Year |
Citation |
Score |
2020 |
Srimongkol G, Ditmangklo B, Choopara I, Thaniyavarn J, Dean D, Kokpol S, Vilaivan T, Somboonna N. Rapid colorimetric loop-mediated isothermal amplification for hypersensitive point-of-care Staphylococcus aureus enterotoxin A gene detection in milk and pork products. Scientific Reports. 10: 7768. PMID 32385390 DOI: 10.1038/S41598-020-64710-0 |
0.309 |
|
2020 |
Svigals V, Blair A, Muller S, Sahu Khan A, Faktaufon D, Kama M, Tamani T, Esfandiari L, O'Brien M, Dean D. Hyperendemic Chlamydia trachomatis sexually transmitted infections among females represent a high burden of asymptomatic disease and health disparity among Pacific Islanders in Fiji. Plos Neglected Tropical Diseases. 14: e0008022. PMID 31971951 DOI: 10.1371/Journal.Pntd.0008022 |
0.327 |
|
2019 |
Dean D, Ziklo N, Somboonna N, Suh JH, Ferrin T. Reply to Rockey et al., "Genomics and Chlamydial Persistence ". Mbio. 10. PMID 31848290 DOI: 10.1128/Mbio.02957-19 |
0.328 |
|
2019 |
Somboonna N, Ziklo N, Ferrin TE, Hyuk Suh J, Dean D. Clinical Persistence of Chlamydia trachomatis Sexually Transmitted Strains Involves Novel Mutations in the Functional αββα Tetramer of the Tryptophan Synthase Operon. Mbio. 10. PMID 31311884 DOI: 10.1128/Mbio.01464-19 |
0.4 |
|
2019 |
Jolly AL, Rau S, Chadha AK, Abdulraheem EA, Dean D. Stromal Fibroblasts Drive Host Inflammatory Responses That Are Dependent on Chlamydia trachomatis Strain Type and Likely Influence Disease Outcomes. Mbio. 10. PMID 30890604 DOI: 10.1128/Mbio.00225-19 |
0.377 |
|
2018 |
Somboonna N, Choopara I, Arunrut N, Sukhonpan K, Sayasathid J, Dean D, Kiatpathomchai W. Rapid and sensitive detection of Chlamydia trachomatis sexually transmitted infections in resource-constrained settings in Thailand at the point-of-care. Plos Neglected Tropical Diseases. 12: e0006900. PMID 30571705 DOI: 10.1371/Journal.Pntd.0006900 |
0.384 |
|
2018 |
Marti H, Borel N, Dean D, Leonard CA. Evaluating the Antibiotic Susceptibility of - New Approaches for Assays. Frontiers in Microbiology. 9: 1414. PMID 30018602 DOI: 10.3389/Fmicb.2018.01414 |
0.343 |
|
2017 |
Smelov V, Vrbanac A, van Ess EF, Noz MP, Wan R, Eklund C, Morgan T, Shrier LA, Sanders B, Dillner J, de Vries HJC, Morre SA, Dean D. Chlamydia trachomatis Strain Types Have Diversified Regionally and Globally with Evidence for Recombination across Geographic Divides. Frontiers in Microbiology. 8: 2195. PMID 29180986 DOI: 10.3389/Fmicb.2017.02195 |
0.337 |
|
2017 |
Sharma M, Recuero-Checa MA, Fan FY, Dean D. Chlamydia trachomatis regulates growth and development in response to host cell fatty acid availability in the absence of lipid droplets. Cellular Microbiology. PMID 29117636 DOI: 10.1111/Cmi.12801 |
0.3 |
|
2017 |
Turingan RS, Kaplun L, Krautz-Peterson G, Norsworthy S, Zolotova A, Joseph SJ, Read TD, Dean D, Tan E, Selden RF. Rapid detection and strain typing of Chlamydia trachomatis using a highly multiplexed microfluidic PCR assay. Plos One. 12: e0178653. PMID 28562672 DOI: 10.1371/Journal.Pone.0178653 |
0.392 |
|
2017 |
Diaz MH, Desai HP, Morrison SS, Benitez AJ, Wolff BJ, Caravas J, Read TD, Dean D, Winchell JM. Comprehensive bioinformatics analysis of Mycoplasma pneumoniae genomes to investigate underlying population structure and type-specific determinants. Plos One. 12: e0174701. PMID 28410368 DOI: 10.1371/Journal.Pone.0174701 |
0.311 |
|
2017 |
Marti H, Kim H, Joseph SJ, Dojiri S, Read TD, Dean D. Tet(C) Gene Transfer between Chlamydia suis Strains Occurs by Homologous Recombination after Co-infection: Implications for Spread of Tetracycline-Resistance among Chlamydiaceae. Frontiers in Microbiology. 8: 156. PMID 28223970 DOI: 10.3389/Fmicb.2017.00156 |
0.405 |
|
2016 |
Choopara I, Arunrut N, Kiatpathomchai W, Dean D, Somboonna N. Rapid and Visual Chlamydia trachomatis Detection using Loop-Mediated Isothermal Amplification and Hydroxynaphthal Blue. Letters in Applied Microbiology. PMID 27689353 DOI: 10.1111/Lam.12675 |
0.343 |
|
2016 |
Joseph SJ, Cox D, Wolff B, Morrison SS, Kozak-Muiznieks NA, Frace M, Didelot X, Castillo-Ramirez S, Winchell J, Read TD, Dean D. Dynamics of genome change among Legionella species. Scientific Reports. 6: 33442. PMID 27633769 DOI: 10.1038/Srep33442 |
0.346 |
|
2016 |
Joseph SJ, Marti H, Didelot X, Read TD, Dean D. Tetracycline Selective Pressure and Homologous Recombination Shape the Evolution of Chlamydia suis: A Recently Identified Zoonotic Pathogen. Genome Biology and Evolution. 8: 2613-2623. PMID 27576537 DOI: 10.1093/Gbe/Evw182 |
0.403 |
|
2015 |
Joseph SJ, Marti H, Didelot X, Castillo-Ramirez S, Read TD, Dean D. Chlamydiaceae Genomics Reveals Interspecies Admixture and the Recent Evolution of Chlamydia abortus Infecting Lower Mammalian Species and Humans. Genome Biology and Evolution. 7: 3070-84. PMID 26507799 DOI: 10.1093/Gbe/Evv201 |
0.399 |
|
2015 |
Wolff BJ, Morrison SS, Pesti D, Ganakammal SR, Srinivasamoorthy G, Changayil S, Weil MR, MacCannell D, Rowe L, Frace M, Ritchie BW, Dean D, Winchell J. Chlamydia psittaci Comparative Genomics Reveals Intraspecies Variations in the Putative Outer Membrane and Type III Secretion System Genes. Microbiology (Reading, England). PMID 25887617 DOI: 10.1099/Mic.0.000097 |
0.416 |
|
2015 |
Ezewudo MN, Joseph SJ, Castillo-Ramirez S, Dean D, Del Rio C, Didelot X, Dillon JA, Selden RF, Shafer WM, Turingan RS, Unemo M, Read TD. Population structure of Neisseria gonorrhoeae based on whole genome data and its relationship with antibiotic resistance. Peerj. 3: e806. PMID 25780762 DOI: 10.7717/Peerj.806 |
0.336 |
|
2014 |
Batteiger BE, Wan R, Williams JA, He L, Ma A, Fortenberry JD, Dean D. Novel Chlamydia trachomatis strains in heterosexual sex partners, Indianapolis, Indiana, USA. Emerging Infectious Diseases. 20: 1841-7. PMID 25340463 DOI: 10.3201/2011.140604 |
0.4 |
|
2014 |
Joseph SJ, Li B, Ghonasgi T, Haase CP, Qin ZS, Dean D, Read TD. Direct amplification, sequencing and profiling of Chlamydia trachomatis strains in single and mixed infection clinical samples. Plos One. 9: e99290. PMID 24971628 DOI: 10.1371/Journal.Pone.0099290 |
0.39 |
|
2014 |
Al-Kuhlani M, Rothchild J, Pal S, de la Maza LM, Ouburg S, Morré SA, Dean D, Ojcius DM. TRAIL-R1 is a negative regulator of pro-inflammatory responses and modulates long-term sequelae resulting from Chlamydia trachomatis infections in humans. Plos One. 9: e93939. PMID 24695582 DOI: 10.1371/Journal.Pone.0093939 |
0.321 |
|
2013 |
Dean D, Rothschild J, Ruettger A, Kandel RP, Sachse K. Zoonotic Chlamydiaceae species associated with trachoma, Nepal. Emerging Infectious Diseases. 19: 1948-1955. PMID 24274654 DOI: 10.3201/Eid1912.130656 |
0.366 |
|
2013 |
Read TD, Joseph SJ, Didelot X, Liang B, Patel L, Dean D. Comparative analysis of Chlamydia psittaci genomes reveals the recent emergence of a pathogenic lineage with a broad host range. Mbio. 4. PMID 23532978 DOI: 10.1128/Mbio.00604-12 |
0.406 |
|
2013 |
Wang A, Al-Kuhlani M, Johnston SC, Ojcius DM, Chou J, Dean D. Transcription factor complex AP-1 mediates inflammation initiated by Chlamydia pneumoniae infection. Cellular Microbiology. 15: 779-94. PMID 23163821 DOI: 10.1111/Cmi.12071 |
0.338 |
|
2012 |
Joseph SJ, Didelot X, Rothschild J, de Vries HJ, Morré SA, Read TD, Dean D. Population genomics of Chlamydia trachomatis: insights on drift, selection, recombination, and population structure. Molecular Biology and Evolution. 29: 3933-46. PMID 22891032 DOI: 10.1093/Molbev/Mss198 |
0.428 |
|
2012 |
Bhattarai SR, Yoo SY, Lee SW, Dean D. Engineered phage-based therapeutic materials inhibit Chlamydia trachomatis intracellular infection. Biomaterials. 33: 5166-74. PMID 22494890 DOI: 10.1016/J.Biomaterials.2012.03.054 |
0.336 |
|
2012 |
Srinivasan T, Bruno WJ, Wan R, Yen A, Duong J, Dean D. In vitro recombinants of antibiotic-resistant Chlamydia trachomatis strains have statistically more breakpoints than clinical recombinants for the same sequenced loci and exhibit selection at unexpected loci. Journal of Bacteriology. 194: 617-26. PMID 22123249 DOI: 10.1128/Jb.06268-11 |
0.368 |
|
2011 |
Joseph SJ, Didelot X, Gandhi K, Dean D, Read TD. Interplay of recombination and selection in the genomes of Chlamydia trachomatis Biology Direct. 6. PMID 21615910 DOI: 10.1186/1745-6150-6-28 |
0.365 |
|
2011 |
Somboonna N, Wan R, Ojcius DM, Pettengill MA, Joseph SJ, Chang A, Hsu R, Read TD, Dean D. Hypervirulent Chlamydia trachomatis clinical strain is a recombinant between lymphogranuloma venereum (L(2)) and D lineages. Mbio. 2: e00045-11. PMID 21540364 DOI: 10.1128/Mbio.00045-11 |
0.398 |
|
2010 |
Atik B, Johnston SC, Dean D. Association of Carotid Plaque Lp-PLA2 with Macrophages and Chlamydia pneumoniae infection among Patients at Risk for Stroke Plos One. 5. PMID 20543948 DOI: 10.1371/Journal.Pone.0011026 |
0.301 |
|
2010 |
Skwor T, Kandel RP, Basravi S, Khan A, Sharma B, Dean D. Characterization of Humoral Immune Responses to Chlamydial HSP60, CPAF, and CT795 in Inflammatory and Severe Trachoma Investigative Ophthalmology & Visual Science. 51: 5128-5136. PMID 20463311 DOI: 10.1167/Iovs.09-5113 |
0.34 |
|
2009 |
Dean D, Bruno WJ, Wan R, Gomes JP, Devignot S, Mehari T, de Vries HJ, Morré SA, Myers G, Read TD, Spratt BG. Predicting phenotype and emerging strains among Chlamydia trachomatis infections. Emerging Infectious Diseases. 15: 1385-94. PMID 19788805 DOI: 10.3201/Eid1509.090272 |
0.411 |
|
2009 |
Tan C, Hsia RC, Shou H, Haggerty CL, Ness RB, Gaydos CA, Dean D, Scurlock AM, Wilson DP, Bavoil PM. Chlamydia trachomatis-infected patients display variable antibody profiles against the nine-member polymorphic membrane protein family. Infection and Immunity. 77: 3218-26. PMID 19487469 DOI: 10.1128/Iai.01566-08 |
0.401 |
|
2008 |
Atik B, Skwor TA, Kandel RP, Sharma B, Adhikari HK, Steiner L, Erlich H, Dean D. Identification of novel single nucleotide polymorphisms in inflammatory genes as risk factors associated with trachomatous trichiasis. Plos One. 3: e3600. PMID 18974840 DOI: 10.1371/Journal.Pone.0003600 |
0.308 |
|
2008 |
Skwor TA, Atik B, Kandel RP, Adhikari HK, Sharma B, Dean D. Role of secreted conjunctival mucosal cytokine and chemokine proteins in different stages of trachomatous disease. Plos Neglected Tropical Diseases. 2: e264. PMID 18628987 DOI: 10.1371/Journal.Pntd.0000264 |
0.329 |
|
2008 |
Somboonna N, Mead S, Liu J, Dean D. Discovering and differentiating new and emerging clonal populations of Chlamydia trachomatis with a novel shotgun cell culture harvest assay. Emerging Infectious Diseases. 14: 445-53. PMID 18325260 DOI: 10.3201/Eid1403.071071 |
0.435 |
|
2008 |
Dean D, Kandel RP, Adhikari HK, Hessel T. Multiple Chlamydiaceae species in trachoma: implications for disease pathogenesis and control. Plos Medicine. 5: e14. PMID 18177205 DOI: 10.1371/Journal.Pmed.0050014 |
0.385 |
|
2007 |
Nunes A, Gomes JP, Mead S, Florindo C, Correia H, Borrego MJ, Dean D. Comparative expression profiling of the Chlamydia trachomatis pmp gene family for clinical and reference strains. Plos One. 2: e878. PMID 17849007 DOI: 10.1371/Journal.Pone.0000878 |
0.358 |
|
2007 |
Liu Z, Rank R, Kaltenboeck B, Magnino S, Dean D, Burall L, Plaut RD, Read TD, Myers G, Bavoil PM. Genomic plasticity of the rrn-nqrF intergenic segment in the Chlamydiaceae. Journal of Bacteriology. 189: 2128-32. PMID 17158668 DOI: 10.1128/Jb.00378-06 |
0.315 |
|
2007 |
Gomes JP, Bruno WJ, Nunes A, Santos N, Florindo C, Borrego MJ, Dean D. Evolution of Chlamydia trachomatis diversity occurs by widespread interstrain recombination involving hotspots. Genome Research. 17: 50-60. PMID 17090662 DOI: 10.1101/Gr.5674706 |
0.396 |
|
2006 |
Atik B, Thanh TTK, Luong VQ, Lagree S, Dean D. Impact of Annual Targeted Treatment on Infectious Trachoma and Susceptibility to Reinfection Jama. 296: 1488-1497. PMID 17003397 DOI: 10.1001/Jama.296.12.1488 |
0.336 |
|
2006 |
Millman K, Black CM, Stamm WE, Jones RB, Hook EW, Martin DH, Bolan G, Tavaré S, Dean D. Population-based genetic epidemiologic analysis of Chlamydia trachomatis serotypes and lack of association between ompA polymorphisms and clinical phenotypes. Microbes and Infection / Institut Pasteur. 8: 604-11. PMID 16527508 DOI: 10.1016/J.Micinf.2005.08.012 |
0.388 |
|
2006 |
Gomes JP, Nunes A, Bruno WJ, Borrego MJ, Florindo C, Dean D. Polymorphisms in the nine polymorphic membrane proteins of Chlamydia trachomatis across all serovars: evidence for serovar Da recombination and correlation with tissue tropism. Journal of Bacteriology. 188: 275-86. PMID 16352844 DOI: 10.1128/Jb.188.1.275-286.2006 |
0.352 |
|
2006 |
Gomes JP, Borrego MJ, Atik B, Santo I, Azevedo J, Brito de Sá A, Nogueira P, Dean D. Correlating Chlamydia trachomatis infectious load with urogenital ecological success and disease pathogenesis. Microbes and Infection / Institut Pasteur. 8: 16-26. PMID 16289001 DOI: 10.1016/J.Micinf.2005.05.014 |
0.331 |
|
2005 |
Hsieh JC, Tham DM, Feng W, Huang F, Embaie S, Liu K, Dean D, Hertle R, Fitzgerald DJ, Mrsny RJ. Intranasal immunization strategy to impede pilin-mediated binding of Pseudomonas aeruginosa to airway epithelial cells. Infection and Immunity. 73: 7705-17. PMID 16239575 DOI: 10.1128/Iai.73.11.7705-7717.2005 |
0.332 |
|
2005 |
Gomes JP, Hsia RC, Mead S, Borrego MJ, Dean D. Immunoreactivity and differential developmental expression of known and putative Chlamydia trachomatis membrane proteins for biologically variant serovars representing distinct disease groups. Microbes and Infection / Institut Pasteur. 7: 410-20. PMID 15784185 DOI: 10.1016/J.Micinf.2004.11.014 |
0.352 |
|
2004 |
Gomes JP, Bruno WJ, Borrego MJ, Dean D. Recombination in the genome of Chlamydia trachomatis involving the polymorphic membrane protein C gene relative to ompA and evidence for horizontal gene transfer. Journal of Bacteriology. 186: 4295-306. PMID 15205432 DOI: 10.1128/Jb.186.13.4295-4306.2004 |
0.397 |
|
2004 |
Millman K, Black CM, Johnson RE, Stamm WE, Jones RB, Hook EW, Martin DH, Bolan G, Tavaré S, Dean D. Population-based genetic and evolutionary analysis of Chlamydia trachomatis urogenital strain variation in the United States. Journal of Bacteriology. 186: 2457-65. PMID 15060049 DOI: 10.1128/Jb.186.8.2457-2465.2004 |
0.339 |
|
2004 |
Shrier LA, Dean D, Klein E, Harter K, Rice PA. Limitations of screening tests for the detection of Chlamydia trachomatis in asymptomatic adolescent and young adult women. American Journal of Obstetrics and Gynecology. 190: 654-62. PMID 15041995 DOI: 10.1016/J.Ajog.2003.09.063 |
0.306 |
|
2004 |
Shrier LA, Dean D, Klein E, Harter K, Rice PA. Limitations of screening tests for the detection of Chlamydia trachomatis in asymptomatic adolescent and young adult women Obstetrical & Gynecological Survey. 59: 513-515. DOI: 10.1097/00006254-200407000-00015 |
0.322 |
|
2002 |
Johnston SC, Messina LM, Browner WS, Lawton MT, Morris C, Dean D. C-reactive protein levels and viable Chlamydia pneumoniae in carotid artery atherosclerosis. Stroke. 32: 2748-52. PMID 11739967 DOI: 10.1161/Hs1201.099631 |
0.311 |
|
2001 |
Millman KL, Tavaré S, Dean D. Recombination in the ompA gene but not the omcB gene of Chlamydia contributes to serovar-specific differences in tissue tropism, immune surveillance, and persistence of the organism. Journal of Bacteriology. 183: 5997-6008. PMID 11567000 DOI: 10.1128/Jb.183.20.5997-6008.2001 |
0.398 |
|
2001 |
Dean D, Powers VC. Persistent Chlamydia trachomatis infections resist apoptotic stimuli Infection and Immunity. 69: 2442-2447. PMID 11254605 DOI: 10.1128/Iai.69.4.2442-2447.2001 |
0.372 |
|
2000 |
Dean D, Suchland RJ, Stamm WE. Evidence for Long-Term Cervical Persistence of Chlamydia trachomatis by omp1 Genotyping The Journal of Infectious Diseases. 182: 909-916. PMID 10950788 DOI: 10.1086/315778 |
0.354 |
|
1999 |
Dean D. Genotyping Chlamydia trachomatis by PCR Methods in Molecular Medicine. 20: 151-170. PMID 21390734 DOI: 10.1385/0-89603-535-2:151 |
0.389 |
|
1999 |
Knox CM, Cevallos V, Margolis TP, Dean D. Identification of bacterial pathogens in patients with endophthalmitis by 16S ribosomal DNA typing. American Journal of Ophthalmology. 128: 511-512. PMID 10577597 DOI: 10.1016/S0002-9394(99)00181-6 |
0.327 |
|
1998 |
Knox CM, Cevellos V, Dean D. 16S Ribosomal DNA Typing for Identification of Pathogens in Patients with Bacterial Keratitis Journal of Clinical Microbiology. 36: 3492-3496. PMID 9817860 DOI: 10.1128/Jcm.36.12.3492-3496.1998 |
0.329 |
|
1998 |
Lin JS, Donegan SP, Heeren TC, Greenberg M, Flaherty EE, Haivanis R, Su XH, Dean D, Newhall WJ, Knapp JS, Sarafian SK, Rice RJ, Morse SA, Rice PA. Transmission of Chlamydia trachomatis and Neisseria gonorrhoeae among men with urethritis and their female sex partners. The Journal of Infectious Diseases. 178: 1707-12. PMID 9815223 DOI: 10.1086/314485 |
0.314 |
|
1998 |
Lietman T, Brooks D, Moncada J, Schachter J, Dawson C, Dean D. Chronic Follicular Conjunctivitis Associated with Chlamydia psittaci or Chlamydia pneumoniae Clinical Infectious Diseases. 26: 1335-1340. PMID 9636859 DOI: 10.1086/516373 |
0.384 |
|
1998 |
Chu KM, Rathinam R, Namperumalsamy P, Dean D. Identification of Leptospira species in the pathogenesis of uveitis and determination of clinical ocular characteristics in South India The Journal of Infectious Diseases. 177: 1314-1321. PMID 9593018 DOI: 10.1086/515273 |
0.303 |
|
1998 |
Molestina RE, Dean D, Miller RD, Ramirez JA, Summersgill JT. Characterization of a Strain of Chlamydia pneumoniae Isolated from a Coronary Atheroma by Analysis of the omp1 Gene and Biological Activity in Human Endothelial Cells Infection and Immunity. 66: 1370-1376. PMID 9529055 DOI: 10.1128/Iai.66.4.1370-1376.1998 |
0.407 |
|
1998 |
Dean D, Ferrero D, McCarthy M. Comparison of Performance and Cost-Effectiveness of Direct Fluorescent-Antibody, Ligase Chain Reaction, and PCR Assays for Verification of Chlamydial Enzyme Immunoassay Results for Populations with a Low to Moderate Prevalence of Chlamydia trachomatis Infection Journal of Clinical Microbiology. 36: 94-99. PMID 9431928 DOI: 10.1128/Jcm.36.1.94-99.1998 |
0.3 |
|
1997 |
Dean D, Millman K. Molecular and mutation trends analyses of omp1 alleles for serovar E of Chlamydia trachomatis. Implications for the immunopathogenesis of disease. Journal of Clinical Investigation. 99: 475-483. PMID 9022081 DOI: 10.1172/Jci119182 |
0.337 |
|
1995 |
Dean D, Shama A, Schachter J, Dawson CR. Molecular identification of an avian strain of Chlamydia psittaci causing severe keratoconjunctivitis in a bird fancier. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 20: 1179-85. PMID 7619997 DOI: 10.1093/Clinids/20.5.1179 |
0.445 |
|
1995 |
Dean D, Oudens E, Bolan G, Padian N, Schachter J. Major outer membrane protein variants of chlamydia trachomatis are associated with severe upper genital tract infections and histopathology in san francisco Journal of Infectious Diseases. 172: 1013-1022. PMID 7561174 DOI: 10.1093/Infdis/172.4.1013 |
0.359 |
|
1994 |
Dean D, Stephens RS. Identification of individual genotypes of Chlamydia trachomatis from experimentally mixed serovars and mixed infections among trachoma patients. Journal of Clinical Microbiology. 32: 1506-10. PMID 8077396 DOI: 10.1128/Jcm.32.6.1506-1510.1994 |
0.415 |
|
1992 |
Dean D, Schachter J, Dawson CR, Stephens RS. Comparison of the major outer membrane protein variant sequence regions of B/Ba isolates: a molecular epidemiologic approach to Chlamydia trachomatis infections. The Journal of Infectious Diseases. 166: 383-92. PMID 1634810 DOI: 10.1093/Infdis/166.2.383 |
0.374 |
|
1991 |
Dean D, Patton M, Stephens RS. Direct sequence evaluation of the major outer membrane protein gene variant regions of Chlamydia trachomatis subtypes D', I', and L2'. Infection and Immunity. 59: 1579-82. PMID 1706325 DOI: 10.1128/Iai.59.4.1579-1582.1991 |
0.31 |
|
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