Saeed Salem, Ph.D. - Publications

2009 Rensselaer Polytechnic Institute, Troy, NY, United States 
Bioinformatics Biology, Computer Science

28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Salem S, Alokshiya M, Hasan MA. RASMA: a reverse search algorithm for mining maximal frequent subgraphs. Biodata Mining. 14: 19. PMID 33726790 DOI: 10.1186/s13040-021-00250-1  0.76
2016 Anderson J, Do H, Salem S. Experience report: Mining test results for reasons other than functional correctness 2015 Ieee 26th International Symposium On Software Reliability Engineering, Issre 2015. 405-415. DOI: 10.1109/ISSRE.2015.7381834  1
2015 Huang X, Jennings SF, Bruce B, Buchan A, Cai L, Chen P, Cramer CL, Guan W, Hilgert UK, Jiang H, Li Z, McClure G, McMullen DF, Nanduri B, Perkins A, ... ... Salem S, et al. Big data - a 21st century science Maginot Line? No-boundary thinking: shifting from the big data paradigm. Biodata Mining. 8: 7. PMID 25670967 DOI: 10.1186/S13040-015-0037-5  1
2015 Wang F, Remke M, Bhat K, Wong ET, Zhou S, Ramaswamy V, Dubuc A, Fonkem E, Salem S, Zhang H, Hsieh TC, O'Rourke ST, Wu L, Li DW, Hawkins C, et al. A microRNA-1280/JAG2 network comprises a novel biological target in high-risk medulloblastoma. Oncotarget. 6: 2709-24. PMID 25576913 DOI: 10.18632/Oncotarget.2779  1
2015 Yocum GD, Rinehart JP, Horvath DP, Kemp WP, Bosch J, Alroobi R, Salem S. Key molecular processes of the diapause to post-diapause quiescence transition in the alfalfa leafcutting bee Megachile rotundata identified by comparative transcriptome analysis Physiological Entomology. 40: 103-112. DOI: 10.1111/Phen.12093  1
2015 Anderson J, Salem S, Do H. Striving for Failure: An Industrial Case Study about Test Failure Prediction Proceedings - International Conference On Software Engineering. 2: 49-58. DOI: 10.1109/ICSE.2015.134  1
2014 Salem S, Ozcaglar C. Hybrid coexpression link similarity graph clustering for mining biological modules from multiple gene expression datasets. Biodata Mining. 7: 16. PMID 25221624 DOI: 10.1186/1756-0381-7-16  1
2014 Mei Y, Su M, Soni G, Salem S, Colbert CL, Sinha SC. Intrinsically disordered regions in autophagy proteins. Proteins. 82: 565-78. PMID 24115198 DOI: 10.1002/Prot.24424  1
2014 Alroobi R, Salem S. Discovering dysregulated phenotype-related gene patterns Acm Bcb 2014 - 5th Acm Conference On Bioinformatics, Computational Biology, and Health Informatics. 524-532. DOI: 10.1145/2649387.2649441  1
2013 Huang X, Bruce B, Buchan A, Congdon CB, Cramer CL, Jennings SF, Jiang H, Li Z, McClure G, McMullen R, Moore JH, Nanduri B, Peckham J, Perkins A, Polson SW, ... ... Salem S, et al. No-boundary thinking in bioinformatics research. Biodata Mining. 6: 19. PMID 24192339 DOI: 10.1186/1756-0381-6-19  1
2013 Salem S, Ozcaglar C. MFMS: Maximal frequent module set mining from multiple human gene expression data sets Proc. of the 12th Int. Workshop On Data Mining in Bioinformatics, Biokdd 2013 - Held in Conjunction With the 19th Acm Sigkdd Int. Conf. On Knowledge Discovery and Data Mining, Sigkdd 2013. 51-57. DOI: 10.1145/2500863.2500869  1
2013 Kahveci T, Salem S, Koyuturk M. Guest editorial for special section on BIOKDD Ieee/Acm Transactions On Computational Biology and Bioinformatics. 10: 1199-1200. DOI: 10.1109/Tcbb.2013.184  1
2012 Ramakrishnan V, Srinivasan SP, Salem SM, Matthews SJ, Colón W, Zaki M, Bystroff C. Geofold: topology-based protein unfolding pathways capture the effects of engineered disulfides on kinetic stability. Proteins. 80: 920-34. PMID 22189917 DOI: 10.1002/Prot.23249  1
2011 Chitraranjan CD, Alnemer L, Al-Azzam O, Salem S, Denton AM, Iqbal MJ, Kianian SF. Frequent substring-based sequence classification with an ensemble of support vector machines trained using reduced amino acid alphabets Proceedings - 10th International Conference On Machine Learning and Applications, Icmla 2011. 2: 180-185. DOI: 10.1109/ICMLA.2011.71  1
2011 Hasan MA, Salem S, Zaki MJ. SimClus: An effective algorithm for clustering with a lower bound on similarity Knowledge and Information Systems. 28: 665-685. DOI: 10.1007/s10115-010-0360-6  1
2010 Salem S, Zaki MJ, Bystroff C. FlexSnap: flexible non-sequential protein structure alignment. Algorithms For Molecular Biology : Amb. 5: 12. PMID 20047669 DOI: 10.1186/1748-7188-5-12  1
2009 Qureshi AH, Chaoji V, Maiguel D, Faridi MH, Barth CJ, Salem SM, Singhal M, Stoub D, Krastins B, Ogihara M, Zaki MJ, Gupta V. Proteomic and phospho-proteomic profile of human platelets in basal, resting state: insights into integrin signaling. Plos One. 4: e7627. PMID 19859549 DOI: 10.1371/Journal.Pone.0007627  1
2009 Salem S, Zaki MJ, Bystroff C. Iterative non-sequential protein structural alignment. Journal of Bioinformatics and Computational Biology. 7: 571-96. PMID 19507290 DOI: 10.1142/S0219720009004205  1
2009 Hasan MA, Chaoji V, Salem S, Zaki MJ. Robust partitional clustering by outlier and density insensitive seeding Pattern Recognition Letters. 30: 994-1002. DOI: 10.1016/J.Patrec.2009.04.013  1
2009 Chaoji V, Al Hasan M, Salem S, Zaki MJ. SPARCL: An effective and efficient algorithm for mining arbitrary shape-based clusters Knowledge and Information Systems. 21: 201-229. DOI: 10.1007/S10115-009-0216-0  1
2009 Hasan MA, Salem S, Pupacdi B, Zaki MJ. Clustering with lower bound on similarity Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5476: 122-133. DOI: 10.1007/978-3-642-01307-2_14  1
2008 Salem S, Zaki MJ. Iterative non-sequential protein structural alignment. Computational Systems Bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference. 7: 183-94. PMID 19642279  1
2008 Chaoji V, Al Hasan M, Salem S, Zaki MJ. SPARCL: Efficient and effective shape-based clustering Proceedings - Ieee International Conference On Data Mining, Icdm. 93-102. DOI: 10.1109/ICDM.2008.73  1
2008 Chaoji V, Al Hasan M, Salem S, Zaki MJ. An integrated, generic approach to pattern mining: Data mining template library Data Mining and Knowledge Discovery. 17: 457-495. DOI: 10.1007/S10618-008-0098-X  1
2008 Chaoji V, Hasan MA, Salem S, Besson J, Zaki MJ. ORIGAMI: A novel and effective approach for mining representative orthogonal graph patterns Statistical Analysis and Data Mining. 1: 67-84. DOI: 10.1002/Sam.V1:2  1
2007 Hasan MA, Chaoji V, Salem S, Besson J, Zaki MJ. ORIGAMI: Mining representative orthogonal graph patterns Proceedings - Ieee International Conference On Data Mining, Icdm. 153-162. DOI: 10.1109/ICDM.2007.45  1
2005 Zaki MJ, Parimi N, De N, Gao F, Phoophakdee B, Urban J, Chaoji V, Al Hasan M, Salem S. Towards generic pattern mining Lecture Notes in Artificial Intelligence (Subseries of Lecture Notes in Computer Science). 3403: 1-20. DOI: 10.1007/11590316_12  1
2005 Zaki MJ, Parimi N, De N, Gao F, Phoophakdee B, Urban J, Chaoji V, Al Hasan M, Salem S. Towards generic pattern mining Lecture Notes in Artificial Intelligence (Subseries of Lecture Notes in Computer Science). 3403: 1-20.  1
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