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Alexander Platt, Ph.D. - Publications

Affiliations: 
Harvard University, Cambridge, MA, United States 
Area:
theoretical population genetics
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25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Wang D, Perera D, He J, Cao C, Kossinna P, Li Q, Zhang W, Guo X, Platt A, Wu J, Zhang Q. cLD: Rare-variant linkage disequilibrium between genomic regions identifies novel genomic interactions. Plos Genetics. 19: e1011074. PMID 38109434 DOI: 10.1371/journal.pgen.1011074  0.327
2023 Pivirotto AM, Platt A, Patel R, Kumar S, Hey J. Analyses of allele age and fitness impact reveal human beneficial alleles to be older than neutral controls. Biorxiv : the Preprint Server For Biology. PMID 37873438 DOI: 10.1101/2023.10.09.561569  0.632
2023 Harris DN, Platt A, Hansen MEB, Fan S, McQuillan MA, Nyambo T, Mpoloka SW, Mokone GG, Belay G, Fokunang C, Njamnshi AK, Tishkoff SA. Diverse African genomes reveal selection on ancient modern human introgressions in Neanderthals. Current Biology : Cb. PMID 37837965 DOI: 10.1016/j.cub.2023.09.066  0.323
2022 Puckett EE, Davis IS, Harper DC, Wakamatsu K, Battu G, Belant JL, Beyer DE, Carpenter C, Crupi AP, Davidson M, DePerno CS, Forman N, Fowler NL, Garshelis DL, Gould N, ... ... Platt A, et al. Genetic architecture and evolution of color variation in American black bears. Current Biology : Cb. PMID 36528024 DOI: 10.1016/j.cub.2022.11.042  0.389
2020 McQuillan MA, Zhang C, Tishkoff SA, Platt A. The importance of including ethnically diverse populations in studies of quantitative trait evolution. Current Opinion in Genetics & Development. 62: 30-35. PMID 32604012 DOI: 10.1016/J.Gde.2020.05.037  0.513
2019 Platt A, Pivirotto A, Knoblauch J, Hey J. An estimator of first coalescent time reveals selection on young variants and large heterogeneity in rare allele ages among human populations. Plos Genetics. 15: e1008340. PMID 31425500 DOI: 10.1371/Journal.Pgen.1008340  0.622
2018 Xiong Z, Zhang Q, Platt A, Liao W, Shi X, de Los Campos G, Long Q. OCMA: Fast, Memory-Efficient Factorization of Prohibitively Large Relationship Matrices. G3 (Bethesda, Md.). PMID 30482799 DOI: 10.1534/G3.118.200908  0.376
2018 Patel R, Scheinfeldt LB, Sanderford MD, Lanham TR, Tamura K, Platt A, Glicksberg BS, Xu K, Dudley JT, Kumar S. Adaptive landscape of protein variation in human exomes. Molecular Biology and Evolution. PMID 29846678 DOI: 10.1093/Molbev/Msy107  0.517
2018 Platt A, Weber CC, Liberles DA. Protein evolution depends on multiple distinct population size parameters. Bmc Evolutionary Biology. 18: 17. PMID 29422024 DOI: 10.1186/S12862-017-1085-X  0.441
2015 Platt A, Gugger PF, Pellegrini M, Sork VL. Genome-wide signature of local adaptation linked to variable CpG methylation in oak populations. Molecular Ecology. 24: 3823-30. PMID 25951436 DOI: 10.1111/Mec.13230  0.443
2015 Brachi B, Meyer CG, Villoutreix R, Platt A, Morton TC, Roux F, Bergelson J. Coselected genes determine adaptive variation in herbivore resistance throughout the native range of Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 112: 4032-7. PMID 25775585 DOI: 10.1073/Pnas.1421416112  0.476
2014 Yang WY, Platt A, Chiang CW, Eskin E, Novembre J, Pasaniuc B. Spatial localization of recent ancestors for admixed individuals. G3 (Bethesda, Md.). 4: 2505-18. PMID 25371484 DOI: 10.1534/G3.114.014274  0.448
2013 Lovell JT, Juenger TE, Michaels SD, Lasky JR, Platt A, Richards JH, Yu X, Easlon HM, Sen S, McKay JK. Pleiotropy of FRIGIDA enhances the potential for multivariate adaptation. Proceedings. Biological Sciences / the Royal Society. 280: 20131043. PMID 23698015 DOI: 10.1098/Rspb.2013.1043  0.446
2012 Platt A, Novembre J. A new era of human population genetics. Genome Biology. 13: 182. PMID 23268745 DOI: 10.1186/Gb-2012-13-12-182  0.466
2012 Korte A, Vilhjálmsson BJ, Segura V, Platt A, Long Q, Nordborg M. A mixed-model approach for genome-wide association studies of correlated traits in structured populations. Nature Genetics. 44: 1066-71. PMID 22902788 DOI: 10.1038/Ng.2376  0.494
2012 Segura V, Vilhjálmsson BJ, Platt A, Korte A, Seren Ãœ, Long Q, Nordborg M. An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations. Nature Genetics. 44: 825-30. PMID 22706313 DOI: 10.1038/Ng.2314  0.48
2012 Horton MW, Hancock AM, Huang YS, Toomajian C, Atwell S, Auton A, Muliyati NW, Platt A, Sperone FG, Vilhjálmsson BJ, Nordborg M, Borevitz JO, Bergelson J. Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel. Nature Genetics. 44: 212-6. PMID 22231484 DOI: 10.1038/Ng.1042  0.483
2012 Platt A, Novembre J. A new era of human population genetics Genome Biology. 182. DOI: 10.1186/gb4066  0.349
2011 Anastasio AE, Platt A, Horton M, Grotewold E, Scholl R, Borevitz JO, Nordborg M, Bergelson J. Source verification of mis-identified Arabidopsis thaliana accessions. The Plant Journal : For Cell and Molecular Biology. 67: 554-66. PMID 21481029 DOI: 10.1111/J.1365-313X.2011.04606.X  0.386
2010 Platt A, Vilhjálmsson BJ, Nordborg M. Conditions under which genome-wide association studies will be positively misleading. Genetics. 186: 1045-52. PMID 20813880 DOI: 10.1534/Genetics.110.121665  0.466
2010 Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, et al. Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature. 465: 627-31. PMID 20336072 DOI: 10.1038/Nature08800  0.504
2010 Platt A, Horton M, Huang YS, Li Y, Anastasio AE, Mulyati NW, Agren J, Bossdorf O, Byers D, Donohue K, Dunning M, Holub EB, Hudson A, Le Corre V, Loudet O, et al. The scale of population structure in Arabidopsis thaliana. Plos Genetics. 6: e1000843. PMID 20169178 DOI: 10.1371/Journal.Pgen.1000843  0.453
2007 Platt A. Association mapping through heuristic evolutionary history reconstruction-application to GAW15 Problem 3. Bmc Proceedings. 1: S131. PMID 18466474 DOI: 10.1186/1753-6561-1-S1-S131  0.398
2007 Ziegler A, DeStefano AL, König IR, Bardel C, Brinza D, Bull S, Cai Z, Glaser B, Jiang W, Lee KE, Li CX, Li J, Li X, Majoram P, Meng Y, ... ... Platt A, et al. Data mining, neural nets, trees--problems 2 and 3 of Genetic Analysis Workshop 15. Genetic Epidemiology. 31: S51-60. PMID 18046765 DOI: 10.1002/Gepi.20280  0.404
2007 de Andrade M, Allen AS, Brinza D, Cheng R, Da Y, de Vries AR, Ewhida A, Feng Z, Jung H, Hsieh HJ, Köhler K, Liu Y, Liu-Mares W, Luan J, Marquard V, ... ... Platt A, et al. Summary of contributions to GAW15 Group 13: candidate gene association studies. Genetic Epidemiology. 31: S110-7. PMID 18046754 DOI: 10.1002/gepi.20287  0.33
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