☰

Kevin P Byrne - Publications

Affiliations: 
University of Dublin, Trinity College 
Area:
genomics
Tree Info Similar researchers PubMed Report error

42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Lombardi L, Salzberg LI, Cinnéide EÓ, O'Brien C, Morio F, Turner SA, Byrne KP, Butler G. Alternative sulphur metabolism in the fungal pathogen Candida parapsilosis. Nature Communications. 15: 9190. PMID 39448588 DOI: 10.1038/s41467-024-53442-8  0.35
2024 McLaughlin RW, Hession C, Bergin S, Cosgrove A, Dowd A, Garvey N, Litovskich G, Osaigbovo E, Popa D, Thuku C, Butler G, Wolfe KH, Byrne KP. Genome sequences of two isolates of the yeast : UCD849 from soil in Ireland, and AWD from an African wild dog. Microbiology Resource Announcements. e0108123. PMID 38334401 DOI: 10.1128/mra.01081-23  0.693
2024 Heneghan PG, Ryan AP, Ó Cinnéide E, Davies J, Bracken C, Ogundipe V, Doheny M, Lenihan L, Passalaris A, Walker R, Wolfe KH, Butler G, Byrne KP. Draft genome sequence of the yeast strain UCD805, isolated from soil in Ireland. Microbiology Resource Announcements. e0107323. PMID 38315016 DOI: 10.1128/mra.01073-23  0.713
2022 Offei B, Braun-Galleani S, Venkatesh A, Casey WT, O'Connor KE, Byrne KP, Wolfe KH. Identification of genetic variants of the industrial yeast Komagataella phaffii (Pichia pastoris) that contribute to increased yields of secreted heterologous proteins. Plos Biology. 20: e3001877. PMID 36520709 DOI: 10.1371/journal.pbio.3001877  0.589
2022 Bergin SA, Allen S, Hession C, Ó Cinnéide E, Ryan A, Byrne KP, Ó Cróinín T, Wolfe KH, Butler G. Identification of European isolates of the lager yeast parent Saccharomyces eubayanus. Fems Yeast Research. 22. PMID 36473696 DOI: 10.1093/femsyr/foac053  0.655
2022 Salzberg LI, Martos AAR, Lombardi L, Jermiin LS, Blanco A, Byrne KP, Wolfe KH. A widespread inversion polymorphism conserved among Saccharomyces species is caused by recurrent homogenization of a sporulation gene family. Plos Genetics. 18: e1010525. PMID 36441813 DOI: 10.1371/journal.pgen.1010525  0.699
2022 Don A, Byrne KP, Alqaderi F, Mazhova A, O'Leary Chaney B, Redmond S, Allen S, Gao J, Ó Cinnéide E, Bergin SA, Hession C, Wolfe KH, Butler G. Draft Genome Sequence of the Yeast Blastobotrys aristata Strain UCD613, Isolated from Soil in Ireland. Microbiology Resource Announcements. e0095722. PMID 36222698 DOI: 10.1128/mra.00957-22  0.722
2022 Igharo B, Byrne KP, Ghnewa H, Davey RP, Fubara A, Welc J, Oubihi S, Moore L, Smith C, Ó Cinnéide E, Bergin SA, Hession C, Wolfe KH, Butler G. Draft Genome Sequence of the Yeast Torulaspora quercuum Strain UCD657, Isolated from Soil in Ireland. Microbiology Resource Announcements. e0095222. PMID 36214680 DOI: 10.1128/mra.00952-22  0.714
2021 Ó Cinnéide E, Jones M, Bahate E, Boyd E, Clavero R, Doherty H, Drozdz I, Dumana M, Gonzales C, Kennedy J, Khan M, Maher S, McGurk C, Moreau K, Neville R, ... ... Byrne KP, et al. Draft Genome Sequence of the Yeast Strain UCD465, Isolated from Soil in Ireland. Microbiology Resource Announcements. 10: e0073621. PMID 34591679 DOI: 10.1128/MRA.00736-21  0.699
2021 Ryan A, Ó Cinnéide E, Bergin SA, Alhajeri G, Almotawaa H, Daly I, Heneghan S, Horan K, Kavanagh R, Keane C, Martin A, McDonagh A, O'Leary J, Osborne M, Watson E, ... Byrne KP, et al. Draft Genome Sequence of a Diploid and Hybrid Strain, UCD423, Isolated from Compost in Ireland. Microbiology Resource Announcements. 10: e0076121. PMID 34553994 DOI: 10.1128/MRA.00761-21  0.724
2020 Coughlan AY, Lombardi L, Braun-Galleani S, Martos AA, Galeote V, Bigey F, Dequin S, Byrne KP, Wolfe KH. The yeast mating-type switching endonuclease HO is a domesticated member of an unorthodox homing genetic element family. Elife. 9. PMID 32338594 DOI: 10.7554/Elife.55336  0.615
2019 Braun-Galleani S, Dias JA, Coughlan AY, Ryan AP, Byrne KP, Wolfe KH. Genomic diversity and meiotic recombination among isolates of the biotech yeast Komagataella phaffii (Pichia pastoris). Microbial Cell Factories. 18: 211. PMID 31801527 DOI: 10.1186/S12934-019-1260-4  0.659
2019 Heneghan P, Ryan AP, Nimmo D, Duggan C, Kumar P, O'Gaora P, Ó 'Cinnéide E, Byrne KP, Wolfe KH, O'Brien CE, Butler G. Draft Genome Sequence of the Birch Tree Fungal Pathogen Taphrina betulina UCD315. Microbiology Resource Announcements. 8. PMID 31776224 DOI: 10.1128/MRA.01255-19  0.723
2019 Faherty L, Lewis C, McElheron M, Garvey N, Duggan R, Shovlin B, Ó Cróinín T, Byrne KP, O'Brien CE, Wolfe KH, Butler G. Draft Genome Sequences of Two Isolates of the Yeast Kazachstania servazzii Recovered from Soil in Ireland. Microbiology Resource Announcements. 8. PMID 31672753 DOI: 10.1128/MRA.01257-19  0.715
2019 Almasoud J, McArdle L, Henne R, Mathews K, O'Connor Í, McLoughlin LE, Ó'Gaora P, Byrne KP, O'Brien CE, Wolfe KH, Butler G. Draft Genome Sequence of a Red Basidiomycete Yeast, Symmetrospora coprosmae Strain UCD350, Isolated from Soil in Ireland. Microbiology Resource Announcements. 8. PMID 31672752 DOI: 10.1128/MRA.01256-19  0.696
2019 Douglass AP, Byrne KP, Wolfe KH. The Methylotroph Gene Order Browser (MGOB) reveals conserved synteny and ancestral centromere locations in the yeast family Pichiaceae. Fems Yeast Research. PMID 31397853 DOI: 10.1093/Femsyr/Foz058  0.719
2019 Palmer-Brown W, Miranda-CasoLuengo R, Wolfe KH, Byrne KP, Murphy CD. The CYPome of the model xenobiotic-biotransforming fungus Cunninghamella elegans. Scientific Reports. 9: 9240. PMID 31239505 DOI: 10.1038/S41598-019-45706-X  0.619
2019 Douglass AP, O'Brien CE, Offei B, Coughlan AY, Ortiz-Merino RA, Butler G, Byrne KP, Wolfe KH. Coverage-Versus-Length Plots, a Simple Quality Control Step for Yeast Genome Sequence Assemblies. G3 (Bethesda, Md.). PMID 30674538 DOI: 10.1534/G3.118.200745  0.701
2018 McGowan J, Byrne KP, Fitzpatrick DA. Comparative Analysis of Oomycete Genome Evolution using the Oomycete Gene Order Browser (OGOB). Genome Biology and Evolution. PMID 30535146 DOI: 10.1093/gbe/evy267  0.622
2018 Douglass AP, Offei B, Braun-Galleani S, Coughlan AY, Martos AAR, Ortiz-Merino RA, Byrne KP, Wolfe KH. Population genomics shows no distinction between pathogenic Candida krusei and environmental Pichia kudriavzevii: One species, four names. Plos Pathogens. 14: e1007138. PMID 30024981 DOI: 10.1371/Journal.Ppat.1007138  0.72
2018 O'Boyle S, Bergin SA, Hussey ÉE, McLaughlin AD, Riddell LR, Byrne KP, Wolfe KH, O'Brien CE, Butler G. Draft Genome Sequence of the Yeast Nadsonia starkeyi-henricii UCD142, Isolated from Forest Soil in Ireland. Genome Announcements. 6. PMID 29930058 DOI: 10.1128/Genomea.00549-18  0.718
2017 Ortiz-Merino RA, Kuanyshev N, Byrne KP, Varela JA, Morrissey JP, Porro D, Wolfe KH, Branduardi P. Transcriptional response to lactic acid stress in the hybrid yeast Zygosaccharomyces parabailii. Applied and Environmental Microbiology. PMID 29269498 DOI: 10.1128/Aem.02294-17  0.629
2017 Hanson SJ, Byrne KP, Wolfe KH. Flip/flop mating-type switching in the methylotrophic yeast Ogataea polymorpha is regulated by an Efg1-Rme1-Ste12 pathway. Plos Genetics. 13: e1007092. PMID 29176810 DOI: 10.1371/Journal.Pgen.1007092  0.601
2017 Ortiz-Merino RA, Kuanyshev N, Braun-Galleani S, Byrne KP, Porro D, Branduardi P, Wolfe KH. Evolutionary restoration of fertility in an interspecies hybrid yeast, by whole-genome duplication after a failed mating-type switch. Plos Biology. 15: e2002128. PMID 28510588 DOI: 10.1371/Journal.Pbio.2002128  0.702
2016 Coughlan AY, Hanson SJ, Byrne KP, Wolfe KH. Centromeres of the yeast Komagataella phaffii (Pichia pastoris) have a simple inverted-repeat structure. Genome Biology and Evolution. PMID 27497317 DOI: 10.1093/Gbe/Evw178  0.614
2015 Wolfe KH, Armisén D, Proux-Wera E, ÓhÉigeartaigh SS, Azam H, Gordon JL, Byrne KP. Clade- and species-specific features of genome evolution in the Saccharomycetaceae. Fems Yeast Research. 15. PMID 26066552 DOI: 10.1093/Femsyr/Fov035  0.828
2014 Hanson SJ, Byrne KP, Wolfe KH. Mating-type switching by chromosomal inversion in methylotrophic yeasts suggests an origin for the three-locus Saccharomyces cerevisiae system. Proceedings of the National Academy of Sciences of the United States of America. 111: E4851-8. PMID 25349420 DOI: 10.1073/Pnas.1416014111  0.678
2014 Óhéigeartaigh SS, Armisén D, Byrne KP, Wolfe KH. SearchDOGS bacteria, software that provides automated identification of potentially missed genes in annotated bacterial genomes. Journal of Bacteriology. 196: 2030-42. PMID 24659774 DOI: 10.1128/Jb.01368-13  0.739
2013 Maguire SL, ÓhÉigeartaigh SS, Byrne KP, Schröder MS, O'Gaora P, Wolfe KH, Butler G. Comparative genome analysis and gene finding in Candida species using CGOB. Molecular Biology and Evolution. 30: 1281-91. PMID 23486613 DOI: 10.1093/Molbev/Mst042  0.736
2013 Proux-Wéra E, Byrne KP, Wolfe KH. Evolutionary mobility of the ribosomal DNA array in yeasts. Genome Biology and Evolution. 5: 525-31. PMID 23419706 DOI: 10.1093/Gbe/Evt022  0.799
2012 Proux-Wéra E, Armisén D, Byrne KP, Wolfe KH. A pipeline for automated annotation of yeast genome sequences by a conserved-synteny approach. Bmc Bioinformatics. 13: 237. PMID 22984983 DOI: 10.1186/1471-2105-13-237  0.827
2011 Gordon JL, Armisén D, Proux-Wéra E, ÓhÉigeartaigh SS, Byrne KP, Wolfe KH. Evolutionary erosion of yeast sex chromosomes by mating-type switching accidents. Proceedings of the National Academy of Sciences of the United States of America. 108: 20024-9. PMID 22123960 DOI: 10.1073/Pnas.1112808108  0.812
2011 Gordon JL, Byrne KP, Wolfe KH. Mechanisms of chromosome number evolution in yeast. Plos Genetics. 7: e1002190. PMID 21811419 DOI: 10.1371/Journal.Pgen.1002190  0.645
2011 OhÉigeartaigh SS, Armisén D, Byrne KP, Wolfe KH. Systematic discovery of unannotated genes in 11 yeast species using a database of orthologous genomic segments. Bmc Genomics. 12: 377. PMID 21791067 DOI: 10.1186/1471-2164-12-377  0.751
2010 Fitzpatrick DA, O'Gaora P, Byrne KP, Butler G. Analysis of gene evolution and metabolic pathways using the Candida Gene Order Browser. Bmc Genomics. 11: 290. PMID 20459735 DOI: 10.1186/1471-2164-11-290  0.626
2009 Gordon JL, Byrne KP, Wolfe KH. Additions, losses, and rearrangements on the evolutionary route from a reconstructed ancestor to the modern Saccharomyces cerevisiae genome. Plos Genetics. 5: e1000485. PMID 19436716 DOI: 10.1371/Journal.Pgen.1000485  0.768
2007 Scannell DR, Frank AC, Conant GC, Byrne KP, Woolfit M, Wolfe KH. Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication. Proceedings of the National Academy of Sciences of the United States of America. 104: 8397-402. PMID 17494770 DOI: 10.1073/Pnas.0608218104  0.801
2007 Byrne KP, Wolfe KH. Consistent patterns of rate asymmetry and gene loss indicate widespread neofunctionalization of yeast genes after whole-genome duplication. Genetics. 175: 1341-50. PMID 17194778 DOI: 10.1534/Genetics.106.066951  0.735
2006 Scannell DR, Byrne KP, Gordon JL, Wong S, Wolfe KH. Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts. Nature. 440: 341-5. PMID 16541074 DOI: 10.1038/Nature04562  0.716
2006 Byrne KP, Wolfe KH. Visualizing syntenic relationships among the hemiascomycetes with the Yeast Gene Order Browser. Nucleic Acids Research. 34: D452-5. PMID 16381909 DOI: 10.1093/Nar/Gkj041  0.745
2006 Fares MA, Byrne KP, Wolfe KH. Rate asymmetry after genome duplication causes substantial long-branch attraction artifacts in the phylogeny of Saccharomyces species. Molecular Biology and Evolution. 23: 245-53. PMID 16207937 DOI: 10.1093/Molbev/Msj027  0.776
2005 Byrne KP, Wolfe KH. The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species. Genome Research. 15: 1456-61. PMID 16169922 DOI: 10.1101/Gr.3672305  0.746
Show low-probability matches.