Melanie I. Stefan, PhD - Publications

2015- Centre for Integrative Physiology University of Edinburgh, Edinburgh, Scotland, United Kingdom 
Synaptic signalling; Calcium signalling; multi-state modelling

16 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Waltemath D, Golebiewski M, Blinov ML, Gleeson P, Hermjakob H, Hucka M, Inau ET, Keating SM, König M, Krebs O, Malik-Sheriff RS, Nickerson D, Oberortner E, Sauro HM, Schreiber F, ... ... Stefan MI, et al. The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE). Journal of Integrative Bioinformatics. PMID 32598315 DOI: 10.1515/jib-2020-0005  0.52
2019 Pharris MC, Patel NM, VanDyk TG, Bartol TM, Sejnowski TJ, Kennedy MB, Stefan MI, Kinzer-Ursem TL. A Multi-State Model of the CaMKII Dodecamer Suggests a Role for Calmodulin in Maintenance of Autophosphorylation. Plos Computational Biology. 15: e1006941. PMID 31869343 DOI: 10.1371/journal.pcbi.1006941  0.4
2016 Rodriguez N, Pettit JB, Dalle Pezze P, Li L, Henry A, van Iersel MP, Jalowicki G, Kutmon M, Natarajan KN, Tolnay D, Stefan MI, Evelo CT, Le Novère N. The systems biology format converter. Bmc Bioinformatics. 17: 154. PMID 27044654 DOI: 10.1186/s12859-016-1000-2  0.96
2015 Stefan MI, Gutlerner JL, Born RT, Springer M. The quantitative methods boot camp: teaching quantitative thinking and computing skills to graduate students in the life sciences. Plos Computational Biology. 11: e1004208. PMID 25880064 DOI: 10.1371/journal.pcbi.1004208  0.96
2014 Marino J, Stefan MI, Blackford S. Ten simple rules for finishing your PhD. Plos Computational Biology. 10: e1003954. PMID 25474445 DOI: 10.1371/journal.pcbi.1003954  0.96
2014 Stefan MI, Bartol TM, Sejnowski TJ, Kennedy MB. Multi-state modeling of biomolecules. Plos Computational Biology. 10: e1003844. PMID 25254957 DOI: 10.1371/journal.pcbi.1003844  0.96
2014 Dutta Roy R, Stefan MI, Rosenmund C. Biophysical properties of presynaptic short-term plasticity in hippocampal neurons: insights from electrophysiology, imaging and mechanistic models. Frontiers in Cellular Neuroscience. 8: 141. PMID 24904286 DOI: 10.3389/fncel.2014.00141  0.96
2013 Stefan MI, Le Novère N. Cooperative binding. Plos Computational Biology. 9: e1003106. PMID 23843752 DOI: 10.1371/journal.pcbi.1003106  0.96
2012 Li L, Stefan MI, Le Novère N. Calcium input frequency, duration and amplitude differentially modulate the relative activation of calcineurin and CaMKII. Plos One. 7: e43810. PMID 22962589 DOI: 10.1371/journal.pone.0043810  0.96
2012 Stefan MI, Marshall DP, Le Novère N. Structural analysis and stochastic modelling suggest a mechanism for calmodulin trapping by CaMKII. Plos One. 7: e29406. PMID 22279535 DOI: 10.1371/journal.pone.0029406  0.96
2011 Dall'Olio GM, Marino J, Schubert M, Keys KL, Stefan MI, Gillespie CS, Poulain P, Shameer K, Sugar R, Invergo BM, Jensen LJ, Bertranpetit J, Laayouni H. Ten simple rules for getting help from online scientific communities. Plos Computational Biology. 7: e1002202. PMID 21980280 DOI: 10.1371/journal.pcbi.1002202  0.96
2010 Li C, Donizelli M, Rodriguez N, Dharuri H, Endler L, Chelliah V, Li L, He E, Henry A, Stefan MI, Snoep JL, Hucka M, Le Novère N, Laibe C. BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. Bmc Systems Biology. 4: 92. PMID 20587024 DOI: 10.1186/1752-0509-4-92  0.96
2010 Edelstein SJ, Stefan MI, Le Novère N. Ligand depletion in vivo modulates the dynamic range and cooperativity of signal transduction. Plos One. 5: e8449. PMID 20052284 DOI: 10.1371/journal.pone.0008449  0.96
2009 Stefan MI, Edelstein SJ, Le Novère N. Computing phenomenologic Adair-Klotz constants from microscopic MWC parameters. Bmc Systems Biology. 3: 68. PMID 19602261 DOI: 10.1186/1752-0509-3-68  0.96
2008 Stefan MI, Edelstein SJ, Le Novère N. An allosteric model of calmodulin explains differential activation of PP2B and CaMKII. Proceedings of the National Academy of Sciences of the United States of America. 105: 10768-73. PMID 18669651 DOI: 10.1073/pnas.0804672105  0.96
2008 Stefan MI, Edelstein SJ, Le Novère N. An allosteric model of calmodulin explains differential activation of PP2B and CaMKII (Proceedings of the National Academy of Sciences of the United States of America (2008) 105, 31, (10768-10773) DOI: 10.1073/pnas.0804672105) Proceedings of the National Academy of Sciences of the United States of America. 105: 19024. DOI: 10.1073/pnas.0810309105  0.96
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