Haixu Tang - Publications

Affiliations: 
Computer Sciences Indiana University, Bloomington, Bloomington, IN, United States 
Area:
Computer Science, Bioinformatics Biology, Biochemistry

142 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Dong X, Peng W, Yu CY, Zhou S, Donohoo KB, Tang H, Mechref Y. 8-plex LC-MS/MS Analysis of Permethylated N-glycans Achieved by Using Stable Isotopic Iodomethane. Analytical Chemistry. PMID 31356052 DOI: 10.1021/acs.analchem.9b02411  0.56
2019 Niccum BA, Lee H, MohammedIsmail W, Tang H, Foster PL. The Symmetrical Wave Pattern of Base-Pair Substitution Rates across the Escherichia coli Chromosome Has Multiple Causes. Mbio. 10. PMID 31266871 DOI: 10.1128/mBio.01226-19  0.32
2019 Li S, Tang H, Ye Y. A meta-proteogenomic approach to peptide identification incorporating assembly uncertainty and genomic variation. Molecular & Cellular Proteomics : McP. PMID 31142575 DOI: 10.1074/mcp.TIR118.001233  0.72
2019 Misal SA, Li S, Tang H, Radivojac P, Reilly JP. Identification of N-terminal protein processing sites by chemical labeling mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. PMID 30884002 DOI: 10.1002/rcm.8435  0.52
2018 Wang L, Li S, Tang H. msCRUSH: fast tandem mass spectral clustering using locality sensitive hashing. Journal of Proteome Research. PMID 30511858 DOI: 10.1021/acs.jproteome.8b00448  0.72
2018 Wang X, Tang H, Wang S, Jiang X, Wang W, Bu D, Wang L, Jiang Y, Wang C. iDASH secure genome analysis competition 2017. Bmc Medical Genomics. 11: 85. PMID 30309344 DOI: 10.1186/s12920-018-0396-0  0.8
2018 Jiang X, Tang H, Mohammed Ismail W, Lynch M. A maximum-likelihood approach to estimating the insertion frequencies of transposable elements from population sequencing data. Molecular Biology and Evolution. PMID 30099533 DOI: 10.1093/molbev/msy152  0.72
2018 Niccum BA, Lee H, MohammedIsmail W, Tang H, Foster PL. The Spectrum of Replication Errors in the Absence of Error Correction Assayed Across the Whole Genome of . Genetics. PMID 29907648 DOI: 10.1534/genetics.117.300515  0.32
2018 Foster PL, Niccum BA, Popodi E, Townes JP, Lee H, MohammedIsmail W, Tang H. Determinants of Base-Pair Substitution Patterns Revealed by Whole-Genome Sequencing of DNA Mismatch Repair Defective . Genetics. PMID 29907647 DOI: 10.1534/genetics.118.301237  0.32
2018 Bu D, Wang X, Tang H. Real-time Protection of Genomic Data Sharing in Beacon Services. Amia Joint Summits On Translational Science Proceedings. Amia Joint Summits On Translational Science. 2017: 45-54. PMID 29888039  0.8
2018 Zhao Y, Wang X, Tang H. A Secure Alignment Algorithm for Mapping Short Reads to Human Genome. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 29741956 DOI: 10.1089/cmb.2017.0094  0.8
2018 Westphal LL, Lau J, Negro Z, Moreno IJ, Mohammed WI, Lee H, Tang H, Finkel SE, Kram KE. Adaptation of Escherichia coli to long-term batch culture in various rich media. Research in Microbiology. PMID 29454026 DOI: 10.1016/j.resmic.2018.01.003  0.32
2017 Wang W, Chen G, Pan X, Zhang Y, Wang X, Bindschaedler V, Tang H, Gunter CA. Leaky Cauldron on the Dark Land: Understanding Memory Side-Channel Hazards in SGX. Conference On Computer and Communications Security : Proceedings of the ... Conference On Computer and Communications Security. Acm Conference On Computer and Communications Security. 2017: 2421-2434. PMID 30853868 DOI: 10.1145/3133956.3134038  0.8
2017 Lin YY, Gawronski A, Hach F, Li S, Numanagic I, Sarrafi I, Mishra S, McPherson A, Collins C, Radovich M, Tang H, Sahinalp SC. Computational identification of micro-structural variations and their proteogenomic consequences in cancer. Bioinformatics (Oxford, England). PMID 29267878 DOI: 10.1093/bioinformatics/btx807  0.52
2017 Wang S, Jiang X, Tang H, Wang X, Bu D, Carey K, Dyke SO, Fox D, Jiang C, Lauter K, Malin B, Sofia H, Telenti A, Wang L, Wang W, et al. A community effort to protect genomic data sharing, collaboration and outsourcing. Npj Genomic Medicine. 2: 33. PMID 29263842 DOI: 10.1038/s41525-017-0036-1  0.8
2017 Raisaro JL, Tramèr F, Ji Z, Bu D, Zhao Y, Carey K, Lloyd D, Sofia H, Baker D, Flicek P, Shringarpure S, Bustamante C, Wang S, Jiang X, Ohno-Machado L, ... Tang H, et al. Addressing Beacon re-identification attacks: quantification and mitigation of privacy risks. Journal of the American Medical Informatics Association : Jamia. PMID 28339683 DOI: 10.1093/jamia/ocw167  0.8
2017 Kram KE, Geiger C, Ismail WM, Lee H, Tang H, Foster PL, Finkel SE. Adaptation of Escherichia coli to Long-Term Serial Passage in Complex Medium: Evidence of Parallel Evolution. Msystems. 2. PMID 28289732 DOI: 10.1128/mSystems.00192-16  0.36
2017 Jiang X, Tang H, Ye Z, Lynch M. Insertion polymorphisms of mobile genetic elements in sexual and asexual populations of Daphnia pulex. Genome Biology and Evolution. PMID 28057730 DOI: 10.1093/gbe/evw302  0.72
2016 Tang H, Li S, Ye Y. A Graph-Centric Approach for Metagenome-Guided Peptide and Protein Identification in Metaproteomics. Plos Computational Biology. 12: e1005224. PMID 27918579 DOI: 10.1371/journal.pcbi.1005224  0.72
2016 Li S, Tang H. Computational Methods in Mass Spectrometry-Based Proteomics. Advances in Experimental Medicine and Biology. 939: 63-89. PMID 27807744 DOI: 10.1007/978-981-10-1503-8_4  0.52
2016 Tang H, Jiang X, Wang X, Wang S, Sofia H, Fox D, Lauter K, Malin B, Telenti A, Xiong L, Ohno-Machado L. Protecting genomic data analytics in the cloud: state of the art and opportunities. Bmc Medical Genomics. 9: 63. PMID 27733153 DOI: 10.1186/s12920-016-0224-3  0.8
2016 Li S, Dabir A, Misal SA, Tang H, Radivojac P, Reilly JP. The impact of amidination on peptide fragmentation and identification in shotgun proteomics. Journal of Proteome Research. PMID 27615690 DOI: 10.1021/acs.jproteome.6b00468  0.52
2016 Li S, Bandeira N, Wang X, Tang H. On the privacy risks of sharing clinical proteomics data. Amia Joint Summits On Translational Science Proceedings. Amia Joint Summits On Translational Science. 2016: 122-31. PMID 27595046  0.8
2016 Lee H, Doak TG, Popodi E, Foster PL, Tang H. Insertion sequence-caused large-scale rearrangements in the genome of Escherichia coli. Nucleic Acids Research. PMID 27431326 DOI: 10.1093/nar/gkw647  0.64
2016 Tu Y, Tian Y, Fang Z, Ruan Q, Tang H, Zhang X, Wu Y, Ding Y, Cui S. Cytoreductive surgery combined with hyperthermic intraperitoneal chemoperfusion for the treatment of gastric cancer: A single-centre retrospective study. International Journal of Hyperthermia : the Official Journal of European Society For Hyperthermic Oncology, North American Hyperthermia Group. 1-8. PMID 27362668 DOI: 10.1080/02656736.2016.1190987  0.68
2016 Tang H, Wu Y, Liu M, Qin Y, Wang H, Wang L, Li S, Zhu H, He Z, Luo J, Wang H, Wang Q, Luo S. SEMA3B improves the survival of patients with esophageal squamous cell carcinoma by upregulating p53 and p21. Oncology Reports. PMID 27349960 DOI: 10.3892/or.2016.4901  0.44
2016 Zhang Z, Wu YF, Tang H, He Z, Wang LL, Wang QM, Mai L. [CD24 down-regulation in non-small cell lung cancer prolongs patient survival]. Zhonghua Bing Li Xue Za Zhi Chinese Journal of Pathology. 45: 409-10. PMID 27256051  0.36
2016 Lee H, Lee M, Mohammed Ismail W, Rho M, Fox GC, Oh S, Tang H. MGEScan: a Galaxy-based system for identifying retrotransposons in genomes. Bioinformatics (Oxford, England). PMID 27153595 DOI: 10.1093/bioinformatics/btw157  0.96
2016 Yu CY, Mayampurath A, Zhu R, Zacharias L, Song E, Wang L, Mechref Y, Tang H. Automated glycan sequencing from tandem mass spectra of N-linked glycopeptides. Analytical Chemistry. PMID 27111718 DOI: 10.1021/acs.analchem.5b04858  0.72
2016 Ji C, Li S, Reilly JP, Radivojac P, Tang H. XLSearch: a probabilistic database search algorithm for identifying cross-linked peptides. Journal of Proteome Research. PMID 27068484 DOI: 10.1021/acs.jproteome.6b00004  0.96
2016 Song L, Tang H, Liu D, Song J, Wu Y, Qu S, Li Y. The Chronic and Short-Term Effects of Gefinitib on Airway Remodeling and Inflammation in a Mouse Model of Asthma. Cellular Physiology and Biochemistry : International Journal of Experimental Cellular Physiology, Biochemistry, and Pharmacology. 38: 194-206. PMID 26784930 DOI: 10.1159/000438621  0.6
2015 Wu Y, Wang X, Wang C, Sun Q, Song N, Zhou Y, Jiang Q, Qiao Y, Xu J, Liang L, Tang H, Ma J, Gao X, Chen SD. Prevalence and clinical features of non-motor symptoms of essential tremor in Shanghai rural area. Parkinsonism & Related Disorders. PMID 26777409 DOI: 10.1016/j.parkreldis.2015.10.617  0.76
2015 Wu YH, Chiu DT, Lin HR, Tang HY, Cheng ML, Ho HY. Glucose-6-Phosphate Dehydrogenase Enhances Antiviral Response through Downregulation of NADPH Sensor HSCARG and Upregulation of NF-κB Signaling. Viruses. 7: 6689-706. PMID 26694452 DOI: 10.3390/v7122966  0.36
2015 Zhang Y, Yu CY, Song E, Li SC, Mechref Y, Tang H, Liu X. Identification of Glycopeptides with Multiple Hydroxylysine O-Glycosylation Sites by Tandem Mass Spectrometry. Journal of Proteome Research. PMID 26565680 DOI: 10.1021/acs.jproteome.5b00299  0.96
2015 Foster PL, Lee H, Popodi E, Townes JP, Tang H. Determinants of spontaneous mutation in the bacterium Escherichia coli as revealed by whole-genome sequencing. Proceedings of the National Academy of Sciences of the United States of America. PMID 26460006 DOI: 10.1073/pnas.1512136112  0.96
2015 Blevins T, Podicheti R, Mishra V, Marasco M, Wang J, Rusch D, Tang H, Pikaard CS. Identification of Pol IV and RDR2-dependent precursors of 24 nt siRNAs guiding de novo DNA methylation in Arabidopsis. Elife. 4. PMID 26430765 DOI: 10.7554/eLife.09591  0.96
2015 Ye Y, Tang H. Utilizing de Bruijn graph of metagenome assembly for metatranscriptome analysis. Bioinformatics (Oxford, England). PMID 26319390 DOI: 10.1093/bioinformatics/btv510  0.32
2015 Zhou B, Chen Z, Yang Y, Ai W, Tang H, Wu Y, Zhu W, Li Y. Redox-Neutral Rhodium-Catalyzed CH Functionalization of Arylamine N-Oxides with Diazo Compounds: Primary C(sp(3) ) H/C(sp(2) )H Activation and Oxygen-Atom Transfer. Angewandte Chemie (International Ed. in English). PMID 26306429 DOI: 10.1002/anie.201505302  0.36
2015 Zhao Y, Wang X, Tang H. Secure Genomic Computation through Site-Wise Encryption. Amia Joint Summits On Translational Science Proceedings Amia Summit On Translational Science. 2015: 227-31. PMID 26306278  0.8
2015 Jiang QW, Wang C, Zhou Y, Hou MM, Wang X, Tang HD, Wu YW, Ma JF, Chen SD. Plasma epidermal growth factor decreased in the early stage of Parkinson's disease. Aging and Disease. 6: 168-73. PMID 26029474 DOI: 10.14336/AD.2014.0925  0.32
2015 Song E, Hu Y, Hussein A, Yu CY, Tang H, Mechref Y. Characterization of the Glycosylation Site of Human PSA Prompted by Missense Mutation using LC-MS/MS. Journal of Proteome Research. 14: 2872-83. PMID 26022737 DOI: 10.1021/acs.jproteome.5b00362  0.56
2015 Zheng Q, Wu Y, Xu H, Yao Y, Xia X, Feng J, Tang H, Wang H. The effects of dietary oxidized konjac glucomannan and its acidolysis products on the immune response, expression of immune related genes and disease resistance of Schizothorax prenanti. Fish & Shellfish Immunology. 45: 551-9. PMID 25989625 DOI: 10.1016/j.fsi.2015.05.016  0.76
2015 Long H, Kucukyildirim S, Sung W, Williams E, Lee H, Ackerman M, Doak TG, Tang H, Lynch M. Background Mutational Features of the Radiation-Resistant Bacterium Deinococcus radiodurans. Molecular Biology and Evolution. PMID 25976352 DOI: 10.1093/molbev/msv119  0.96
2015 Sheng YJ, Xu JH, Wu YG, Zuo XB, Gao JP, Lin Y, Zhu ZW, Wen LL, Yang C, Liu L, Cheng YY, Chang Y, Yang LL, Zhou FS, Tang XF, ... ... Tang HY, et al. Association analyses confirm five susceptibility loci for systemic lupus erythematosus in the Han Chinese population. Arthritis Research & Therapy. 17: 85. PMID 25890262 DOI: 10.1186/s13075-015-0602-9  0.44
2015 Ruan Q, Fang ZY, Cui SZ, Zhang XL, Wu YB, Tang HS, Tu YN, Ding Y. Thermo-chemotherapy Induced miR-218 upregulation inhibits the invasion of gastric cancer via targeting Gli2 and E-cadherin. Tumour Biology : the Journal of the International Society For Oncodevelopmental Biology and Medicine. PMID 25694126 DOI: 10.1007/s13277-015-3250-4  0.6
2015 He H, Tang H, Gao L, Wu Y, Feng Z, Lin H, Wu T. Tanshinone IIA attenuates bleomycin-induced pulmonary fibrosis in rats. Molecular Medicine Reports. 11: 4190-6. PMID 25672255 DOI: 10.3892/mmr.2015.3333  0.76
2015 Ma J, Jiang Q, Xu J, Sun Q, Qiao Y, Chen W, Wu Y, Wang Y, Xiao Q, Liu J, Tang H, Chen S. Plasma insulin-like growth factor 1 is associated with cognitive impairment in Parkinson's disease. Dementia and Geriatric Cognitive Disorders. 39: 251-6. PMID 25661865 DOI: 10.1159/000371510  0.76
2015 Zheng Y, Wu Y, Tang H. Force measurements of flexible tandem wings in hovering and forward flights. Bioinspiration & Biomimetics. 10: 016021. PMID 25656164 DOI: 10.1088/1748-3190/10/1/016021  0.76
2015 Wu Y, Si R, Tang H, He Z, Zhu H, Wang L, Fan Y, Xia S, He Z, Wang Q. Cholesterol reduces the sensitivity to platinum-based chemotherapy via upregulating ABCG2 in lung adenocarcinoma. Biochemical and Biophysical Research Communications. 457: 614-20. PMID 25603057 DOI: 10.1016/j.bbrc.2015.01.035  0.76
2015 Hu Y, Zhou S, Yu CY, Tang H, Mechref Y. Automated annotation and quantitation of glycans by liquid chromatography/electrospray ionization mass spectrometric analysis using the MultiGlycan-ESI computational tool. Rapid Communications in Mass Spectrometry : Rcm. 29: 135-42. PMID 25462374 DOI: 10.1002/rcm.7093  0.56
2015 Zhao Y, Wang X, Jiang X, Ohno-Machado L, Tang H. Choosing blindly but wisely: differentially private solicitation of DNA datasets for disease marker discovery. Journal of the American Medical Informatics Association : Jamia. 22: 100-8. PMID 25352565 DOI: 10.1136/amiajnl-2014-003043  0.8
2015 Tang Y, Liu X, Su B, Zhang Z, Zeng X, Lei Y, Shan J, Wu Y, Tang H, Su Q. microRNA-22 acts as a metastasis suppressor by targeting metadherin in gastric cancer. Molecular Medicine Reports. 11: 454-60. PMID 25323629 DOI: 10.3892/mmr.2014.2682  0.76
2014 Jiang X, Zhao Y, Wang X, Malin B, Wang S, Ohno-Machado L, Tang H. A community assessment of privacy preserving techniques for human genomes. Bmc Medical Informatics and Decision Making. 14: S1. PMID 25521230 DOI: 10.1186/1472-6947-14-S1-S1  0.96
2014 Song E, Mayampurath A, Yu CY, Tang H, Mechref Y. Glycoproteomics: identifying the glycosylation of prostate specific antigen at normal and high isoelectric points by LC-MS/MS. Journal of Proteome Research. 13: 5570-80. PMID 25327667 DOI: 10.1021/pr500575r  0.56
2014 Ismail WM, Ye Y, Tang H. Gene finding in metatranscriptomic sequences. Bmc Bioinformatics. 15: S8. PMID 25253067 DOI: 10.1186/1471-2105-15-S9-S8  0.72
2014 Chen W, Wu Y, Zhong S, Cheng L, Li Q, Tang H. Anti-neurotoxicity effects of oxoisoaporphine-lipoic acid hybrids. Chemico-Biological Interactions. 223: 45-50. PMID 25234849 DOI: 10.1016/j.cbi.2014.09.005  0.76
2014 Lee MS, Oh S, Tang H. Characterization of microbial associations in human oral microbiome. Bio-Medical Materials and Engineering. 24: 3737-44. PMID 25227089 DOI: 10.3233/BME-141202  0.32
2014 Zhang XL, Shi HJ, Wang JP, Tang HS, Wu YB, Fang ZY, Cui SZ, Wang LT. MicroRNA-218 is upregulated in gastric cancer after cytoreductive surgery and hyperthermic intraperitoneal chemotherapy and increases chemosensitivity to cisplatin. World Journal of Gastroenterology. 20: 11347-55. PMID 25170221 DOI: 10.3748/wjg.v20.i32.11347  0.68
2014 Mayampurath A, Song E, Mathur A, Yu CY, Hammoud Z, Mechref Y, Tang H. Label-free glycopeptide quantification for biomarker discovery in human sera. Journal of Proteome Research. 13: 4821-32. PMID 24946017 DOI: 10.1021/pr500242m  0.56
2014 Tang H, Fu Z, Zhang Y. [Meta-analysis of safety and efficacy on exercise rehabilitation in coronary heart disease patients post revascularization procedure] Zhonghua Xin Xue Guan Bing Za Zhi. 42: 334-340. PMID 24924462  0.44
2014 Tang H, Mayampurath A, Yu CY, Mechref Y. Bioinformatics protocols in glycomics and glycoproteomics. Current Protocols in Protein Science / Editorial Board, John E. Coligan ... [Et Al.]. 76: 2.15.1-7. PMID 24692013 DOI: 10.1002/0471140864.ps0215s76  0.96
2014 Chen CM, Weng YT, Chen WL, Lin TH, Chao CY, Lin CH, Chen IC, Lee LC, Lin HY, Wu YR, Chen YC, Chang KH, Tang HY, Cheng ML, Lee-Chen GJ, et al. Aqueous extract of Glycyrrhiza inflata inhibits aggregation by upregulating PPARGC1A and NFE2L2-ARE pathways in cell models of spinocerebellar ataxia 3. Free Radical Biology & Medicine. 71: 339-50. PMID 24675225 DOI: 10.1016/j.freeradbiomed.2014.03.023  0.36
2014 Blevins T, Pontvianne F, Cocklin R, Podicheti R, Chandrasekhara C, Yerneni S, Braun C, Lee B, Rusch D, Mockaitis K, Tang H, Pikaard CS. A two-step process for epigenetic inheritance in Arabidopsis. Molecular Cell. 54: 30-42. PMID 24657166 DOI: 10.1016/j.molcel.2014.02.019  0.96
2014 Ma F, Feng J, Zhang C, Li Y, Qi G, Li H, Wu Y, Fu Y, Zhao Y, Chen H, Du J, Tang H. The requirement of CD8+ T cells to initiate and augment acute cardiac inflammatory response to high blood pressure. Journal of Immunology (Baltimore, Md. : 1950). 192: 3365-73. PMID 24600037 DOI: 10.4049/jimmunol.1301522  0.76
2014 Lee H, Popodi E, Foster PL, Tang H. Detection of structural variants involving repetitive regions in the reference genome. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 21: 219-33. PMID 24552580 DOI: 10.1089/cmb.2013.0129  0.96
2014 Huang Y, Su L, Cai X, Mai W, Wang S, Hu Y, Wu Y, Tang H, Xu D. Association of all-cause and cardiovascular mortality with prehypertension: a meta-analysis. American Heart Journal. 167: 160-168.e1. PMID 24439976 DOI: 10.1016/j.ahj.2013.10.023  0.56
2014 Tan Z, Jiang H, Wu Y, Xie L, Dai W, Tang H, Tang S. miR-185 is an independent prognosis factor and suppresses tumor metastasis in gastric cancer. Molecular and Cellular Biochemistry. 386: 223-31. PMID 24352663 DOI: 10.1007/s11010-013-1860-y  0.76
2014 Chen TK, Chang CC, Chang HH, Fang AH, Wang CH, Chao WH, Tseng CM, Lee YC, Wu YR, Wen MH, Tang HY, Chen FR, Wang MJ, Wu MK, Van Dyck D. Fe-vacancy order and superconductivity in tetragonal β-Fe1-xSe. Proceedings of the National Academy of Sciences of the United States of America. 111: 63-8. PMID 24351933 DOI: 10.1073/pnas.1321160111  0.48
2014 Deng Y, Hu Q, Yuan Q, Wu Y, Ling Y, Tang H. One-pot synthesis of molecular bottle-brush functionalized single-walled carbon nanotubes with superior dispersibility in water. Macromolecular Rapid Communications. 35: 97-102. PMID 24307218 DOI: 10.1002/marc.201300673  0.76
2014 Mayampurath A, Yu CY, Song E, Balan J, Mechref Y, Tang H. Computational framework for identification of intact glycopeptides in complex samples. Analytical Chemistry. 86: 453-63. PMID 24279413 DOI: 10.1021/ac402338u  0.56
2014 Peterson MP, Rosvall KA, Taylor CA, Lopez JA, Choi JH, Ziegenfus C, Tang H, Colbourne JK, Ketterson ED. Potential for sexual conflict assessed via testosterone-mediated transcriptional changes in liver and muscle of a songbird. The Journal of Experimental Biology. 217: 507-17. PMID 24198265 DOI: 10.1242/jeb.089813  0.96
2014 Wang X, Wang LP, Tang H, Shan WY, Wang X, Liu D, Wu YY, Tian Q, Wang JZ, Zhu LQ. Acetyl-L-carnitine rescues scopolamine-induced memory deficits by restoring insulin-like growth factor II via decreasing p53 oxidation. Neuropharmacology. 76: 80-7. PMID 24012657 DOI: 10.1016/j.neuropharm.2013.08.022  0.8
2013 Li YX, Tang HT, Zhou WF, Hu XY, Xiao SC, Niu XH, Li YC, Wu YS, Yao M, Wang HX, Xia ZF, Zhao JJ. [Analgesic and sedative effects of inhaling a mixture of nitrous oxide and oxygen on burn patient during and after dressing change]. Zhonghua Shao Shang Za Zhi = Zhonghua Shaoshang Zazhi = Chinese Journal of Burns. 29: 537-40. PMID 24495641  0.48
2013 Wu Y, Wu Y, Wu Y, Tang H, Wu H, Zhang G, Wang W. Screening of candidate proteins interacting with IE-2 of Bombyx mori nucleopolyhedrovirus. Molecular Biology Reports. 40: 5797-804. PMID 24078157 DOI: 10.1007/s11033-013-2683-3  0.8
2013 Leymarie N, Griffin PJ, Jonscher K, Kolarich D, Orlando R, McComb M, Zaia J, Aguilan J, Alley WR, Altmann F, Ball LE, Basumallick L, Bazemore-Walker CR, Behnken H, Blank MA, ... ... Tang H, et al. Interlaboratory study on differential analysis of protein glycosylation by mass spectrometry: the ABRF glycoprotein research multi-institutional study 2012. Molecular & Cellular Proteomics : McP. 12: 2935-51. PMID 23764502 DOI: 10.1074/mcp.M113.030643  0.96
2013 Wu Y, Liu F, Tang H, Wang Q, Chen L, Wu H, Zhang X, Miao J, Zhu M, Hu C, Goldsworthy M, You J, Xu X. The analgesic efficacy of subcostal transversus abdominis plane block compared with thoracic epidural analgesia and intravenous opioid analgesia after radical gastrectomy. Anesthesia and Analgesia. 117: 507-13. PMID 23744953 DOI: 10.1213/ANE.0b013e318297fcee  0.76
2013 Xu W, Xu J, Wang Y, Tang H, Deng Y, Ren R, Wang G, Niu W, Ma J, Wu Y, Zheng J, Chen S, Ding J. The genetic variation of SORCS1 is associated with late-onset Alzheimer's disease in Chinese Han population. Plos One. 8: e63621. PMID 23700427 DOI: 10.1371/journal.pone.0063621  0.76
2013 Xue L, Wang P, Wang L, Renzi E, Radivojac P, Tang H, Arnold R, Zhu JK, Tao WA. Quantitative measurement of phosphoproteome response to osmotic stress in arabidopsis based on Library-Assisted eXtracted Ion Chromatogram (LAXIC). Molecular & Cellular Proteomics : McP. 12: 2354-69. PMID 23660473 DOI: 10.1074/mcp.O113.027284  0.96
2013 Wang J, Cui S, Zhang X, Wu Y, Tang H. High expression of heat shock protein 90 is associated with tumor aggressiveness and poor prognosis in patients with advanced gastric cancer. Plos One. 8: e62876. PMID 23638161 DOI: 10.1371/journal.pone.0062876  0.76
2013 Zhang Q, Rho M, Tang H, Doak TG, Ye Y. CRISPR-Cas systems target a diverse collection of invasive mobile genetic elements in human microbiomes. Genome Biology. 14: R40. PMID 23628424 DOI: 10.1186/gb-2013-14-4-r40  0.96
2013 Peterson MP, Rosvall KA, Choi JH, Ziegenfus C, Tang H, Colbourne JK, Ketterson ED. Testosterone affects neural gene expression differently in male and female juncos: a role for hormones in mediating sexual dimorphism and conflict. Plos One. 8: e61784. PMID 23613935 DOI: 10.1371/journal.pone.0061784  0.96
2013 Yu CY, Mayampurath A, Hu Y, Zhou S, Mechref Y, Tang H. Automated annotation and quantification of glycans using liquid chromatography-mass spectrometry. Bioinformatics (Oxford, England). 29: 1706-7. PMID 23610369 DOI: 10.1093/bioinformatics/btt190  0.56
2013 Miller DF, Yan PS, Buechlein A, Rodriguez BA, Yilmaz AS, Goel S, Lin H, Collins-Burow B, Rhodes LV, Braun C, Pradeep S, Rupaimoole R, Dalkilic M, Sood AK, Burow ME, ... Tang H, et al. A new method for stranded whole transcriptome RNA-seq. Methods (San Diego, Calif.). 63: 126-34. PMID 23557989 DOI: 10.1016/j.ymeth.2013.03.023  0.96
2013 Jiao D, Ye Y, Tang H. Probabilistic inference of biochemical reactions in microbial communities from metagenomic sequences. Plos Computational Biology. 9: e1002981. PMID 23555216 DOI: 10.1371/journal.pcbi.1002981  0.72
2013 Foster PL, Hanson AJ, Lee H, Popodi EM, Tang H. On the mutational topology of the bacterial genome. G3 (Bethesda, Md.). 3: 399-407. PMID 23450823 DOI: 10.1534/g3.112.005355  0.96
2013 Mechref Y, Hu Y, Desantos-Garcia JL, Hussein A, Tang H. Quantitative glycomics strategies. Molecular & Cellular Proteomics : McP. 12: 874-84. PMID 23325767 DOI: 10.1074/mcp.R112.026310  0.56
2013 Ji C, Arnold RJ, Sokoloski KJ, Hardy RW, Tang H, Radivojac P. Extending the coverage of spectral libraries: a neighbor-based approach to predicting intensities of peptide fragmentation spectra. Proteomics. 13: 756-65. PMID 23303707 DOI: 10.1002/pmic.201100670  0.96
2013 Yu CY, Mayampurath A, Tang H. Software tools for glycan profiling. Methods in Molecular Biology (Clifton, N.J.). 951: 269-76. PMID 23296537 DOI: 10.1007/978-1-62703-146-2_18  0.96
2012 Li YF, Arnold RJ, Radivojac P, Tang H. Protein identification problem from a Bayesian point of view. Statistics and Its Interface. 5: 21-37. PMID 24761189 DOI: 10.4310/SII.2012.v5.n1.a3  0.96
2012 Lee H, Popodi E, Tang H, Foster PL. Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing. Proceedings of the National Academy of Sciences of the United States of America. 109: E2774-83. PMID 22991466 DOI: 10.1073/pnas.1210309109  0.96
2012 Wierzbicki AT, Cocklin R, Mayampurath A, Lister R, Jordan Rowley M, Gregory BD, Ecker JR, Tang H, Pikaard CS. Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome Genes and Development. 26: 1825-1836. PMID 22855789 DOI: 10.1101/gad.197772.112  0.96
2012 Peterson MP, Whittaker DJ, Ambreth S, Sureshchandra S, Buechlein A, Podicheti R, Choi JH, Lai Z, Mockatis K, Colbourne J, Tang H, Ketterson ED. De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco hyemalis): genomic tools for an ecological model system. Bmc Genomics. 13: 305. PMID 22776250 DOI: 10.1186/1471-2164-13-305  0.96
2012 Rho M, Wu YW, Tang H, Doak TG, Ye Y. Diverse CRISPRs evolving in human microbiomes. Plos Genetics. 8: e1002441. PMID 22719260 DOI: 10.1371/journal.pgen.1002441  0.96
2012 Wang M, Ye Y, Tang H. A de Bruijn graph approach to the quantification of closely-related genomes in a microbial community. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 19: 814-25. PMID 22697249 DOI: 10.1089/cmb.2012.0058  0.72
2012 Lee H, Tang H. Next-generation sequencing technologies and fragment assembly algorithms. Methods in Molecular Biology (Clifton, N.J.). 855: 155-74. PMID 22407708 DOI: 10.1007/978-1-61779-582-4_5  0.32
2012 Mitra I, Zhuang Z, Zhang Y, Yu CY, Hammoud ZT, Tang H, Mechref Y, Jacobson SC. N-glycan profiling by microchip electrophoresis to differentiate disease states related to esophageal adenocarcinoma. Analytical Chemistry. 84: 3621-7. PMID 22397697 DOI: 10.1021/ac203431s  0.96
2012 Sheng Q, Dai J, Wu Y, Tang H, Zeng R. BuildSummary: using a group-based approach to improve the sensitivity of peptide/protein identification in shotgun proteomics. Journal of Proteome Research. 11: 1494-502. PMID 22217156 DOI: 10.1021/pr200194p  0.76
2012 Zhao Y, Tang H, Ye Y. RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data. Bioinformatics (Oxford, England). 28: 125-6. PMID 22039206 DOI: 10.1093/bioinformatics/btr595  0.76
2011 Liu X, Li YF, Bohrer BC, Arnold RJ, Radivojac P, Tang H, Reilly JP. Investigation of VUV Photodissociation Propensities Using Peptide Libraries. International Journal of Mass Spectrometry. 308: 142-154. PMID 22125417 DOI: 10.1016/j.ijms.2011.04.008  0.96
2011 Lai X, Wang L, Tang H, Witzmann FA. A novel alignment method and multiple filters for exclusion of unqualified peptides to enhance label-free quantification using peptide intensity in LC-MS/MS. Journal of Proteome Research. 10: 4799-812. PMID 21888428 DOI: 10.1021/pr2005633  0.72
2011 Mayampurath AM, Wu Y, Segu ZM, Mechref Y, Tang H. Improving confidence in detection and characterization of protein N-glycosylation sites and microheterogeneity. Rapid Communications in Mass Spectrometry : Rcm. 25: 2007-19. PMID 21698683 DOI: 10.1002/rcm.5059  0.96
2011 Ye Y, Choi JH, Tang H. RAPSearch: a fast protein similarity search tool for short reads. Bmc Bioinformatics. 12: 159. PMID 21575167 DOI: 10.1186/1471-2105-12-159  0.72
2011 Colbourne JK, Pfrender ME, Gilbert D, Thomas WK, Tucker A, Oakley TH, Tokishita S, Aerts A, Arnold GJ, Basu MK, Bauer DJ, Cáceres CE, Carmel L, Casola C, Choi JH, ... ... Tang H, et al. The ecoresponsive genome of Daphnia pulex. Science (New York, N.Y.). 331: 555-61. PMID 21292972 DOI: 10.1126/science.1197761  0.96
2011 Cherbas L, Willingham A, Zhang D, Yang L, Zou Y, Eads BD, Carlson JW, Landolin JM, Kapranov P, Dumais J, Samsonova A, Choi JH, Roberts J, Davis CA, Tang H, et al. The transcriptional diversity of 25 Drosophila cell lines. Genome Research. 21: 301-14. PMID 21177962 DOI: 10.1101/gr.112961.110  0.96
2011 Li S, Arnold RJ, Tang H, Radivojac P. On the accuracy and limits of peptide fragmentation spectrum prediction. Analytical Chemistry. 83: 790-6. PMID 21175207 DOI: 10.1021/ac102272r  0.96
2011 Shah N, Tang H, Doak TG, Ye Y. Comparing bacterial communities inferred from 16S rRNA gene sequencing and shotgun metagenomics. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 165-76. PMID 21121044  0.72
2010 Li YF, Arnold RJ, Tang H, Radivojac P. The importance of peptide detectability for protein identification, quantification, and experiment design in MS/MS proteomics. Journal of Proteome Research. 9: 6288-97. PMID 21067214 DOI: 10.1021/pr1005586  0.96
2010 Rho M, Tang H, Ye Y. FragGeneScan: predicting genes in short and error-prone reads. Nucleic Acids Research. 38: e191. PMID 20805240 DOI: 10.1093/nar/gkq747  0.96
2010 Bohrer BC, Li YF, Reilly JP, Clemmer DE, DiMarchi RD, Radivojac P, Tang H, Arnold RJ. Combinatorial libraries of synthetic peptides as a model for shotgun proteomics. Analytical Chemistry. 82: 6559-68. PMID 20669997 DOI: 10.1021/ac100910a  0.96
2010 Rho M, Schaack S, Gao X, Kim S, Lynch M, Tang H. LTR retroelements in the genome of Daphnia pulex. Bmc Genomics. 11: 425. PMID 20618961 DOI: 10.1186/1471-2164-11-425  0.96
2010 Wu Y, Mechref Y, Klouckova I, Mayampurath A, Novotny MV, Tang H. Mapping site-specific protein N-glycosylations through liquid chromatography/mass spectrometry and targeted tandem mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 24: 965-72. PMID 20209665 DOI: 10.1002/rcm.4474  0.96
2010 Hajkova D, Imanishi Y, Palamalai V, Rao KC, Yuan C, Sheng Q, Tang H, Zeng R, Darrow RM, Organisciak DT, Miyagi M. Proteomic changes in the photoreceptor outer segment upon intense light exposure. Journal of Proteome Research. 9: 1173-81. PMID 20020778 DOI: 10.1021/pr900819k  0.96
2009 Rho M, Zhou M, Gao X, Kim S, Tang H, Lynch M. Independent mammalian genome contractions following the KT boundary. Genome Biology and Evolution. 1: 2-12. PMID 20333172 DOI: 10.1093/gbe/evp007  0.96
2009 Rho M, Tang H. MGEScan-non-LTR: computational identification and classification of autonomous non-LTR retrotransposons in eukaryotic genomes. Nucleic Acids Research. 37: e143. PMID 19762481 DOI: 10.1093/nar/gkp752  0.96
2009 Li YF, Arnold RJ, Li Y, Radivojac P, Sheng Q, Tang H. A bayesian approach to protein inference problem in shotgun proteomics. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 1183-93. PMID 19645593 DOI: 10.1089/cmb.2009.0018  0.96
2009 Ye Y, Tang H. An ORFome assembly approach to metagenomics sequences analysis. Journal of Bioinformatics and Computational Biology. 7: 455-71. PMID 19507285  0.72
2009 Shen C, Sheng Q, Dai J, Li Y, Zeng R, Tang H. On the estimation of false positives in peptide identifications using decoy search strategy. Proteomics. 9: 194-204. PMID 19053142 DOI: 10.1002/pmic.200800330  0.6
2008 Ye Y, Tang H. An ORFome assembly approach to metagenomics sequences analysis. Computational Systems Bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference. 7: 3-13. PMID 19642264  0.72
2008 Mann B, Madera M, Sheng Q, Tang H, Mechref Y, Novotny MV. ProteinQuant Suite: a bundle of automated software tools for label-free quantitative proteomics. Rapid Communications in Mass Spectrometry : Rcm. 22: 3823-34. PMID 18985620 DOI: 10.1002/rcm.3781  0.96
2008 Sheng Q, Mechref Y, Li Y, Novotny MV, Tang H. A computational approach to characterizing bond linkages of glycan isomers using matrix-assisted laser desorption/ionization tandem time-of-flight mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. 22: 3561-9. PMID 18853404 DOI: 10.1002/rcm.3765  0.96
2008 Yuan C, Sheng Q, Tang H, Li Y, Zeng R, Solaro RJ. Quantitative comparison of sarcomeric phosphoproteomes of neonatal and adult rat hearts. American Journal of Physiology. Heart and Circulatory Physiology. 295: H647-56. PMID 18552161 DOI: 10.1152/ajpheart.00357.2008  0.6
2008 Saha S, Harrison SH, Shen C, Tang H, Radivojac P, Arnold RJ, Zhang X, Chen JY. HIP2: an online database of human plasma proteins from healthy individuals. Bmc Medical Genomics. 1: 12. PMID 18439290 DOI: 10.1186/1755-8794-1-12  0.76
2008 Choi JH, Kim S, Tang H, Andrews J, Gilbert DG, Colbourne JK. A machine-learning approach to combined evidence validation of genome assemblies Bioinformatics. 24: 744-750. PMID 18204064 DOI: 10.1093/bioinformatics/btm608  0.96
2008 Alves P, Arnold RJ, Clemmer DE, Li Y, Reilly JP, Sheng Q, Tang H, Xun Z, Zeng R, Radivojac P. Fast and accurate identification of semi-tryptic peptides in shotgun proteomics. Bioinformatics (Oxford, England). 24: 102-9. PMID 18033797 DOI: 10.1093/bioinformatics/btm545  0.96
2007 Alves P, Arnold RJ, Novotny MV, Radivojac P, Reilly JP, Tang H. Advancement in protein inference from shotgun proteomics using peptide detectability. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 409-20. PMID 17990506  0.96
2007 Jiang Z, Tang H, Ventura M, Cardone MF, Marques-Bonet T, She X, Pevzner PA, Eichler EE. Ancestral reconstruction of segmental duplications reveals punctuated cores of human genome evolution. Nature Genetics. 39: 1361-8. PMID 17922013 DOI: 10.1038/ng.2007.9  0.96
2007 Tang H. Genome assembly, rearrangement, and repeats. Chemical Reviews. 107: 3391-406. PMID 17636888 DOI: 10.1021/cr0683008  0.96
2007 Bae SH, Tang H, Wu J, Xie J, Kim S. dPattern: transcription factor binding site (TFBS) discovery in human genome using a discriminative pattern analysis. Bioinformatics (Oxford, England). 23: 2619-21. PMID 17550915 DOI: 10.1093/bioinformatics/btm288  0.4
2007 Sundquist A, Ronaghi M, Tang H, Pevzner P, Batzoglou S. Whole-genome sequencing and assembly with high-throughput, short-read technologies. Plos One. 2: e484. PMID 17534434 DOI: 10.1371/journal.pone.0000484  0.96
2007 Rho M, Choi JH, Kim S, Lynch M, Tang H. De novo identification of LTR retrotransposons in eukaryotic genomes Bmc Genomics. 8. PMID 17407597 DOI: 10.1186/1471-2164-8-90  0.96
2007 Zhi D, Keich U, Pevzner P, Heber S, Tang H. Correcting base-assignment errors in repeat regions of shotgun assembly. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 4: 54-64. PMID 17277413 DOI: 10.1109/TCBB.2007.1005  0.96
2006 Arnold RJ, Jayasankar N, Aggarwal D, Tang H, Radivojac P. A machine learning approach to predicting peptide fragmentation spectra. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 219-30. PMID 17094241  0.96
2006 Tang H, Arnold RJ, Alves P, Xun Z, Clemmer DE, Novotny MV, Reilly JP, Radivojac P. A computational approach toward label-free protein quantification using predicted peptide detectability. Bioinformatics (Oxford, England). 22: e481-8. PMID 16873510 DOI: 10.1093/bioinformatics/btl237  0.96
2006 Bafna V, Tang H, Zhang S. Consensus folding of unaligned RNA sequences revisited. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 13: 283-95. PMID 16597240 DOI: 10.1089/cmb.2006.13.283  0.96
2006 Zhi D, Raphael BJ, Price AL, Tang H, Pevzner PA. Identifying repeat domains in large genomes. Genome Biology. 7: R7. PMID 16507140 DOI: 10.1186/gb-2006-7-1-r7  0.96
2005 Tang H, Mechref Y, Novotny MV. Automated interpretation of MS/MS spectra of oligosaccharides. Bioinformatics (Oxford, England). 21: i431-9. PMID 15961488 DOI: 10.1093/bioinformatics/bti1038  0.96
2004 Bandeira N, Tang H, Bafna V, Pevzner P. Shotgun protein sequencing by tandem mass spectra assembly. Analytical Chemistry. 76: 7221-33. PMID 15595863 DOI: 10.1021/ac0489162  0.96
2004 Raphael B, Zhi D, Tang H, Pevzner P. A novel method for multiple alignment of sequences with repeated and shuffled elements. Genome Research. 14: 2336-46. PMID 15520295 DOI: 10.1101/gr.2657504  0.96
2004 Pevzner PA, Pevzner PA, Tang H, Tesler G. De novo repeat classification and fragment assembly. Genome Research. 14: 1786-96. PMID 15342561 DOI: 10.1101/gr.2395204  0.96
2004 Chaisson M, Pevzner P, Tang H. Fragment assembly with short reads. Bioinformatics (Oxford, England). 20: 2067-74. PMID 15059830 DOI: 10.1093/bioinformatics/bth205  0.96
2004 Tu Q, Tang H, Ding D. MedBlast: searching articles related to a biological sequence. Bioinformatics (Oxford, England). 20: 75-7. PMID 14693811  0.36
2002 Heber S, Alekseyev M, Sze SH, Tang H, Pevzner PA. Splicing graphs and EST assembly problem. Bioinformatics (Oxford, England). 18: S181-8. PMID 12169546  0.96
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