| Year |
Citation |
Score |
| 2017 |
Cingolani G, Panella A, Perrone MG, Vitale P, Di Mauro G, Fortuna CG, Armen RS, Ferorelli S, Smith WL, Scilimati A. Structural basis for selective inhibition of Cyclooxygenase-1 (COX-1) by diarylisoxazoles mofezolac and 3-(5-chlorofuran-2-yl)-5-methyl-4-phenylisoxazole (P6). European Journal of Medicinal Chemistry. 138: 661-668. PMID 28710965 DOI: 10.1016/J.Ejmech.2017.06.045 |
0.305 |
|
| 2013 |
Schumann M, Armen RS. Identification of distant drug off-targets by direct superposition of binding pocket surfaces Plos One. 8. PMID 24391782 DOI: 10.1371/Journal.Pone.0083533 |
0.315 |
|
| 2013 |
Schumann M, Armen RS. Systematic and efficient side chain optimization for molecular docking using a cheapest-path procedure Journal of Computational Chemistry. 34: 1258-1269. PMID 23420703 DOI: 10.1002/Jcc.23251 |
0.316 |
|
| 2012 |
Estrada T, Zhang B, Cicotti P, Armen RS, Taufer M. A scalable and accurate method for classifying protein-ligand binding geometries using a MapReduce approach Computers in Biology and Medicine. 42: 758-771. PMID 22658682 DOI: 10.1016/J.Compbiomed.2012.05.001 |
0.333 |
|
| 2011 |
Rahaman O, Estrada TP, Doren DJ, Taufer M, Brooks CL, Armen RS. Evaluation of several two-step scoring functions based on linear interaction energy, effective ligand size, and empirical pair potentials for prediction of protein-ligand binding geometry and free energy. Journal of Chemical Information and Modeling. 51: 2047-65. PMID 21644546 DOI: 10.1021/Ci1003009 |
0.31 |
|
| 2010 |
May ER, Armen RS, Mannan AM, Brooks CL. The flexible C-terminal arm of the Lassa arenavirus Z-protein mediates interactions with multiple binding partners Proteins: Structure, Function and Bioinformatics. 78: 2251-2264. PMID 20544962 DOI: 10.1002/Prot.22738 |
0.386 |
|
| 2010 |
Armen RS, Schiller SM, Brooks CL. Steric and thermodynamic limits of design for the incorporation of large unnatural amino acids in aminoacyl-tRNA synthetase enzymes Proteins: Structure, Function and Bioinformatics. 78: 1926-1938. PMID 20310065 DOI: 10.1002/Prot.22706 |
0.335 |
|
| 2009 |
Armen RS, Chen J, Brooks CL. An Evaluation of Explicit Receptor Flexibility in Molecular Docking Using Molecular Dynamics and Torsion Angle Molecular Dynamics. Journal of Chemical Theory and Computation. 5: 2909-2923. PMID 20160879 DOI: 10.1021/Ct900262T |
0.337 |
|
| 2008 |
Steward RE, Armen RS, Daggett V. Different disease-causing mutations in transthyretin trigger the same conformational conversion. Protein Engineering, Design & Selection : Peds. 21: 187-95. PMID 18276611 DOI: 10.1093/Protein/Gzm086 |
0.57 |
|
| 2005 |
Armen RS, Daggett V. Characterization of two distinct beta2-microglobulin unfolding intermediates that may lead to amyloid fibrils of different morphology. Biochemistry. 44: 16098-107. PMID 16331970 DOI: 10.1021/Bi050731H |
0.599 |
|
| 2005 |
Armen RS, Bernard BM, Day R, Alonso DO, Daggett V. Characterization of a possible amyloidogenic precursor in glutamine-repeat neurodegenerative diseases. Proceedings of the National Academy of Sciences of the United States of America. 102: 13433-8. PMID 16157882 DOI: 10.1073/Pnas.0502068102 |
0.595 |
|
| 2005 |
Beck DA, Armen RS, Daggett V. Cutoff size need not strongly influence molecular dynamics results for solvated polypeptides. Biochemistry. 44: 609-16. PMID 15641786 DOI: 10.1021/Bi0486381 |
0.537 |
|
| 2004 |
Armen RS, Alonso DO, Daggett V. Anatomy of an amyloidogenic intermediate: conversion of beta-sheet to alpha-sheet structure in transthyretin at acidic pH. Structure (London, England : 1993). 12: 1847-63. PMID 15458633 DOI: 10.1016/J.Str.2004.08.005 |
0.598 |
|
| 2004 |
Armen RS, DeMarco ML, Alonso DO, Daggett V. Pauling and Corey's alpha-pleated sheet structure may define the prefibrillar amyloidogenic intermediate in amyloid disease. Proceedings of the National Academy of Sciences of the United States of America. 101: 11622-7. PMID 15280548 DOI: 10.1073/Pnas.0401781101 |
0.613 |
|
| 2003 |
Day R, Beck DAC, Armen RS, Daggett V. A consensus view of fold space: Combining SCOP, CATH, and the Dali Domain Dictionary Protein Science. 12: 2150-2160. PMID 14500873 DOI: 10.1110/Ps.0306803 |
0.509 |
|
| 2003 |
Armen R, Alonso DO, Daggett V. The role of alpha-, 3(10)-, and pi-helix in helix-->coil transitions. Protein Science : a Publication of the Protein Society. 12: 1145-57. PMID 12761385 DOI: 10.1110/Ps.0240103 |
0.585 |
|
| 2000 |
Goetz DH, Willie ST, Armen RS, Bratt T, Borregaard N, Strong RK. Ligand preference inferred from the structure of neutrophil gelatinase associated lipocalin Biochemistry. 39: 1935-1941. PMID 10684642 DOI: 10.1021/Bi992215V |
0.353 |
|
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