Deborah Dean - Publications

Affiliations: 
University of California, Berkeley, Berkeley, CA, United States 
Area:
Biomedical Engineering, Pathology, Microbiology Biology

68 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Srimongkol G, Ditmangklo B, Choopara I, Thaniyavarn J, Dean D, Kokpol S, Vilaivan T, Somboonna N. Rapid colorimetric loop-mediated isothermal amplification for hypersensitive point-of-care Staphylococcus aureus enterotoxin A gene detection in milk and pork products. Scientific Reports. 10: 7768. PMID 32385390 DOI: 10.1038/S41598-020-64710-0  0.309
2020 Svigals V, Blair A, Muller S, Sahu Khan A, Faktaufon D, Kama M, Tamani T, Esfandiari L, O'Brien M, Dean D. Hyperendemic Chlamydia trachomatis sexually transmitted infections among females represent a high burden of asymptomatic disease and health disparity among Pacific Islanders in Fiji. Plos Neglected Tropical Diseases. 14: e0008022. PMID 31971951 DOI: 10.1371/Journal.Pntd.0008022  0.327
2019 Dean D, Ziklo N, Somboonna N, Suh JH, Ferrin T. Reply to Rockey et al., "Genomics and Chlamydial Persistence ". Mbio. 10. PMID 31848290 DOI: 10.1128/Mbio.02957-19  0.328
2019 Somboonna N, Ziklo N, Ferrin TE, Hyuk Suh J, Dean D. Clinical Persistence of Chlamydia trachomatis Sexually Transmitted Strains Involves Novel Mutations in the Functional αββα Tetramer of the Tryptophan Synthase Operon. Mbio. 10. PMID 31311884 DOI: 10.1128/Mbio.01464-19  0.4
2019 Jolly AL, Rau S, Chadha AK, Abdulraheem EA, Dean D. Stromal Fibroblasts Drive Host Inflammatory Responses That Are Dependent on Chlamydia trachomatis Strain Type and Likely Influence Disease Outcomes. Mbio. 10. PMID 30890604 DOI: 10.1128/Mbio.00225-19  0.377
2018 Somboonna N, Choopara I, Arunrut N, Sukhonpan K, Sayasathid J, Dean D, Kiatpathomchai W. Rapid and sensitive detection of Chlamydia trachomatis sexually transmitted infections in resource-constrained settings in Thailand at the point-of-care. Plos Neglected Tropical Diseases. 12: e0006900. PMID 30571705 DOI: 10.1371/Journal.Pntd.0006900  0.384
2018 Marti H, Borel N, Dean D, Leonard CA. Evaluating the Antibiotic Susceptibility of - New Approaches for Assays. Frontiers in Microbiology. 9: 1414. PMID 30018602 DOI: 10.3389/Fmicb.2018.01414  0.343
2017 Smelov V, Vrbanac A, van Ess EF, Noz MP, Wan R, Eklund C, Morgan T, Shrier LA, Sanders B, Dillner J, de Vries HJC, Morre SA, Dean D. Chlamydia trachomatis Strain Types Have Diversified Regionally and Globally with Evidence for Recombination across Geographic Divides. Frontiers in Microbiology. 8: 2195. PMID 29180986 DOI: 10.3389/Fmicb.2017.02195  0.337
2017 Sharma M, Recuero-Checa MA, Fan FY, Dean D. Chlamydia trachomatis regulates growth and development in response to host cell fatty acid availability in the absence of lipid droplets. Cellular Microbiology. PMID 29117636 DOI: 10.1111/Cmi.12801  0.3
2017 Turingan RS, Kaplun L, Krautz-Peterson G, Norsworthy S, Zolotova A, Joseph SJ, Read TD, Dean D, Tan E, Selden RF. Rapid detection and strain typing of Chlamydia trachomatis using a highly multiplexed microfluidic PCR assay. Plos One. 12: e0178653. PMID 28562672 DOI: 10.1371/Journal.Pone.0178653  0.392
2017 Diaz MH, Desai HP, Morrison SS, Benitez AJ, Wolff BJ, Caravas J, Read TD, Dean D, Winchell JM. Comprehensive bioinformatics analysis of Mycoplasma pneumoniae genomes to investigate underlying population structure and type-specific determinants. Plos One. 12: e0174701. PMID 28410368 DOI: 10.1371/Journal.Pone.0174701  0.311
2017 Marti H, Kim H, Joseph SJ, Dojiri S, Read TD, Dean D. Tet(C) Gene Transfer between Chlamydia suis Strains Occurs by Homologous Recombination after Co-infection: Implications for Spread of Tetracycline-Resistance among Chlamydiaceae. Frontiers in Microbiology. 8: 156. PMID 28223970 DOI: 10.3389/Fmicb.2017.00156  0.405
2016 Choopara I, Arunrut N, Kiatpathomchai W, Dean D, Somboonna N. Rapid and Visual Chlamydia trachomatis Detection using Loop-Mediated Isothermal Amplification and Hydroxynaphthal Blue. Letters in Applied Microbiology. PMID 27689353 DOI: 10.1111/Lam.12675  0.343
2016 Joseph SJ, Cox D, Wolff B, Morrison SS, Kozak-Muiznieks NA, Frace M, Didelot X, Castillo-Ramirez S, Winchell J, Read TD, Dean D. Dynamics of genome change among Legionella species. Scientific Reports. 6: 33442. PMID 27633769 DOI: 10.1038/Srep33442  0.346
2016 Joseph SJ, Marti H, Didelot X, Read TD, Dean D. Tetracycline Selective Pressure and Homologous Recombination Shape the Evolution of Chlamydia suis: A Recently Identified Zoonotic Pathogen. Genome Biology and Evolution. 8: 2613-2623. PMID 27576537 DOI: 10.1093/Gbe/Evw182  0.403
2015 Joseph SJ, Marti H, Didelot X, Castillo-Ramirez S, Read TD, Dean D. Chlamydiaceae Genomics Reveals Interspecies Admixture and the Recent Evolution of Chlamydia abortus Infecting Lower Mammalian Species and Humans. Genome Biology and Evolution. 7: 3070-84. PMID 26507799 DOI: 10.1093/Gbe/Evv201  0.399
2015 Wolff BJ, Morrison SS, Pesti D, Ganakammal SR, Srinivasamoorthy G, Changayil S, Weil MR, MacCannell D, Rowe L, Frace M, Ritchie BW, Dean D, Winchell J. Chlamydia psittaci Comparative Genomics Reveals Intraspecies Variations in the Putative Outer Membrane and Type III Secretion System Genes. Microbiology (Reading, England). PMID 25887617 DOI: 10.1099/Mic.0.000097  0.416
2015 Ezewudo MN, Joseph SJ, Castillo-Ramirez S, Dean D, Del Rio C, Didelot X, Dillon JA, Selden RF, Shafer WM, Turingan RS, Unemo M, Read TD. Population structure of Neisseria gonorrhoeae based on whole genome data and its relationship with antibiotic resistance. Peerj. 3: e806. PMID 25780762 DOI: 10.7717/Peerj.806  0.336
2014 Batteiger BE, Wan R, Williams JA, He L, Ma A, Fortenberry JD, Dean D. Novel Chlamydia trachomatis strains in heterosexual sex partners, Indianapolis, Indiana, USA. Emerging Infectious Diseases. 20: 1841-7. PMID 25340463 DOI: 10.3201/2011.140604  0.4
2014 Joseph SJ, Li B, Ghonasgi T, Haase CP, Qin ZS, Dean D, Read TD. Direct amplification, sequencing and profiling of Chlamydia trachomatis strains in single and mixed infection clinical samples. Plos One. 9: e99290. PMID 24971628 DOI: 10.1371/Journal.Pone.0099290  0.39
2014 Al-Kuhlani M, Rothchild J, Pal S, de la Maza LM, Ouburg S, Morré SA, Dean D, Ojcius DM. TRAIL-R1 is a negative regulator of pro-inflammatory responses and modulates long-term sequelae resulting from Chlamydia trachomatis infections in humans. Plos One. 9: e93939. PMID 24695582 DOI: 10.1371/Journal.Pone.0093939  0.321
2013 Dean D, Rothschild J, Ruettger A, Kandel RP, Sachse K. Zoonotic Chlamydiaceae species associated with trachoma, Nepal. Emerging Infectious Diseases. 19: 1948-1955. PMID 24274654 DOI: 10.3201/Eid1912.130656  0.366
2013 Read TD, Joseph SJ, Didelot X, Liang B, Patel L, Dean D. Comparative analysis of Chlamydia psittaci genomes reveals the recent emergence of a pathogenic lineage with a broad host range. Mbio. 4. PMID 23532978 DOI: 10.1128/Mbio.00604-12  0.406
2013 Wang A, Al-Kuhlani M, Johnston SC, Ojcius DM, Chou J, Dean D. Transcription factor complex AP-1 mediates inflammation initiated by Chlamydia pneumoniae infection. Cellular Microbiology. 15: 779-94. PMID 23163821 DOI: 10.1111/Cmi.12071  0.338
2012 Joseph SJ, Didelot X, Rothschild J, de Vries HJ, Morré SA, Read TD, Dean D. Population genomics of Chlamydia trachomatis: insights on drift, selection, recombination, and population structure. Molecular Biology and Evolution. 29: 3933-46. PMID 22891032 DOI: 10.1093/Molbev/Mss198  0.428
2012 Bhattarai SR, Yoo SY, Lee SW, Dean D. Engineered phage-based therapeutic materials inhibit Chlamydia trachomatis intracellular infection. Biomaterials. 33: 5166-74. PMID 22494890 DOI: 10.1016/J.Biomaterials.2012.03.054  0.336
2012 Srinivasan T, Bruno WJ, Wan R, Yen A, Duong J, Dean D. In vitro recombinants of antibiotic-resistant Chlamydia trachomatis strains have statistically more breakpoints than clinical recombinants for the same sequenced loci and exhibit selection at unexpected loci. Journal of Bacteriology. 194: 617-26. PMID 22123249 DOI: 10.1128/Jb.06268-11  0.368
2011 Joseph SJ, Didelot X, Gandhi K, Dean D, Read TD. Interplay of recombination and selection in the genomes of Chlamydia trachomatis Biology Direct. 6. PMID 21615910 DOI: 10.1186/1745-6150-6-28  0.365
2011 Somboonna N, Wan R, Ojcius DM, Pettengill MA, Joseph SJ, Chang A, Hsu R, Read TD, Dean D. Hypervirulent Chlamydia trachomatis clinical strain is a recombinant between lymphogranuloma venereum (L(2)) and D lineages. Mbio. 2: e00045-11. PMID 21540364 DOI: 10.1128/Mbio.00045-11  0.398
2010 Atik B, Johnston SC, Dean D. Association of Carotid Plaque Lp-PLA2 with Macrophages and Chlamydia pneumoniae infection among Patients at Risk for Stroke Plos One. 5. PMID 20543948 DOI: 10.1371/Journal.Pone.0011026  0.301
2010 Skwor T, Kandel RP, Basravi S, Khan A, Sharma B, Dean D. Characterization of Humoral Immune Responses to Chlamydial HSP60, CPAF, and CT795 in Inflammatory and Severe Trachoma Investigative Ophthalmology & Visual Science. 51: 5128-5136. PMID 20463311 DOI: 10.1167/Iovs.09-5113  0.34
2009 Dean D, Bruno WJ, Wan R, Gomes JP, Devignot S, Mehari T, de Vries HJ, Morré SA, Myers G, Read TD, Spratt BG. Predicting phenotype and emerging strains among Chlamydia trachomatis infections. Emerging Infectious Diseases. 15: 1385-94. PMID 19788805 DOI: 10.3201/Eid1509.090272  0.411
2009 Tan C, Hsia RC, Shou H, Haggerty CL, Ness RB, Gaydos CA, Dean D, Scurlock AM, Wilson DP, Bavoil PM. Chlamydia trachomatis-infected patients display variable antibody profiles against the nine-member polymorphic membrane protein family. Infection and Immunity. 77: 3218-26. PMID 19487469 DOI: 10.1128/Iai.01566-08  0.401
2008 Atik B, Skwor TA, Kandel RP, Sharma B, Adhikari HK, Steiner L, Erlich H, Dean D. Identification of novel single nucleotide polymorphisms in inflammatory genes as risk factors associated with trachomatous trichiasis. Plos One. 3: e3600. PMID 18974840 DOI: 10.1371/Journal.Pone.0003600  0.308
2008 Skwor TA, Atik B, Kandel RP, Adhikari HK, Sharma B, Dean D. Role of secreted conjunctival mucosal cytokine and chemokine proteins in different stages of trachomatous disease. Plos Neglected Tropical Diseases. 2: e264. PMID 18628987 DOI: 10.1371/Journal.Pntd.0000264  0.329
2008 Somboonna N, Mead S, Liu J, Dean D. Discovering and differentiating new and emerging clonal populations of Chlamydia trachomatis with a novel shotgun cell culture harvest assay. Emerging Infectious Diseases. 14: 445-53. PMID 18325260 DOI: 10.3201/Eid1403.071071  0.435
2008 Dean D, Kandel RP, Adhikari HK, Hessel T. Multiple Chlamydiaceae species in trachoma: implications for disease pathogenesis and control. Plos Medicine. 5: e14. PMID 18177205 DOI: 10.1371/Journal.Pmed.0050014  0.385
2007 Nunes A, Gomes JP, Mead S, Florindo C, Correia H, Borrego MJ, Dean D. Comparative expression profiling of the Chlamydia trachomatis pmp gene family for clinical and reference strains. Plos One. 2: e878. PMID 17849007 DOI: 10.1371/Journal.Pone.0000878  0.358
2007 Liu Z, Rank R, Kaltenboeck B, Magnino S, Dean D, Burall L, Plaut RD, Read TD, Myers G, Bavoil PM. Genomic plasticity of the rrn-nqrF intergenic segment in the Chlamydiaceae. Journal of Bacteriology. 189: 2128-32. PMID 17158668 DOI: 10.1128/Jb.00378-06  0.315
2007 Gomes JP, Bruno WJ, Nunes A, Santos N, Florindo C, Borrego MJ, Dean D. Evolution of Chlamydia trachomatis diversity occurs by widespread interstrain recombination involving hotspots. Genome Research. 17: 50-60. PMID 17090662 DOI: 10.1101/Gr.5674706  0.396
2006 Atik B, Thanh TTK, Luong VQ, Lagree S, Dean D. Impact of Annual Targeted Treatment on Infectious Trachoma and Susceptibility to Reinfection Jama. 296: 1488-1497. PMID 17003397 DOI: 10.1001/Jama.296.12.1488  0.336
2006 Millman K, Black CM, Stamm WE, Jones RB, Hook EW, Martin DH, Bolan G, Tavaré S, Dean D. Population-based genetic epidemiologic analysis of Chlamydia trachomatis serotypes and lack of association between ompA polymorphisms and clinical phenotypes. Microbes and Infection / Institut Pasteur. 8: 604-11. PMID 16527508 DOI: 10.1016/J.Micinf.2005.08.012  0.388
2006 Gomes JP, Nunes A, Bruno WJ, Borrego MJ, Florindo C, Dean D. Polymorphisms in the nine polymorphic membrane proteins of Chlamydia trachomatis across all serovars: evidence for serovar Da recombination and correlation with tissue tropism. Journal of Bacteriology. 188: 275-86. PMID 16352844 DOI: 10.1128/Jb.188.1.275-286.2006  0.352
2006 Gomes JP, Borrego MJ, Atik B, Santo I, Azevedo J, Brito de Sá A, Nogueira P, Dean D. Correlating Chlamydia trachomatis infectious load with urogenital ecological success and disease pathogenesis. Microbes and Infection / Institut Pasteur. 8: 16-26. PMID 16289001 DOI: 10.1016/J.Micinf.2005.05.014  0.331
2005 Hsieh JC, Tham DM, Feng W, Huang F, Embaie S, Liu K, Dean D, Hertle R, Fitzgerald DJ, Mrsny RJ. Intranasal immunization strategy to impede pilin-mediated binding of Pseudomonas aeruginosa to airway epithelial cells. Infection and Immunity. 73: 7705-17. PMID 16239575 DOI: 10.1128/Iai.73.11.7705-7717.2005  0.332
2005 Gomes JP, Hsia RC, Mead S, Borrego MJ, Dean D. Immunoreactivity and differential developmental expression of known and putative Chlamydia trachomatis membrane proteins for biologically variant serovars representing distinct disease groups. Microbes and Infection / Institut Pasteur. 7: 410-20. PMID 15784185 DOI: 10.1016/J.Micinf.2004.11.014  0.352
2004 Gomes JP, Bruno WJ, Borrego MJ, Dean D. Recombination in the genome of Chlamydia trachomatis involving the polymorphic membrane protein C gene relative to ompA and evidence for horizontal gene transfer. Journal of Bacteriology. 186: 4295-306. PMID 15205432 DOI: 10.1128/Jb.186.13.4295-4306.2004  0.397
2004 Millman K, Black CM, Johnson RE, Stamm WE, Jones RB, Hook EW, Martin DH, Bolan G, Tavaré S, Dean D. Population-based genetic and evolutionary analysis of Chlamydia trachomatis urogenital strain variation in the United States. Journal of Bacteriology. 186: 2457-65. PMID 15060049 DOI: 10.1128/Jb.186.8.2457-2465.2004  0.339
2004 Shrier LA, Dean D, Klein E, Harter K, Rice PA. Limitations of screening tests for the detection of Chlamydia trachomatis in asymptomatic adolescent and young adult women. American Journal of Obstetrics and Gynecology. 190: 654-62. PMID 15041995 DOI: 10.1016/J.Ajog.2003.09.063  0.306
2004 Shrier LA, Dean D, Klein E, Harter K, Rice PA. Limitations of screening tests for the detection of Chlamydia trachomatis in asymptomatic adolescent and young adult women Obstetrical & Gynecological Survey. 59: 513-515. DOI: 10.1097/00006254-200407000-00015  0.322
2002 Johnston SC, Messina LM, Browner WS, Lawton MT, Morris C, Dean D. C-reactive protein levels and viable Chlamydia pneumoniae in carotid artery atherosclerosis. Stroke. 32: 2748-52. PMID 11739967 DOI: 10.1161/Hs1201.099631  0.311
2001 Millman KL, Tavaré S, Dean D. Recombination in the ompA gene but not the omcB gene of Chlamydia contributes to serovar-specific differences in tissue tropism, immune surveillance, and persistence of the organism. Journal of Bacteriology. 183: 5997-6008. PMID 11567000 DOI: 10.1128/Jb.183.20.5997-6008.2001  0.398
2001 Dean D, Powers VC. Persistent Chlamydia trachomatis infections resist apoptotic stimuli Infection and Immunity. 69: 2442-2447. PMID 11254605 DOI: 10.1128/Iai.69.4.2442-2447.2001  0.372
2000 Dean D, Suchland RJ, Stamm WE. Evidence for Long-Term Cervical Persistence of Chlamydia trachomatis by omp1 Genotyping The Journal of Infectious Diseases. 182: 909-916. PMID 10950788 DOI: 10.1086/315778  0.354
1999 Dean D. Genotyping Chlamydia trachomatis by PCR Methods in Molecular Medicine. 20: 151-170. PMID 21390734 DOI: 10.1385/0-89603-535-2:151  0.389
1999 Knox CM, Cevallos V, Margolis TP, Dean D. Identification of bacterial pathogens in patients with endophthalmitis by 16S ribosomal DNA typing. American Journal of Ophthalmology. 128: 511-512. PMID 10577597 DOI: 10.1016/S0002-9394(99)00181-6  0.327
1998 Knox CM, Cevellos V, Dean D. 16S Ribosomal DNA Typing for Identification of Pathogens in Patients with Bacterial Keratitis Journal of Clinical Microbiology. 36: 3492-3496. PMID 9817860 DOI: 10.1128/Jcm.36.12.3492-3496.1998  0.329
1998 Lin JS, Donegan SP, Heeren TC, Greenberg M, Flaherty EE, Haivanis R, Su XH, Dean D, Newhall WJ, Knapp JS, Sarafian SK, Rice RJ, Morse SA, Rice PA. Transmission of Chlamydia trachomatis and Neisseria gonorrhoeae among men with urethritis and their female sex partners. The Journal of Infectious Diseases. 178: 1707-12. PMID 9815223 DOI: 10.1086/314485  0.314
1998 Lietman T, Brooks D, Moncada J, Schachter J, Dawson C, Dean D. Chronic Follicular Conjunctivitis Associated with Chlamydia psittaci or Chlamydia pneumoniae Clinical Infectious Diseases. 26: 1335-1340. PMID 9636859 DOI: 10.1086/516373  0.384
1998 Chu KM, Rathinam R, Namperumalsamy P, Dean D. Identification of Leptospira species in the pathogenesis of uveitis and determination of clinical ocular characteristics in South India The Journal of Infectious Diseases. 177: 1314-1321. PMID 9593018 DOI: 10.1086/515273  0.303
1998 Molestina RE, Dean D, Miller RD, Ramirez JA, Summersgill JT. Characterization of a Strain of Chlamydia pneumoniae Isolated from a Coronary Atheroma by Analysis of the omp1 Gene and Biological Activity in Human Endothelial Cells Infection and Immunity. 66: 1370-1376. PMID 9529055 DOI: 10.1128/Iai.66.4.1370-1376.1998  0.407
1998 Dean D, Ferrero D, McCarthy M. Comparison of Performance and Cost-Effectiveness of Direct Fluorescent-Antibody, Ligase Chain Reaction, and PCR Assays for Verification of Chlamydial Enzyme Immunoassay Results for Populations with a Low to Moderate Prevalence of Chlamydia trachomatis Infection Journal of Clinical Microbiology. 36: 94-99. PMID 9431928 DOI: 10.1128/Jcm.36.1.94-99.1998  0.3
1997 Dean D, Millman K. Molecular and mutation trends analyses of omp1 alleles for serovar E of Chlamydia trachomatis. Implications for the immunopathogenesis of disease. Journal of Clinical Investigation. 99: 475-483. PMID 9022081 DOI: 10.1172/Jci119182  0.337
1995 Dean D, Shama A, Schachter J, Dawson CR. Molecular identification of an avian strain of Chlamydia psittaci causing severe keratoconjunctivitis in a bird fancier. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 20: 1179-85. PMID 7619997 DOI: 10.1093/Clinids/20.5.1179  0.445
1995 Dean D, Oudens E, Bolan G, Padian N, Schachter J. Major outer membrane protein variants of chlamydia trachomatis are associated with severe upper genital tract infections and histopathology in san francisco Journal of Infectious Diseases. 172: 1013-1022. PMID 7561174 DOI: 10.1093/Infdis/172.4.1013  0.359
1994 Dean D, Stephens RS. Identification of individual genotypes of Chlamydia trachomatis from experimentally mixed serovars and mixed infections among trachoma patients. Journal of Clinical Microbiology. 32: 1506-10. PMID 8077396 DOI: 10.1128/Jcm.32.6.1506-1510.1994  0.415
1992 Dean D, Schachter J, Dawson CR, Stephens RS. Comparison of the major outer membrane protein variant sequence regions of B/Ba isolates: a molecular epidemiologic approach to Chlamydia trachomatis infections. The Journal of Infectious Diseases. 166: 383-92. PMID 1634810 DOI: 10.1093/Infdis/166.2.383  0.374
1991 Dean D, Patton M, Stephens RS. Direct sequence evaluation of the major outer membrane protein gene variant regions of Chlamydia trachomatis subtypes D', I', and L2'. Infection and Immunity. 59: 1579-82. PMID 1706325 DOI: 10.1128/Iai.59.4.1579-1582.1991  0.31
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