| Year |
Citation |
Score |
| 2024 |
Lim D, Baek C, Blanchette M. Graphylo: A deep learning approach for predicting regulatory DNA and RNA sites from whole-genome multiple alignments. Iscience. 27: 109002. PMID 38362268 DOI: 10.1016/j.isci.2024.109002 |
0.319 |
|
| 2022 |
Ahsan F, Yan Z, Precup D, Blanchette M. PhyloPGM: boosting regulatory function prediction accuracy using evolutionary information. Bioinformatics (Oxford, England). 38: i299-i306. PMID 35758792 DOI: 10.1093/bioinformatics/btac259 |
0.339 |
|
| 2021 |
Wang XQD, Cameron CJF, Segal D, Paquette D, Blanchette M, Dostie J. Profiling Chromatin Landscape at High Resolution and Throughput with 2C-ChIP. Methods in Molecular Biology (Clifton, N.J.). 2157: 127-157. PMID 32820402 DOI: 10.1007/978-1-0716-0664-3_8 |
0.435 |
|
| 2020 |
Yan Z, Hamilton WL, Blanchette M. Graph neural representational learning of RNA secondary structures for predicting RNA-protein interactions. Bioinformatics (Oxford, England). 36: i276-i284. PMID 32657407 DOI: 10.1093/Bioinformatics/Btaa456 |
0.329 |
|
| 2020 |
Lim D, Blanchette M. EvoLSTM: context-dependent models of sequence evolution using a sequence-to-sequence LSTM. Bioinformatics (Oxford, England). 36: i353-i361. PMID 32657367 DOI: 10.1093/Bioinformatics/Btaa447 |
0.368 |
|
| 2020 |
Cameron CJF, Wang XQD, Dostie J, Blanchette M. LAMPS: an analysis pipeline for sequence-specific ligation-mediated amplification reads. Bmc Research Notes. 13: 273. PMID 32493406 DOI: 10.1186/S13104-020-05106-1 |
0.371 |
|
| 2020 |
Bergalet J, Patel D, Legendre F, Lapointe C, Benoit Bouvrette LP, Chin A, Blanchette M, Kwon E, Lécuyer E. Inter-dependent Centrosomal Co-localization of the cen and ik2 cis-Natural Antisense mRNAs in Drosophila. Cell Reports. 30: 3339-3352.e6. PMID 32160541 DOI: 10.1016/J.Celrep.2020.02.047 |
0.374 |
|
| 2020 |
Bonetti A, Agostini F, Suzuki AM, Hashimoto K, Pascarella G, Gimenez J, Roos L, Nash AJ, Ghilotti M, Cameron CJF, Valentine M, Medvedeva YA, Noguchi S, Agirre E, Kashi K, ... ... Blanchette M, et al. RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions. Nature Communications. 11: 1018. PMID 32094342 DOI: 10.1038/S41467-020-14337-6 |
0.428 |
|
| 2020 |
Cameron CJ, Dostie J, Blanchette M. HIFI: estimating DNA-DNA interaction frequency from Hi-C data at restriction-fragment resolution. Genome Biology. 21: 11. PMID 31937349 DOI: 10.1186/S13059-019-1913-Y |
0.302 |
|
| 2020 |
Georges-Filteau J, Hamelin RC, Blanchette M. Mycorrhiza: Genotype Assignment using Phylogenetic Networks. Bioinformatics. 36: 212-220. PMID 31197316 DOI: 10.1093/Bioinformatics/Btz476 |
0.326 |
|
| 2019 |
Benoit Bouvrette LP, Blanchette M, Lécuyer E. Bioinformatics Approaches to Gain Insights into cis-Regulatory Motifs Involved in mRNA Localization. Advances in Experimental Medicine and Biology. 1203: 165-194. PMID 31811635 DOI: 10.1007/978-3-030-31434-7_7 |
0.336 |
|
| 2019 |
Cloutier P, Poitras C, Faubert D, Bouchard A, Blanchette M, Gauthier MS, Coulombe B. Upstream ORF-encoded ASDURF is a novel prefoldin-like subunit of the PAQosome. Journal of Proteome Research. PMID 31738558 DOI: 10.1021/Acs.Jproteome.9B00599 |
0.33 |
|
| 2019 |
Benoit Bouvrette LP, Bovaird S, Blanchette M, Lécuyer E. oRNAment: a database of putative RNA binding protein target sites in the transcriptomes of model species. Nucleic Acids Research. PMID 31724725 DOI: 10.1093/Nar/Gkz986 |
0.36 |
|
| 2019 |
Yan Z, Lécuyer E, Blanchette M. Prediction of mRNA subcellular localization using deep recurrent neural networks. Bioinformatics (Oxford, England). 35: i333-i342. PMID 31510698 DOI: 10.1093/Bioinformatics/Btz337 |
0.371 |
|
| 2019 |
Swenson KM, Blanchette M. Large-scale mammalian genome rearrangements coincide with chromatin interactions. Bioinformatics. 35. PMID 31510664 DOI: 10.1093/Bioinformatics/Btz343 |
0.356 |
|
| 2019 |
Wang XQD, Cameron CJF, Paquette D, Segal D, Warsaba R, Blanchette M, Dostie J. 2C-ChIP: measuring chromatin immunoprecipitation signal from defined genomic regions with deep sequencing. Bmc Genomics. 20: 162. PMID 30819105 DOI: 10.1186/S12864-019-5532-5 |
0.449 |
|
| 2019 |
Noutahi E, Calderon V, Blanchette M, El-Mabrouk N, Lang BF. Rapid genetic code evolution in green algal mitochondrial genomes. Molecular Biology and Evolution. PMID 30698742 DOI: 10.1093/Molbev/Msz016 |
0.354 |
|
| 2018 |
Dostie J, Blanchette M. 3D genome mapping and analysis methods. Methods (San Diego, Calif.). 142: 1-2. PMID 29880426 DOI: 10.1016/J.Ymeth.2018.05.017 |
0.327 |
|
| 2017 |
Benoit Bouvrette LP, Cody NAL, Bergalet J, Lefebvre FA, Diot C, Wang X, Blanchette M, Lécuyer E. CeFra-seq reveals broad asymmetric mRNA and non-coding RNA distribution profiles in Drosophila and human cells. Rna (New York, N.Y.). PMID 29079635 DOI: 10.1261/Rna.063172.117 |
0.337 |
|
| 2017 |
Lavallée-Adam M, Cloutier P, Coulombe B, Blanchette M. Functional 5' UTR motif discovery with LESMoN: Local Enrichment of Sequence Motifs in biological Networks. Nucleic Acids Research. 45: 10415-10427. PMID 28977652 DOI: 10.1093/Nar/Gkx751 |
0.386 |
|
| 2017 |
Dali R, Blanchette M. A critical assessment of topologically associating domain prediction tools. Nucleic Acids Research. 45: 2994-3005. PMID 28334773 DOI: 10.1093/Nar/Gkx145 |
0.336 |
|
| 2016 |
Leclercq M, Diallo AB, Blanchette M. Prediction of human miRNA target genes using computationally reconstructed ancestral mammalian sequences. Nucleic Acids Research. PMID 27899600 DOI: 10.1093/Nar/Gkw1085 |
0.348 |
|
| 2016 |
Swenson KM, Simonaitis P, Blanchette M. Models and algorithms for genome rearrangement with positional constraints. Algorithms For Molecular Biology : Amb. 11: 13. PMID 27190550 DOI: 10.1186/S13015-016-0065-9 |
0.385 |
|
| 2016 |
Joly-Lopez Z, Hoen DR, Blanchette M, Bureau TE. Phylogenetic and Genomic Analyses Resolve the Origin of Important Plant Genes Derived from Transposable Elements. Molecular Biology and Evolution. PMID 27189548 DOI: 10.1093/Molbev/Msw067 |
0.373 |
|
| 2015 |
Busche S, Shao X, Caron M, Kwan T, Allum F, Cheung WA, Ge B, Westfall S, Simon MM, Barrett A, Bell JT, McCarthy MI, Deloukas P, Blanchette M, et al. Population whole-genome bisulfite sequencing across two tissues highlights the environment as the principal source of human methylome variation. Genome Biology. 16: 290. PMID 26699896 DOI: 10.1186/S13059-015-0856-1 |
0.38 |
|
| 2015 |
Malina A, Cameron CJ, Robert F, Blanchette M, Dostie J, Pelletier J. PAM multiplicity marks genomic target sites as inhibitory to CRISPR-Cas9 editing. Nature Communications. 6: 10124. PMID 26644285 DOI: 10.1038/Ncomms10124 |
0.393 |
|
| 2015 |
Hoen DR, Hickey G, Bourque G, Casacuberta J, Cordaux R, Feschotte C, Fiston-Lavier AS, Hua-Van A, Hubley R, Kapusta A, Lerat E, Maumus F, Pollock DD, Quesneville H, Smit A, ... ... Blanchette M, et al. A call for benchmarking transposable element annotation methods. Mobile Dna. 6: 13. PMID 26244060 DOI: 10.1186/S13100-015-0044-6 |
0.35 |
|
| 2015 |
Butyaev A, Mavlyutov R, Blanchette M, Cudré-Mauroux P, Waldispühl J. A low-latency, big database system and browser for storage, querying and visualization of 3D genomic data. Nucleic Acids Research. PMID 25990738 DOI: 10.1093/Nar/Gkv476 |
0.357 |
|
| 2014 |
Williamson RJ, Josephs EB, Platts AE, Hazzouri KM, Haudry A, Blanchette M, Wright SI. Evidence for widespread positive and negative selection in coding and conserved noncoding regions of Capsella grandiflora. Plos Genetics. 10: e1004622. PMID 25255320 DOI: 10.1371/Journal.Pgen.1004622 |
0.387 |
|
| 2014 |
Rousseau M, Ferraiuolo MA, Crutchley JL, Wang XQ, Miura H, Blanchette M, Dostie J. Classifying leukemia types with chromatin conformation data. Genome Biology. 15: R60. PMID 24995990 DOI: 10.1186/Gb-2014-15-4-R60 |
0.326 |
|
| 2014 |
Rousseau M, Crutchley JL, Miura H, Suderman M, Blanchette M, Dostie J. Hox in motion: tracking HoxA cluster conformation during differentiation. Nucleic Acids Research. 42: 1524-40. PMID 24174538 DOI: 10.1093/Nar/Gkt998 |
0.326 |
|
| 2014 |
Cloutier P, Lavallée-Adam M, Faubert D, Blanchette M, Coulombe B. Methylation of the DNA/RNA-binding protein Kin17 by METTL22 affects its association with chromatin. Journal of Proteomics. 100: 115-24. PMID 24140279 DOI: 10.1016/J.Jprot.2013.10.008 |
0.32 |
|
| 2013 |
Kwak D, Kam A, Becerra D, Zhou Q, Hops A, Zarour E, Kam A, Sarmenta L, Blanchette M, Waldispühl J. Open-Phylo: a customizable crowd-computing platform for multiple sequence alignment. Genome Biology. 14: R116. PMID 24148814 DOI: 10.1186/Gb-2013-14-10-R116 |
0.337 |
|
| 2013 |
Haudry A, Platts AE, Vello E, Hoen DR, Leclercq M, Williamson RJ, Forczek E, Joly-Lopez Z, Steffen JG, Hazzouri KM, Dewar K, Stinchcombe JR, Schoen DJ, Wang X, Schmutz J, ... ... Blanchette M, et al. An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions. Nature Genetics. 45: 891-8. PMID 23817568 DOI: 10.1038/Ng.2684 |
0.454 |
|
| 2013 |
Slotte T, Hazzouri KM, Ågren JA, Koenig D, Maumus F, Guo YL, Steige K, Platts AE, Escobar JS, Newman LK, Wang W, Mandáková T, Vello E, Smith LM, Henz SR, ... ... Blanchette M, et al. The Capsella rubella genome and the genomic consequences of rapid mating system evolution. Nature Genetics. 45: 831-5. PMID 23749190 DOI: 10.1038/Ng.2669 |
0.384 |
|
| 2013 |
Zhang Y, Ponty Y, Blanchette M, Lécuyer E, Waldispühl J. SPARCS: a web server to analyze (un)structured regions in coding RNA sequences. Nucleic Acids Research. 41: W480-5. PMID 23748952 DOI: 10.1093/Nar/Gkt461 |
0.373 |
|
| 2013 |
Meunier C, Van Der Kraak L, Turbide C, Groulx N, Labouba I, Cingolani P, Blanchette M, Yeretssian G, Mes-Masson AM, Saleh M, Beauchemin N, Gros P. Positional mapping and candidate gene analysis of the mouse Ccs3 locus that regulates differential susceptibility to carcinogen-induced colorectal cancer. Plos One. 8: e58733. PMID 23516545 DOI: 10.1371/Journal.Pone.0058733 |
0.336 |
|
| 2013 |
Cloutier P, Lavallée-Adam M, Faubert D, Blanchette M, Coulombe B. A newly uncovered group of distantly related lysine methyltransferases preferentially interact with molecular chaperones to regulate their activity. Plos Genetics. 9: e1003210. PMID 23349634 DOI: 10.1371/Journal.Pgen.1003210 |
0.327 |
|
| 2012 |
Gagnon Y, Blanchette M, El-Mabrouk N. A flexible ancestral genome reconstruction method based on gapped adjacencies. Bmc Bioinformatics. 13: S4. PMID 23281872 DOI: 10.1186/1471-2105-13-S19-S4 |
0.399 |
|
| 2012 |
Blanchette M. Exploiting ancestral mammalian genomes for the prediction of human transcription factor binding sites. Bmc Bioinformatics. 13: S2. PMID 23281809 DOI: 10.1186/1471-2105-13-S19-S2 |
0.439 |
|
| 2012 |
Kawrykow A, Roumanis G, Kam A, Kwak D, Leung C, Wu C, Zarour E, Sarmenta L, Blanchette M, Waldispühl J. Phylo: a citizen science approach for improving multiple sequence alignment. Plos One. 7: e31362. PMID 22412834 DOI: 10.1371/Journal.Pone.0031362 |
0.382 |
|
| 2011 |
Rousseau M, Fraser J, Ferraiuolo MA, Dostie J, Blanchette M. Three-dimensional modeling of chromatin structure from interaction frequency data using Markov chain Monte Carlo sampling. Bmc Bioinformatics. 12: 414. PMID 22026390 DOI: 10.1186/1471-2105-12-414 |
0.388 |
|
| 2011 |
Hickey G, Blanchette M. A probabilistic model for sequence alignment with context-sensitive indels. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 18: 1449-64. PMID 21951055 DOI: 10.1089/Cmb.2011.0157 |
0.411 |
|
| 2011 |
Mongin E, Dewar K, Blanchette M. Mapping association between long-range cis-regulatory regions and their target genes using synteny. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 18: 1115-30. PMID 21899419 DOI: 10.1089/Cmb.2011.0088 |
0.394 |
|
| 2011 |
Sadri J, Diallo AB, Blanchette M. Predicting site-specific human selective pressure using evolutionary signatures. Bioinformatics (Oxford, England). 27: i266-74. PMID 21685080 DOI: 10.1093/bioinformatics/btr241 |
0.304 |
|
| 2011 |
Mongin E, Auer TO, Bourrat F, Gruhl F, Dewar K, Blanchette M, Wittbrodt J, Ettwiller L. Combining computational prediction of cis-regulatory elements with a new enhancer assay to efficiently label neuronal structures in the medaka fish. Plos One. 6: e19747. PMID 21637758 DOI: 10.1371/Journal.Pone.0019747 |
0.311 |
|
| 2011 |
Graveley BR, Brooks AN, Carlson JW, Duff MO, Landolin JM, Yang L, Artieri CG, van Baren MJ, Boley N, Booth BW, Brown JB, Cherbas L, Davis CA, Dobin A, Li R, ... Blanchette M, et al. The developmental transcriptome of Drosophila melanogaster. Nature. 471: 473-9. PMID 21179090 DOI: 10.1038/Nature09715 |
0.321 |
|
| 2011 |
Gagnon Y, Blanchette M, El-Mabrouk N. Evolution by whole genome duplication F1000research. 2. DOI: 10.7490/F1000Research.1108.1 |
0.393 |
|
| 2010 |
Forget D, Lacombe AA, Cloutier P, Al-Khoury R, Bouchard A, Lavallée-Adam M, Faubert D, Jeronimo C, Blanchette M, Coulombe B. The protein interaction network of the human transcription machinery reveals a role for the conserved GTPase RPAP4/GPN1 and microtubule assembly in nuclear import and biogenesis of RNA polymerase II. Molecular & Cellular Proteomics : McP. 9: 2827-39. PMID 20855544 DOI: 10.1074/Mcp.M110.003616 |
0.34 |
|
| 2010 |
Fraser J, Rousseau M, Blanchette M, Dostie J. Computing chromosome conformation. Methods in Molecular Biology (Clifton, N.J.). 674: 251-68. PMID 20827597 DOI: 10.1007/978-1-60761-854-6_16 |
0.359 |
|
| 2010 |
Ferraiuolo MA, Rousseau M, Miyamoto C, Shenker S, Wang XQ, Nadler M, Blanchette M, Dostie J. The three-dimensional architecture of Hox cluster silencing. Nucleic Acids Research. 38: 7472-84. PMID 20660483 DOI: 10.1093/Nar/Gkq644 |
0.331 |
|
| 2010 |
Wagner JR, Ge B, Pokholok D, Gunderson KL, Pastinen T, Blanchette M. Computational analysis of whole-genome differential allelic expression data in human. Plos Computational Biology. 6: e1000849. PMID 20628616 DOI: 10.1371/Journal.Pcbi.1000849 |
0.409 |
|
| 2010 |
Diallo AB, Makarenkov V, Blanchette M. Ancestors 1.0: a web server for ancestral sequence reconstruction. Bioinformatics (Oxford, England). 26: 130-1. PMID 19850756 DOI: 10.1093/Bioinformatics/Btp600 |
0.4 |
|
| 2009 |
Ge B, Pokholok DK, Kwan T, Grundberg E, Morcos L, Verlaan DJ, Le J, Koka V, Lam KC, Gagné V, Dias J, Hoberman R, Montpetit A, Joly MM, Harvey EJ, ... ... Blanchette M, et al. Global patterns of cis variation in human cells revealed by high-density allelic expression analysis. Nature Genetics. 41: 1216-22. PMID 19838192 DOI: 10.1038/Ng.473 |
0.309 |
|
| 2009 |
Diallo AB, Badescu D, Blanchette M, Makarenkov V. A whole genome study and identification of specific carcinogenic regions of the human papilloma viruses. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 1461-73. PMID 19754274 DOI: 10.1089/Cmb.2009.0091 |
0.331 |
|
| 2009 |
Mongin E, Dewar K, Blanchette M. Long-range regulation is a major driving force in maintaining genome integrity. Bmc Evolutionary Biology. 9: 203. PMID 19682388 DOI: 10.1186/1471-2148-9-203 |
0.438 |
|
| 2009 |
Hoberman R, Dias J, Ge B, Harmsen E, Mayhew M, Verlaan DJ, Kwan T, Dewar K, Blanchette M, Pastinen T. A probabilistic approach for SNP discovery in high-throughput human resequencing data. Genome Research. 19: 1542-52. PMID 19605794 DOI: 10.1101/Gr.092072.109 |
0.405 |
|
| 2009 |
Cloutier P, Al-Khoury R, Lavallée-Adam M, Faubert D, Jiang H, Poitras C, Bouchard A, Forget D, Blanchette M, Coulombe B. High-resolution mapping of the protein interaction network for the human transcription machinery and affinity purification of RNA polymerase II-associated complexes. Methods (San Diego, Calif.). 48: 381-6. PMID 19450687 DOI: 10.1016/J.Ymeth.2009.05.005 |
0.337 |
|
| 2009 |
Fraser J, Rousseau M, Shenker S, Ferraiuolo MA, Hayashizaki Y, Blanchette M, Dostie J. Chromatin conformation signatures of cellular differentiation. Genome Biology. 10: R37. PMID 19374771 DOI: 10.1186/Gb-2009-10-4-R37 |
0.374 |
|
| 2008 |
Fauteux F, Blanchette M, Strömvik MV. Seeder: discriminative seeding DNA motif discovery. Bioinformatics (Oxford, England). 24: 2303-7. PMID 18718942 DOI: 10.1093/Bioinformatics/Btn444 |
0.372 |
|
| 2008 |
Smith M, Blanchette M, Papadopoulou B. Improving the prediction of mRNA extremities in the parasitic protozoan Leishmania. Bmc Bioinformatics. 9: 158. PMID 18366710 DOI: 10.1186/1471-2105-9-158 |
0.396 |
|
| 2007 |
Jeronimo C, Forget D, Bouchard A, Li Q, Chua G, Poitras C, Thérien C, Bergeron D, Bourassa S, Greenblatt J, Chabot B, Poirier GG, Hughes TR, Blanchette M, Price DH, et al. Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme. Molecular Cell. 27: 262-74. PMID 17643375 DOI: 10.1016/J.Molcel.2007.06.027 |
0.317 |
|
| 2007 |
Diallo AB, Makarenkov V, Blanchette M. Exact and heuristic algorithms for the Indel Maximum Likelihood Problem. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 14: 446-61. PMID 17572023 DOI: 10.1089/Cmb.2007.A006 |
0.407 |
|
| 2007 |
Blin G, Blais E, Hermelin D, Guillon P, Blanchette M, El-Mabrouk N. Gene maps linearization using genomic rearrangement distances. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 14: 394-407. PMID 17572019 DOI: 10.1089/Cmb.2007.A002 |
0.373 |
|
| 2007 |
Blanchette M. Computation and analysis of genomic multi-sequence alignments. Annual Review of Genomics and Human Genetics. 8: 193-213. PMID 17489682 DOI: 10.1146/Annurev.Genom.8.080706.092300 |
0.459 |
|
| 2007 |
Dufour CR, Wilson BJ, Huss JM, Kelly DP, Alaynick WA, Downes M, Evans RM, Blanchette M, Giguère V. Genome-wide orchestration of cardiac functions by the orphan nuclear receptors ERRalpha and gamma. Cell Metabolism. 5: 345-56. PMID 17488637 DOI: 10.1016/J.Cmet.2007.03.007 |
0.323 |
|
| 2007 |
Chen H, Blanchette M. Detecting non-coding selective pressure in coding regions. Bmc Evolutionary Biology. 7: S9. PMID 17288582 DOI: 10.1186/1471-2148-7-S1-S9 |
0.4 |
|
| 2007 |
Ferretti V, Poitras C, Bergeron D, Coulombe B, Robert F, Blanchette M. PReMod: a database of genome-wide mammalian cis-regulatory module predictions. Nucleic Acids Research. 35: D122-6. PMID 17148480 DOI: 10.1093/Nar/Gkl879 |
0.438 |
|
| 2006 |
Ma J, Zhang L, Suh BB, Raney BJ, Burhans RC, Kent WJ, Blanchette M, Haussler D, Miller W. Reconstructing contiguous regions of an ancestral genome. Genome Research. 16: 1557-65. PMID 16983148 DOI: 10.1101/Gr.5383506 |
0.341 |
|
| 2006 |
Chindelevitch L, Li Z, Blais E, Blanchette M. On the inference of parsimonious indel evolutionary scenarios. Journal of Bioinformatics and Computational Biology. 4: 721-44. PMID 16960972 DOI: 10.1142/S0219720006002168 |
0.38 |
|
| 2006 |
Fang F, Blanchette M. FootPrinter3: phylogenetic footprinting in partially alignable sequences. Nucleic Acids Research. 34: W617-20. PMID 16845084 DOI: 10.1093/Nar/Gkl123 |
0.395 |
|
| 2006 |
Blanchette M, Bataille AR, Chen X, Poitras C, Laganière J, Lefèbvre C, Deblois G, Giguère V, Ferretti V, Bergeron D, Coulombe B, Robert F. Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expression. Genome Research. 16: 656-68. PMID 16606704 DOI: 10.1101/Gr.4866006 |
0.429 |
|
| 2005 |
Guillemette B, Bataille AR, Gévry N, Adam M, Blanchette M, Robert F, Gaudreau L. Variant histone H2A.Z is globally localized to the promoters of inactive yeast genes and regulates nucleosome positioning. Plos Biology. 3: e384. PMID 16248679 DOI: 10.1371/Journal.Pbio.0030384 |
0.344 |
|
| 2005 |
Warr MR, Acoca S, Liu Z, Germain M, Watson M, Blanchette M, Wing SS, Shore GC. BH3-ligand regulates access of MCL-1 to its E3 ligase. Febs Letters. 579: 5603-8. PMID 16213503 DOI: 10.1016/J.Febslet.2005.09.028 |
0.317 |
|
| 2004 |
Yang Q, Blanchette M. StructMiner: a tool for alignment and detection of conserved secondary structure. Genome Informatics. International Conference On Genome Informatics. 15: 102-11. PMID 15706496 DOI: 10.11234/Gi1990.15.2_102 |
0.346 |
|
| 2004 |
Blanchette M, Green ED, Miller W, Haussler D. Reconstructing large regions of an ancestral mammalian genome in silico. Genome Research. 14: 2412-23. PMID 15574820 DOI: 10.1101/Gr.2800104 |
0.432 |
|
| 2004 |
Sinha S, Blanchette M, Tompa M. PhyME: a probabilistic algorithm for finding motifs in sets of orthologous sequences. Bmc Bioinformatics. 5: 170. PMID 15511292 DOI: 10.1186/1471-2105-5-170 |
0.411 |
|
| 2004 |
Bejerano G, Haussler D, Blanchette M. Into the heart of darkness: large-scale clustering of human non-coding DNA. Bioinformatics (Oxford, England). 20: i40-8. PMID 15262779 DOI: 10.1093/bioinformatics/bth946 |
0.328 |
|
| 2004 |
Blanchette M, Kent WJ, Riemer C, Elnitski L, Smit AF, Roskin KM, Baertsch R, Rosenbloom K, Clawson H, Green ED, Haussler D, Miller W. Aligning multiple genomic sequences with the threaded blockset aligner. Genome Research. 14: 708-15. PMID 15060014 DOI: 10.1101/Gr.1933104 |
0.423 |
|
| 2003 |
Margulies EH, Blanchette M, Haussler D, Green ED. Identification and characterization of multi-species conserved sequences. Genome Research. 13: 2507-18. PMID 14656959 DOI: 10.1101/Gr.1602203 |
0.461 |
|
| 2003 |
Thomas JW, Touchman JW, Blakesley RW, Bouffard GG, Beckstrom-Sternberg SM, Margulies EH, Blanchette M, Siepel AC, Thomas PJ, McDowell JC, Maskeri B, Hansen NF, Schwartz MS, Weber RJ, Kent WJ, et al. Comparative analyses of multi-species sequences from targeted genomic regions. Nature. 424: 788-93. PMID 12917688 DOI: 10.1038/Nature01858 |
0.46 |
|
| 2003 |
Blanchette M, Tompa M. FootPrinter: A program designed for phylogenetic footprinting. Nucleic Acids Research. 31: 3840-2. PMID 12824433 DOI: 10.1093/Nar/Gkg606 |
0.363 |
|
| 2002 |
Blanchette M, Schwikowski B, Tompa M. Algorithms for phylogenetic footprinting. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 9: 211-23. PMID 12015878 DOI: 10.1089/10665270252935421 |
0.372 |
|
| 2002 |
Blanchette M, Tompa M. Discovery of regulatory elements by a computational method for phylogenetic footprinting. Genome Research. 12: 739-48. PMID 11997340 DOI: 10.1101/Gr.6902 |
0.381 |
|
| 2002 |
Blanchette M, Sinha S. Separating real motifs from their artifacts. Bioinformatics (Oxford, England). S30-8. PMID 11472990 DOI: 10.1093/Bioinformatics/17.Suppl_1.S30 |
0.35 |
|
| 1999 |
Sankoff D, Blanchette M. Phylogenetic invariants for genome rearrangements. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 6: 431-45. PMID 10582577 DOI: 10.1089/106652799318373 |
0.43 |
|
| 1999 |
Blanchette M, Kunisawa T, Sankoff D. Gene order breakpoint evidence in animal mitochondrial phylogeny. Journal of Molecular Evolution. 49: 193-203. PMID 10441671 DOI: 10.1007/Pl00006542 |
0.387 |
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| 1998 |
Sankoff D, Blanchette M. Phylogenetic Invariants for Metazoan Mitochondrial Genome Evolution. Genome Informatics. Workshop On Genome Informatics. 9: 22-31. PMID 11072318 DOI: 10.11234/Gi1990.9.22 |
0.417 |
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| 1998 |
Sankoff D, Blanchette M. Multiple genome rearrangement and breakpoint phylogeny. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 5: 555-70. PMID 9773350 DOI: 10.1089/Cmb.1998.5.555 |
0.416 |
|
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