhang Z, Li M, Wu FX. BOSS: a novel scaffolding algorithm based on an optimized scaffold graph. Bioinformatics (Oxford, England). PMID 27634951 DOI: 10.1093/bioinformatics/btw597 |
0.349 |
|
| 2016 |
Yaseen A, Nijim M, Williams B, Qian L, Li M, Wang J, Li Y. FLEXc: protein flexibility prediction using context-based statistics, predicted structural features, and sequence information. Bmc Bioinformatics. 17: 281. PMID 27587065 DOI: 10.1186/S12859-016-1117-3 |
0.403 |
|
| 2016 |
Li G, Li M, Wang J, Wu J, Wu FX, Pan Y. Predicting essential proteins based on subcellular localization, orthology and PPI networks. Bmc Bioinformatics. 17: 279. PMID 27586883 DOI: 10.1186/S12859-016-1115-5 |
0.453 |
|
| 2016 |
Li M, Tang Y, Wu X, Wang J, Wu FX, Pan Y. C-DEVA: detection, evaluation, visualization and annotation of clusters from biological networks. Bio Systems. PMID 27530307 DOI: 10.1016/J.Biosystems.2016.08.004 |
0.401 |
|
| 2016 |
Lan W, Wang J, Li M, Liu J, Wu FX, Pan Y. Predicting microRNA-disease associations based on improved microRNA and disease similarities. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. PMID 27392365 DOI: 10.1109/Tcbb.2016.2586190 |
0.332 |
|
| 2016 |
Wu L, Li M, Wang J, Wu FX. Minimum steering node set of complex networks and its applications to biomolecular networks. Iet Systems Biology. 10: 116-123. PMID 27187990 DOI: 10.1049/iet-syb.2015.0077 |
0.393 |
|
| 2016 |
Luo H, Wang J, Li M, Luo J, Peng X, Wu FX, Pan Y. Drug repositioning based on comprehensive similarity measures and Bi-Random Walk algorithm. Bioinformatics (Oxford, England). PMID 27153662 DOI: 10.1093/Bioinformatics/Btw228 |
0.337 |
|
| 2016 |
Chen B, Shang X, Li M, Wang J, Wu FX. Identifying individual-cancer-related genes by re-balancing the training samples. Ieee Transactions On Nanobioscience. PMID 27093705 DOI: 10.1109/TNB.2016.2553119 |
0.358 |
|
| 2016 |
Li M, Liao Z, He Y, Wang J, Luo J, Pan Y. ISEA: iterative seed-extension algorithm for de novo assembly using paired-end information and insert size distribution. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. PMID 27076460 DOI: 10.1109/Tcbb.2016.2550433 |
0.366 |
|
| 2016 |
Zhao B, Wang J, Li M, Li X, Li Y, Wu F, Pan Y. A new method for predicting protein functions from dynamic weighted interactome networks. Ieee Transactions On Nanobioscience. PMID 26955047 DOI: 10.1109/Tnb.2016.2536161 |
0.459 |
|
| 2015 |
Ren J, Wang J, Li M, Wu F. Discovering essential proteins based on PPI network and protein complex. International Journal of Data Mining and Bioinformatics. 12: 24-43. PMID 26489140 |
0.455 |
|
| 2015 |
Chen B, Li M, Wang J, Shang X, Wu FX. A fast and high performance multiple data integration algorithm for identifying human disease genes. Bmc Medical Genomics. 8: S2. PMID 26399620 DOI: 10.1186/1755-8794-8-S3-S2 |
0.423 |
|
| 2015 |
Wang J, Zhong J, Chen G, Li M, Wu FX, Pan Y. ClusterViz: A Cytoscape APP for Cluster Analysis of Biological Network. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 12: 815-22. PMID 26357321 DOI: 10.1109/Tcbb.2014.2361348 |
0.38 |
|
| 2015 |
Li M, Lu Y, Wang J, Wu FX, Pan Y. A Topology Potential-Based Method for Identifying Essential Proteins from PPI Networks. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 12: 372-83. PMID 26357224 DOI: 10.1109/Tcbb.2014.2361350 |
0.46 |
|
| 2015 |
Huang SY, Li M, Wang J, Pan Y. HybridDock: a hybrid protein-ligand docking protocol integrating protein- and ligand-based approaches. Journal of Chemical Information and Modeling. PMID 26317502 DOI: 10.1021/Acs.Jcim.5B00275 |
0.371 |
|
| 2015 |
Luo J, Wang J, Li W, Zhang Z, Wu FX, Li M, Pan Y. EPGA2: memory-efficient de novo assembler. Bioinformatics (Oxford, England). PMID 26315905 DOI: 10.1093/Bioinformatics/Btv487 |
0.324 |
|
| 2015 |
Peng X, Wang J, Zhang Z, Xiao Q, Li M, Pan Y. Re-alignment of the unmapped reads with base quality score. Bmc Bioinformatics. 16: S8. PMID 25860434 DOI: 10.1186/1471-2105-16-S5-S8 |
0.356 |
|
| 2015 |
Chen L, Cheng Y, Li M, Wang J. Proteins involved in more domain types tend to be more essential. International Journal of Bioinformatics Research and Applications. 11: 91-110. PMID 25786790 DOI: 10.1504/IJBRA.2015.068086 |
0.422 |
|
| 2015 |
Chen W, Li M, Wu X, Wang J. Identifying protein complexes based on the integration of PPI network and gene expression data. International Journal of Bioinformatics Research and Applications. 11: 30-44. PMID 25667384 DOI: 10.1504/IJBRA.2015.067337 |
0.461 |
|
| 2015 |
Tang Y, Li M, Wang J, Pan Y, Wu FX. CytoNCA: a cytoscape plugin for centrality analysis and evaluation of protein interaction networks. Bio Systems. 127: 67-72. PMID 25451770 DOI: 10.1016/J.Biosystems.2014.11.005 |
0.416 |
|
| 2015 |
Luo J, Wang J, Zhang Z, Wu FX, Li M, Pan Y. EPGA: de novo assembly using the distributions of reads and insert size. Bioinformatics (Oxford, England). 31: 825-33. PMID 25406329 DOI: 10.1093/bioinformatics/btu762 |
0.346 |
|
| 2014 |
Zhao B, Wang J, Li M, Wu FX, Pan Y. Detecting Protein Complexes Based on Uncertain Graph Model. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 11: 486-97. PMID 26356017 DOI: 10.1109/Tcbb.2013.2297915 |
0.438 |
|
| 2014 |
Ganegoda G, Wang J, Wu FX, Li M. Prediction of disease genes using tissue-specified gene-gene network. Bmc Systems Biology. 8: S3. PMID 25350876 DOI: 10.1186/1752-0509-8-S3-S3 |
0.358 |
|
| 2014 |
Li M, Zhang J, Liu Q, Wang J, Wu FX. Prediction of disease-related genes based on weighted tissue-specific networks by using DNA methylation. Bmc Medical Genomics. 7: S4. PMID 25350763 DOI: 10.1186/1755-8794-7-S2-S4 |
0.443 |
|
| 2014 |
Chen B, Wang J, Li M, Wu FX. Identifying disease genes by integrating multiple data sources. Bmc Medical Genomics. 7: S2. PMID 25350511 DOI: 10.1186/1755-8794-7-S2-S2 |
0.395 |
|
| 2014 |
Li M, Li Q, Ganegoda GU, Wang J, Wu F, Pan Y. Prioritization of orphan disease-causing genes using topological feature and GO similarity between proteins in interaction networks. Science China. Life Sciences. 57: 1064-71. PMID 25326068 DOI: 10.1007/S11427-014-4747-6 |
0.456 |
|
| 2014 |
Chen B, Li M, Wang J, Wu FX. Disease gene identification by using graph kernels and Markov random fields. Science China. Life Sciences. 57: 1054-63. PMID 25326067 DOI: 10.1007/s11427-014-4745-8 |
0.455 |
|
| 2014 |
Li Q, Li M, Ma L, Li W, Wu X, Richards J, Fu G, Xu W, Bythwood T, Li X, Wang J, Song Q. A method to evaluate genome-wide methylation in archival formalin-fixed, paraffin-embedded ovarian epithelial cells. Plos One. 9: e104481. PMID 25133528 DOI: 10.1371/Journal.Pone.0104481 |
0.311 |
|
| 2014 |
Zhao B, Wang J, Li M, Wu FX, Pan Y. Prediction of essential proteins based on overlapping essential modules. Ieee Transactions On Nanobioscience. 13: 415-24. PMID 25122840 DOI: 10.1109/Tnb.2014.2337912 |
0.467 |
|
| 2014 |
Li M, Chen W, Wang J, Wu FX, Pan Y. Identifying dynamic protein complexes based on gene expression profiles and PPI networks. Biomed Research International. 2014: 375262. PMID 24963481 DOI: 10.1155/2014/375262 |
0.438 |
|
| 2014 |
Tang X, Wang J, Li M, He Y, Pan Y. A novel algorithm for detecting protein complexes with the breadth first search. Biomed Research International. 2014: 354539. PMID 24818139 DOI: 10.1155/2014/354539 |
0.435 |
|
| 2014 |
Peng W, Wang J, Cai J, Chen L, Li M, Wu FX. Improving protein function prediction using domain and protein complexes in PPI networks. Bmc Systems Biology. 8: 35. PMID 24655481 DOI: 10.1186/1752-0509-8-35 |
0.445 |
|
| 2014 |
Li M, Zheng R, Zhang H, Wang J, Pan Y. Effective identification of essential proteins based on priori knowledge, network topology and gene expressions. Methods (San Diego, Calif.). 67: 325-33. PMID 24565748 DOI: 10.1016/J.Ymeth.2014.02.016 |
0.476 |
|
| 2013 |
Ren J, Wang J, Li M, Wang L. Identifying protein complexes based on density and modularity in protein-protein interaction network. Bmc Systems Biology. 7: S12. PMID 24565048 DOI: 10.1186/1752-0509-7-S4-S12 |
0.417 |
|
| 2013 |
Li M, Wang JX, Wang H, Pan Y. Identification of essential proteins from weighted protein-protein interaction networks. Journal of Bioinformatics and Computational Biology. 11: 1341002. PMID 23796179 DOI: 10.1142/S0219720013410023 |
0.445 |
|
| 2013 |
Wang J, Peng X, Xiao Q, Li M, Pan Y. An effective method for refining predicted protein complexes based on protein activity and the mechanism of protein complex formation. Bmc Systems Biology. 7: 28. PMID 23537347 DOI: 10.1186/1752-0509-7-28 |
0.416 |
|
| 2013 |
Elbashir MK, Sheng Y, Wang J, Wu F, Li M. Predicting β-turns in protein using kernel logistic regression. Biomed Research International. 2013: 870372. PMID 23509793 DOI: 10.1155/2013/870372 |
0.374 |
|
| 2013 |
Wang J, Peng X, Li M, Pan Y. Construction and application of dynamic protein interaction network based on time course gene expression data. Proteomics. 13: 301-312. PMID 23225755 DOI: 10.1002/Pmic.201200277 |
0.453 |
|
| 2013 |
Li M, Wu X, Pan Y, Wang J. hF‐measure: A new measurement for evaluating clusters in protein–protein interaction networks Proteomics. 13: 291-300. PMID 23193073 DOI: 10.1002/Pmic.201200436 |
0.372 |
|
| 2012 |
Wang J, Ren J, Li M, Wu FX. Identification of hierarchical and overlapping functional modules in PPI networks. Ieee Transactions On Nanobioscience. 11: 386-93. PMID 22955967 DOI: 10.1109/TNB.2012.2210907 |
0.391 |
|
| 2012 |
Wang J, Chen G, Liu B, Li M, Pan Y. Identifying Protein Complexes From Interactome Based on Essential Proteins and Local Fitness Method Ieee Transactions On Nanobioscience. 11: 324-335. PMID 22711784 DOI: 10.1109/Tnb.2012.2197863 |
0.47 |
|
| 2012 |
Li M, Wu X, Wang J, Pan Y. Towards the identification of protein complexes and functional modules by integrating PPI network and gene expression data. Bmc Bioinformatics. 13: 109-109. PMID 22621308 DOI: 10.1186/1471-2105-13-109 |
0.47 |
|
| 2012 |
Li M, Zhang H, Wang JX, Pan Y. A new essential protein discovery method based on the integration of protein-protein interaction and gene expression data. Bmc Systems Biology. 6: 15. PMID 22405054 DOI: 10.1186/1752-0509-6-15 |
0.493 |
|
| 2012 |
Wang J, Li M, Wang H, Pan Y. Identification of Essential Proteins Based on Edge Clustering Coefficient Ieee/Acm Transactions On Computational Biology and Bioinformatics. 9: 1070-1080. PMID 22084147 DOI: 10.1109/Tcbb.2011.147 |
0.469 |
|
| 2011 |
Kim W, Li M, Wang J, Pan Y. Biological network motif detection and evaluation Bmc Systems Biology. 5: 1-13. PMID 22784624 DOI: 10.1186/1752-0509-5-S3-S5 |
0.437 |
|
| 2011 |
Wang J, Chen G, Li M, Pan Y. Integration of breast cancer gene signatures based on graph centrality Bmc Systems Biology. 5: 1-10. PMID 22784616 DOI: 10.1186/1752-0509-5-S3-S10 |
0.333 |
|
| 2011 |
Tang X, Wang J, Liu B, Li M, Chen G, Pan Y. A comparison of the functional modules identified from time course and static PPI network data Bmc Bioinformatics. 12: 339-339. PMID 21849017 DOI: 10.1186/1471-2105-12-339 |
0.444 |
|
| 2011 |
Li M, Wang J, Chen X, Wang H, Pan Y. A local average connectivity-based method for identifying essential proteins from the network level Computational Biology and Chemistry. 35: 143-150. PMID 21704260 DOI: 10.1016/J.Compbiolchem.2011.04.002 |
0.471 |
|
| 2011 |
Wang J, Li M, Chen J, Pan Y. A fast hierarchical clustering algorithm for functional modules discovery in protein interaction networks. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 8: 607-20. PMID 20733244 DOI: 10.1109/Tcbb.2010.75 |
0.469 |
|
| 2010 |
Wang J, Li M, Deng Y, Pan Y. Recent advances in clustering methods for protein interaction networks. Bmc Genomics. 11: 1-19. PMID 21143777 DOI: 10.1186/1471-2164-11-S3-S10 |
0.47 |
|
| 2010 |
Wang J, Liu B, Li M, Pan Y. Identifying Protein Complexes from Interaction Networks Based on Clique Percolation and Distance Restriction Bmc Genomics. 11: 1-14. PMID 21047377 DOI: 10.1186/1471-2164-11-S2-S10 |
0.468 |
|
| 2010 |
Li M, Wang J, Chen J, Cai Z, Chen G. Identifying the overlapping complexes in protein interaction networks. International Journal of Data Mining and Bioinformatics. 4: 91-108. PMID 20376924 DOI: 10.1504/IJDMB.2010.030969 |
0.465 |
|
| 2008 |
Li M, Chen JE, Wang JX, Hu B, Chen G. Modifying the DPClus algorithm for identifying protein complexes based on new topological structures. Bmc Bioinformatics. 9: 398. PMID 18816408 DOI: 10.1186/1471-2105-9-398 |
0.462 |
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