| Year |
Citation |
Score |
| 2023 |
Park SW, Sun K, Abbott S, Sender R, Bar-On YM, Weitz JS, Funk S, Grenfell BT, Backer JA, Wallinga J, Viboud C, Dushoff J. Inferring the differences in incubation-period and generation-interval distributions of the Delta and Omicron variants of SARS-CoV-2. Proceedings of the National Academy of Sciences of the United States of America. 120: e2221887120. PMID 37216529 DOI: 10.1073/pnas.2221887120 |
0.517 |
|
| 2023 |
Park SW, Dushoff J, Grenfell BT, Weitz JS. Intermediate levels of asymptomatic transmission can lead to the highest epidemic fatalities. Pnas Nexus. 2: pgad106. PMID 37091542 DOI: 10.1093/pnasnexus/pgad106 |
0.53 |
|
| 2023 |
Harris JD, Park SW, Dushoff J, Weitz JS. How time-scale differences in asymptomatic and symptomatic transmission shape SARS-CoV-2 outbreak dynamics. Epidemics. 42: 100664. PMID 36706626 DOI: 10.1016/j.epidem.2022.100664 |
0.538 |
|
| 2022 |
Park SW, Bolker BM, Funk S, Metcalf CJE, Weitz JS, Grenfell BT, Dushoff J. The importance of the generation interval in investigating dynamics and control of new SARS-CoV-2 variants. Journal of the Royal Society, Interface. 19: 20220173. PMID 35702867 DOI: 10.1098/rsif.2022.0173 |
0.521 |
|
| 2021 |
Park SW, Sun K, Champredon D, Li M, Bolker BM, Earn DJD, Weitz JS, Grenfell BT, Dushoff J. Forward-looking serial intervals correctly link epidemic growth to reproduction numbers. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33361331 DOI: 10.1073/pnas.2011548118 |
0.503 |
|
| 2020 |
Li G, Cortez MH, Dushoff J, Weitz JS. When to be temperate: on the fitness benefits of lysis vs. lysogeny. Virus Evolution. 6: veaa042. PMID 36204422 DOI: 10.1093/ve/veaa042 |
0.54 |
|
| 2020 |
Weitz JS, Park SW, Eksin C, Dushoff J. Awareness-driven behavior changes can shift the shape of epidemics away from peaks and toward plateaus, shoulders, and oscillations. Proceedings of the National Academy of Sciences of the United States of America. PMID 33262277 DOI: 10.1073/pnas.2009911117 |
0.525 |
|
| 2020 |
Earn DJD, Ma J, Poinar H, Dushoff J, Bolker BM. Acceleration of plague outbreaks in the second pandemic. Proceedings of the National Academy of Sciences of the United States of America. 117: 27703-27711. PMID 33077604 DOI: 10.1073/pnas.2004904117 |
0.548 |
|
| 2020 |
Park SW, Bolker BM, Champredon D, Earn DJD, Li M, Weitz JS, Grenfell BT, Dushoff J. Reconciling early-outbreak estimates of the basic reproductive number and its uncertainty: framework and applications to the novel coronavirus (SARS-CoV-2) outbreak. Journal of the Royal Society, Interface. 17: 20200144. PMID 32693748 DOI: 10.1098/Rsif.2020.0144 |
0.529 |
|
| 2020 |
Weitz JS, Beckett SJ, Coenen AR, Demory D, Dominguez-Mirazo M, Dushoff J, Leung CY, Li G, Magalie A, Park SW, Rodriguez-Gonzalez R, Shivam S, Zhao C. Intervention Serology and Interaction Substitution: Modeling the Role of 'Shield Immunity' in Reducing COVID-19 Epidemic Spread. Medrxiv : the Preprint Server For Health Sciences. PMID 32511605 DOI: 10.1101/2020.04.01.20049767 |
0.541 |
|
| 2020 |
Park SW, Cornforth DM, Dushoff J, Weitz JS. The time scale of asymptomatic transmission affects estimates of epidemic potential in the COVID-19 outbreak. Medrxiv : the Preprint Server For Health Sciences. PMID 32511456 DOI: 10.1101/2020.03.09.20033514 |
0.546 |
|
| 2020 |
Park SW, Cornforth DM, Dushoff J, Weitz JS. The time scale of asymptomatic transmission affects estimates of epidemic potential in the COVID-19 outbreak. Epidemics. 31: 100392. PMID 32446187 DOI: 10.1016/J.Epidem.2020.100392 |
0.545 |
|
| 2020 |
Weitz JS, Beckett SJ, Coenen AR, Demory D, Dominguez-Mirazo M, Dushoff J, Leung CY, Li G, Măgălie A, Park SW, Rodriguez-Gonzalez R, Shivam S, Zhao CY. Modeling shield immunity to reduce COVID-19 epidemic spread. Nature Medicine. PMID 32382154 DOI: 10.1038/S41591-020-0895-3 |
0.535 |
|
| 2019 |
Li M, Bolker BM, Dushoff J, Ma J, Earn DJD. Patterns of seasonal and pandemic influenza-associated health care and mortality in Ontario, Canada. Bmc Public Health. 19: 1237. PMID 31492122 DOI: 10.1186/S12889-019-7369-X |
0.54 |
|
| 2019 |
Park SW, Champredon D, Weitz JS, Dushoff J. A practical generation-interval-based approach to inferring the strength of epidemics from their speed. Epidemics. PMID 30799184 DOI: 10.1016/J.Epidem.2018.12.002 |
0.493 |
|
| 2017 |
Weitz JS, Beckett SJ, Brum JR, Cael BB, Dushoff J. Lysis, lysogeny and virus-microbe ratios. Nature. 549: E1-E3. PMID 28933438 DOI: 10.1038/Nature23295 |
0.511 |
|
| 2017 |
Rekart ML, Ndifon W, Brunham RC, Dushoff J, Park SW, Rawat S, Cameron CE. A double-edged sword: does highly active antiretroviral therapy contribute to syphilis incidence by impairing immunity to Treponema pallidum? Sexually Transmitted Infections. PMID 28093460 DOI: 10.1136/Sextrans-2016-052870 |
0.627 |
|
| 2016 |
Taylor BP, Dushoff J, Weitz JS. Stochasticity and the limits to confidence when estimating R0 of Ebola and other emerging infectious diseases. Journal of Theoretical Biology. PMID 27524644 DOI: 10.1016/J.Jtbi.2016.08.016 |
0.525 |
|
| 2016 |
Ndifon W, Dushoff J. The Hayflick Limit May Determine the Effective Clonal Diversity of Naive T Cells. Journal of Immunology (Baltimore, Md. : 1950). PMID 27183600 DOI: 10.4049/Jimmunol.1502343 |
0.628 |
|
| 2015 |
Pulliam JR, Bellan SE, Gambhir M, Meyers LA, Dushoff J. Evaluating Ebola vaccine trials: insights from simulation. The Lancet. Infectious Diseases. 15: 1134. PMID 26461945 DOI: 10.1016/S1473-3099(15)00303-5 |
0.665 |
|
| 2015 |
Bellan SE, Pulliam JR, Pearson CA, Champredon D, Fox SJ, Skrip L, Galvani AP, Gambhir M, Lopman BA, Porco TC, Meyers LA, Dushoff J. Statistical power and validity of Ebola vaccine trials in Sierra Leone: a simulation study of trial design and analysis. The Lancet. Infectious Diseases. 15: 703-10. PMID 25886798 DOI: 10.1016/S1473-3099(15)70139-8 |
0.676 |
|
| 2015 |
Weitz JS, Dushoff J. Modeling post-death transmission of Ebola: challenges for inference and opportunities for control. Scientific Reports. 5: 8751. PMID 25736239 DOI: 10.1038/Srep08751 |
0.54 |
|
| 2014 |
Bellan SE, Pulliam JR, Dushoff J, Meyers LA. Ebola virus vaccine trials: the ethical mandate for a therapeutic safety net. Bmj (Clinical Research Ed.). 349: g7518. PMID 25498325 DOI: 10.1136/Bmj.G7518 |
0.672 |
|
| 2014 |
Bellan SE, Pulliam JR, Dushoff J, Meyers LA. Ebola control: effect of asymptomatic infection and acquired immunity. Lancet (London, England). 384: 1499-500. PMID 25390569 DOI: 10.1016/S0140-6736(14)61839-0 |
0.652 |
|
| 2014 |
Ma J, Dushoff J, Bolker BM, Earn DJ. Estimating initial epidemic growth rates. Bulletin of Mathematical Biology. 76: 245-60. PMID 24272389 DOI: 10.1007/S11538-013-9918-2 |
0.55 |
|
| 2014 |
Pulliam JR, Dushoff J. Re: "The 'case-chaos study' L adjunct or alternative to conventional case-control study methodology". American Journal of Epidemiology. 179: 261-2. PMID 24125919 DOI: 10.1093/aje/kwt242 |
0.63 |
|
| 2013 |
Akhmetzhanov AR, Worden L, Dushoff J. Effects of mixing in threshold models of social behavior. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 88: 012816. PMID 23944527 DOI: 10.1103/Physreve.88.012816 |
0.585 |
|
| 2013 |
He D, Dushoff J, Day T, Ma J, Earn DJ. Inferring the causes of the three waves of the 1918 influenza pandemic in England and Wales. Proceedings. Biological Sciences / the Royal Society. 280: 20131345. PMID 23843396 DOI: 10.1098/Rspb.2013.1345 |
0.573 |
|
| 2013 |
Haegeman B, Hamelin J, Moriarty J, Neal P, Dushoff J, Weitz JS. Robust estimation of microbial diversity in theory and in practice. The Isme Journal. 7: 1092-101. PMID 23407313 DOI: 10.1038/Ismej.2013.10 |
0.503 |
|
| 2012 |
Jiang X, Langille MG, Neches RY, Elliot M, Levin SA, Eisen JA, Weitz JS, Dushoff J. Functional biogeography of ocean microbes revealed through non-negative matrix factorization. Plos One. 7: e43866. PMID 23049741 DOI: 10.1371/Journal.Pone.0043866 |
0.591 |
|
| 2012 |
Bellan SE, Pulliam JR, Scott JC, Dushoff J. How to make epidemiological training infectious. Plos Biology. 10: e1001295. PMID 22509129 DOI: 10.1371/journal.pbio.1001295 |
0.654 |
|
| 2012 |
Pulliam JR, Epstein JH, Dushoff J, Rahman SA, Bunning M, Jamaluddin AA, Hyatt AD, Field HE, Dobson AP, Daszak P. Agricultural intensification, priming for persistence and the emergence of Nipah virus: a lethal bat-borne zoonosis. Journal of the Royal Society, Interface / the Royal Society. 9: 89-101. PMID 21632614 DOI: 10.1098/Rsif.2011.0223 |
0.703 |
|
| 2012 |
Jiang X, Weitz JS, Dushoff J. A non-negative matrix factorization framework for identifying modular patterns in metagenomic profile data. Journal of Mathematical Biology. 64: 697-711. PMID 21630089 DOI: 10.1007/S00285-011-0428-2 |
0.492 |
|
| 2011 |
Ma J, Dushoff J, Earn DJ. Age-specific mortality risk from pandemic influenza. Journal of Theoretical Biology. 288: 29-34. PMID 21856313 DOI: 10.1016/J.Jtbi.2011.08.003 |
0.577 |
|
| 2011 |
Kryazhimskiy S, Dushoff J, Bazykin GA, Plotkin JB. Prevalence of epistasis in the evolution of influenza A surface proteins. Plos Genetics. 7: e1001301. PMID 21390205 DOI: 10.1371/Journal.Pgen.1001301 |
0.752 |
|
| 2010 |
Lichstein JW, Dushoff J, Ogle K, Chen A, Purves DW, Caspersen JP, Pacala SW. Unlocking the forest inventory data: relating individual tree performance to unmeasured environmental factors. Ecological Applications : a Publication of the Ecological Society of America. 20: 684-99. PMID 20437956 DOI: 10.1890/08-2334.1 |
0.619 |
|
| 2010 |
Boettiger C, Dushoff J, Weitz JS. Fluctuation domains in adaptive evolution. Theoretical Population Biology. 77: 6-13. PMID 19843477 DOI: 10.1016/J.Tpb.2009.10.003 |
0.497 |
|
| 2009 |
Goldstein E, Dushoff J, Ma J, Plotkin JB, Earn DJ, Lipsitch M. Reconstructing influenza incidence by deconvolution of daily mortality time series. Proceedings of the National Academy of Sciences of the United States of America. 106: 21825-9. PMID 20080801 DOI: 10.1073/Pnas.0902958106 |
0.693 |
|
| 2009 |
Kislyuk A, Bhatnagar S, Dushoff J, Weitz JS. Unsupervised statistical clustering of environmental shotgun sequences. Bmc Bioinformatics. 10: 316. PMID 19799776 DOI: 10.1186/1471-2105-10-316 |
0.496 |
|
| 2009 |
Ndifon W, Plotkin JB, Dushoff J. On the accessibility of adaptive phenotypes of a bacterial metabolic network. Plos Computational Biology. 5: e1000472. PMID 19696877 DOI: 10.1371/Journal.Pcbi.1000472 |
0.718 |
|
| 2009 |
Ndifon W, Dushoff J, Levin SA. On the use of hemagglutination-inhibition for influenza surveillance: surveillance data are predictive of influenza vaccine effectiveness. Vaccine. 27: 2447-52. PMID 19368786 DOI: 10.1016/J.Vaccine.2009.02.047 |
0.716 |
|
| 2009 |
Pulliam JR, Dushoff J. Ability to replicate in the cytoplasm predicts zoonotic transmission of livestock viruses. The Journal of Infectious Diseases. 199: 565-8. PMID 19281304 DOI: 10.1086/596510 |
0.667 |
|
| 2008 |
Kryazhimskiy S, Bazykin GA, Plotkin JB, Plotkin J, Dushoff J. Directionality in the evolution of influenza A haemagglutinin. Proceedings. Biological Sciences / the Royal Society. 275: 2455-64. PMID 18647721 DOI: 10.1098/Rspb.2008.0521 |
0.743 |
|
| 2008 |
Kryazhimskiy S, Bazykin GA, Dushoff J. Natural selection for nucleotide usage at synonymous and nonsynonymous sites in influenza A virus genes. Journal of Virology. 82: 4938-45. PMID 18321967 DOI: 10.1128/Jvi.02415-07 |
0.694 |
|
| 2007 |
Lichstein JW, Dushoff J, Levin SA, Pacala SW. Intraspecific variation and species coexistence. The American Naturalist. 170: 807-18. PMID 18171164 DOI: 10.1086/522937 |
0.671 |
|
| 2007 |
Kryazhimskiy S, Dieckmann U, Levin SA, Dushoff J. On state-space reduction in multi-strain pathogen models, with an application to antigenic drift in influenza A. Plos Computational Biology. 3: e159. PMID 17708677 DOI: 10.1371/Journal.Pcbi.0030159 |
0.719 |
|
| 2007 |
Dushoff J, Plotkin JB, Viboud C, Simonsen L, Miller M, Loeb M, Earn DJ. Vaccinating to protect a vulnerable subpopulation. Plos Medicine. 4: e174. PMID 17518515 DOI: 10.1371/Journal.Pmed.0040174 |
0.559 |
|
| 2007 |
Pulliam JR, Dushoff JG, Levin SA, Dobson AP. Epidemic enhancement in partially immune populations. Plos One. 2: e165. PMID 17225866 DOI: 10.1371/Journal.Pone.0000165 |
0.717 |
|
| 2006 |
Bazykin GA, Dushoff J, Levin SA, Kondrashov AS. Bursts of nonsynonymous substitutions in HIV-1 evolution reveal instances of positive selection at conservative protein sites. Proceedings of the National Academy of Sciences of the United States of America. 103: 19396-401. PMID 17164328 DOI: 10.1073/Pnas.0609484103 |
0.393 |
|
| 2006 |
Plotkin JB, Dushoff J, Desai MM, Fraser HB. Codon usage and selection on proteins. Journal of Molecular Evolution. 63: 635-53. PMID 17043750 DOI: 10.1007/S00239-005-0233-X |
0.538 |
|
| 2006 |
Plotkin JB, Dushoff J, Desai MM, Fraser HB. Estimating selection pressures from limited comparative data. Molecular Biology and Evolution. 23: 1457-9. PMID 16754640 DOI: 10.1093/Molbev/Msl021 |
0.521 |
|
| 2006 |
Dushoff J, Plotkin JB, Viboud C, Earn DJ, Simonsen L. Mortality due to influenza in the United States--an annualized regression approach using multiple-cause mortality data. American Journal of Epidemiology. 163: 181-7. PMID 16319291 DOI: 10.1093/Aje/Kwj024 |
0.566 |
|
| 2004 |
Dushoff J, Plotkin JB, Levin SA, Earn DJ. Dynamical resonance can account for seasonality of influenza epidemics. Proceedings of the National Academy of Sciences of the United States of America. 101: 16915-6. PMID 15557003 DOI: 10.1073/Pnas.0407293101 |
0.64 |
|
| 2004 |
Plotkin JB, Dushoff J, Fraser HB. Detecting selection using a single genome sequence of M. tuberculosis and P. falciparum. Nature. 428: 942-5. PMID 15118727 DOI: 10.1038/Nature02458 |
0.507 |
|
| 2004 |
Smith DL, Dushoff J, Perencevich EN, Harris AD, Levin SA. Persistent colonization and the spread of antibiotic resistance in nosocomial pathogens: resistance is a regional problem. Proceedings of the National Academy of Sciences of the United States of America. 101: 3709-14. PMID 14985511 DOI: 10.1073/Pnas.0400456101 |
0.382 |
|
| 2004 |
Levin SA, Dushoff J, Plotkin JB. Evolution and persistence of influenza A and other diseases. Mathematical Biosciences. 188: 17-28. PMID 14766091 DOI: 10.1016/J.Mbs.2003.08.010 |
0.664 |
|
| 2003 |
Plotkin JB, Dushoff J. Codon bias and frequency-dependent selection on the hemagglutinin epitopes of influenza A virus. Proceedings of the National Academy of Sciences of the United States of America. 100: 7152-7. PMID 12748378 DOI: 10.1073/Pnas.1132114100 |
0.572 |
|
| 2002 |
Dushoff J, Worden L, Keymer J, Levin S. Metapopulations, community assembly, and scale invariance in aspect space. Theoretical Population Biology. 62: 329-38. PMID 12427456 DOI: 10.1016/S0040-5809(02)00006-0 |
0.745 |
|
| 2002 |
Plotkin JB, Dushoff J, Levin SA. Hemagglutinin sequence clusters and the antigenic evolution of influenza A virus. Proceedings of the National Academy of Sciences of the United States of America. 99: 6263-8. PMID 11972025 DOI: 10.1073/Pnas.082110799 |
0.65 |
|
| 2000 |
Dwyer G, Dushoff J, Elkinton JS, Levin SA. Pathogen-Driven Outbreaks in Forest Defoliators Revisited: Building Models from Experimental Data. The American Naturalist. 156: 105-120. PMID 10856195 DOI: 10.1086/303379 |
0.476 |
|
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