| Year |
Citation |
Score |
| 2024 |
Mann AE, Aumend C, Crull S, O'Connell LM, Osagie E, Akhigbe P, Obuekwe O, Omoigberale A, Rowe M, Blouin T, Soule A, Kelly C, Burne RA, Coker MO, Richards VP. HIV Infection and Exposure Increases Cariogenic Taxa, Reduces Taxonomic Turnover, and Homogenizes Spatial Differentiation for the Supragingival Microbiome. Research Square. PMID 39149457 DOI: 10.21203/rs.3.rs-4720457/v1 |
0.56 |
|
| 2024 |
Mann AE, Chakraborty B, O'Connell LM, Nascimento MM, Burne RA, Richards VP. Heterogeneous lineage-specific arginine deiminase expression within dental microbiome species. Microbiology Spectrum. e0144523. PMID 38411054 DOI: 10.1128/spectrum.01445-23 |
0.57 |
|
| 2023 |
O'Connell LM, Mann AE, Osagie E, Akhigbe P, Blouin T, Soule A, Obuekwe O, Omoigberale A, Burne RA, Coker MO, Richards VP. Supragingival mycobiome of HIV-exposed-but-uninfected children reflects a stronger correlation with caries-free-associated taxa compared to HIV-infected or uninfected children. Microbiology Spectrum. e0149123. PMID 37874172 DOI: 10.1128/spectrum.01491-23 |
0.528 |
|
| 2023 |
Mann AE, O'Connell LM, Osagie E, Akhigbe P, Obuekwe O, Omoigberale A, Kelly C, Coker MO, Richards VP. Impact of HIV on the Oral Microbiome of Children Living in Sub-Saharan Africa, Determined by Using an Gene Fragment Metataxonomic Approach. Microbiology Spectrum. e0087123. PMID 37428077 DOI: 10.1128/spectrum.00871-23 |
0.529 |
|
| 2022 |
Hassler HB, Probert B, Moore C, Lawson E, Jackson RW, Russell BT, Richards VP. Phylogenies of the 16S rRNA gene and its hypervariable regions lack concordance with core genome phylogenies. Microbiome. 10: 104. PMID 35799218 DOI: 10.1186/s40168-022-01295-y |
0.302 |
|
| 2022 |
O'Connell LM, Blouin T, Soule A, Burne RA, Nascimento MM, Richards VP. Optimization and Evaluation of the 30S-S11 rRNA Gene for Taxonomic Profiling of Oral Streptococci. Applied and Environmental Microbiology. e0045322. PMID 35730938 DOI: 10.1128/aem.00453-22 |
0.641 |
|
| 2021 |
Coker MO, Akhigbe P, Osagie E, Idemudia NL, Igedegbe O, Chukwumah N, Adebiyi R, Mann AE, O'Connell LM, Obuekwe O, Omoigberale A, Charurat ME, Richards VP. Dental caries and its association with the oral microbiomes and HIV in young children-Nigeria (DOMHaIN): a cohort study. Bmc Oral Health. 21: 620. PMID 34863179 DOI: 10.1186/s12903-021-01944-y |
0.502 |
|
| 2021 |
Richards VP, Nigsch A, Pavinski Bitar P, Sun Q, Stuber T, Ceres K, Smith RL, Robbe Austerman S, Schukken Y, Grohn YT, Stanhope MJ. Evolutionary genomic and bacteria GWAS analysis of subsp. and dairy cattle Johne's disease phenotypes. Applied and Environmental Microbiology. PMID 33547057 DOI: 10.1128/AEM.02570-20 |
0.613 |
|
| 2020 |
Ma X, Agudelo P, Richards VP, Baeza JA. The complete mitochondrial genome of the Columbia lance nematode, Hoplolaimus columbus, a major agricultural pathogen in North America. Parasites & Vectors. 13: 321. PMID 32571423 DOI: 10.1186/S13071-020-04187-Y |
0.367 |
|
| 2020 |
O'Connell LM, Santos R, Springer G, Burne RA, Nascimento MM, Richards VP. Site-specific profiling of the dental mycobiome reveals strong taxonomic shifts during progression of early childhood caries. Applied and Environmental Microbiology. PMID 31953340 DOI: 10.1128/Aem.02825-19 |
0.597 |
|
| 2020 |
CUSHMAN LJ, RICHARDS VP, MCMILLAN PD. Micranthes petiolaris variety shealyi: A New Variety of Micranthes (Section Stellares, Saxifragaceae) from South Carolina Phytotaxa. 452: 124-136. DOI: 10.11646/Phytotaxa.452.2.2 |
0.337 |
|
| 2019 |
Richards VP, Velsko IM, Alam T, Zadoks RN, Manning SD, Pavinski Bitar PD, Hasler HB, Crestani C, Springer G, Probert B, Town CD, Stanhope MJ. Population gene introgression and high genome plasticity for the zoonotic pathogen Streptococcus agalactiae. Molecular Biology and Evolution. PMID 31350563 DOI: 10.1093/Molbev/Msz169 |
0.706 |
|
| 2019 |
Kaspar JR, Godwin MJ, Velsko IM, Richards VP, Burne RA. Spontaneously Arising Variants With Reduced Susceptibility to Chlorhexidine Display Genetic Defects and Diminished Fitness. Antimicrobial Agents and Chemotherapy. PMID 31036688 DOI: 10.1128/Aac.00161-19 |
0.394 |
|
| 2019 |
Velsko IM, Perez MS, Richards VP. Resolving phylogenetic relationships for Streptococcus mitis and Streptococcus oralis through core and pan genome analyses. Genome Biology and Evolution. PMID 30847473 DOI: 10.1093/Gbe/Evz049 |
0.474 |
|
| 2019 |
Marra NJ, Stanhope MJ, Jue NK, Wang M, Sun Q, Pavinski Bitar P, Richards VP, Komissarov A, Rayko M, Kliver S, Stanhope BJ, Winkler C, O'Brien SJ, Antunes A, Jorgensen S, et al. White shark genome reveals ancient elasmobranch adaptations associated with wound healing and the maintenance of genome stability. Proceedings of the National Academy of Sciences of the United States of America. PMID 30782839 DOI: 10.1073/Pnas.1819778116 |
0.746 |
|
| 2018 |
Velsko IM, Chakraborty B, Nascimento MM, Burne RA, Richards VP. Species Designations Belie Phenotypic and Genotypic Heterogeneity in Oral Streptococci. Msystems. 3. PMID 30574560 DOI: 10.1128/mSystems.00158-18 |
0.381 |
|
| 2018 |
Abranches J, Zeng L, Kajfasz JK, Palmer SR, Chakraborty B, Wen ZT, Richards VP, Brady LJ, Lemos JA. Biology of Oral Streptococci. Microbiology Spectrum. 6. PMID 30338752 DOI: 10.1128/Microbiolspec.Gpp3-0042-2018 |
0.352 |
|
| 2018 |
Bernard AM, Richards VP, Stanhope MJ, Shivji MS. Transcriptome derived microsatellites demonstrate strong genetic differentiation in Pacific white sharks. The Journal of Heredity. PMID 30204894 DOI: 10.1093/Jhered/Esy045 |
0.798 |
|
| 2018 |
Chen Y, Hammer EE, Richards VP. Phylogenetic signature of lateral exchange of genes for antibiotic production and resistance among bacteria highlights a pattern of global transmission of pathogens between humans and livestock. Molecular Phylogenetics and Evolution. PMID 29631053 DOI: 10.1016/J.Ympev.2018.03.034 |
0.463 |
|
| 2018 |
Richards VP, DeBiasse MB, Shivji M. Deep mitochondrial lineage divergence among populations of the southern stingray (Hypanus americanus (Hildebrand & Schroeder, 1928)) throughout the Southeastern United States and Caribbean Marine Biodiversity. 49: 1627-1634. DOI: 10.1007/S12526-018-0930-5 |
0.675 |
|
| 2017 |
He J, Kim D, Zhou X, Ahn SJ, Burne RA, Richards VP, Koo H. RNA-Seq Reveals Enhanced Sugar Metabolism in Streptococcus mutans Co-cultured with Candida albicans within Mixed-Species Biofilms. Frontiers in Microbiology. 8: 1036. PMID 28642749 DOI: 10.3389/Fmicb.2017.01036 |
0.394 |
|
| 2017 |
Richards VP, Alvarez AJ, Luce AR, Bedenbaugh M, Mitchell M, Burne RA, Nascimento MM. The microbiome of site-specific dental plaque of children with different caries status. Infection and Immunity. PMID 28507066 DOI: 10.1128/Iai.00106-17 |
0.325 |
|
| 2017 |
Marra NJ, Richards VP, Early A, Bogdanowicz SM, Pavinski Bitar PD, Stanhope MJ, Shivji MS. Comparative transcriptomics of elasmobranchs and teleosts highlight important processes in adaptive immunity and regional endothermy. Bmc Genomics. 18: 87. PMID 28132643 DOI: 10.1186/S12864-016-3411-X |
0.736 |
|
| 2016 |
Jacob AS, Andersen LO, Pavinski Bitar P, Richards VP, Shah S, Stanhope MJ, Stensvold CR, Clark CG. Blastocystis mitochondrial genomes appear to show multiple independent gains and losses of start and stop codons. Genome Biology and Evolution. PMID 27811175 DOI: 10.1093/Gbe/Evw255 |
0.655 |
|
| 2016 |
Palmer A, Painter J, Hassler H, Richards VP, Bruce T, Morrison S, Brown E, Kozak-Muiznieks NA, Lucas C, McNealy TL. Legionella clemsonensis sp. nov., - a green fluorescing Legionella strain from a patient with pneumonia. Microbiology and Immunology. PMID 27619817 DOI: 10.1111/1348-0421.12439 |
0.362 |
|
| 2016 |
Huang X, Palmer S, Ahn SJ, Richards VP, Williams ML, Nascimento MM, Burne RA. Characterization of a highly arginolytic Streptococcus species that potently antagonizes Streptococcus mutans. Applied and Environmental Microbiology. PMID 26826230 DOI: 10.1128/Aem.03887-15 |
0.323 |
|
| 2016 |
DeBiasse MB, Richards VP, Shivji MS, Hellberg ME. Shared phylogeographical breaks in a Caribbean coral reef sponge and its invertebrate commensals Journal of Biogeography. 43: 2136-2146. DOI: 10.1111/Jbi.12785 |
0.601 |
|
| 2016 |
Richards VP, Bernard AM, Feldheim KA, Shivji MS. Patterns of population structure and dispersal in the long-lived “redwood” of the coral reef, the giant barrel sponge (Xestospongia muta) Coral Reefs. 35: 1097-1107. DOI: 10.1007/S00338-016-1435-Y |
0.788 |
|
| 2015 |
Richards VP, Lefébure T, Pavinski Bitar PD, Dogan B, Simpson KW, Schukken YH, Stanhope MJ. Genome based phylogeny and comparative genomic analysis of intra-mammary pathogenic Escherichia coli. Plos One. 10: e0119799. PMID 25807497 DOI: 10.1371/Journal.Pone.0119799 |
0.776 |
|
| 2014 |
Choi SC, Parker J, Richards VP, Ross K, Jilly B, Chen J. Draft Genome Sequence of an Atypical Strain of Streptococcus pneumoniae Isolated from a Respiratory Infection. Genome Announcements. 2. PMID 25125651 DOI: 10.1128/Genomea.00822-14 |
0.378 |
|
| 2014 |
Richards VP, Palmer SR, Pavinski Bitar PD, Qin X, Weinstock GM, Highlander SK, Town CD, Burne RA, Stanhope MJ. Phylogenomics and the dynamic genome evolution of the genus Streptococcus. Genome Biology and Evolution. 6: 741-53. PMID 24625962 DOI: 10.1093/Gbe/Evu048 |
0.683 |
|
| 2014 |
Richards VP, Lefébure T, Pavinski Bitar PD, Stanhope MJ. Corrigendum to "Comparative characterization of the virulence gene clusters (lipooligosacharide [LOS] and capsular polysaccharide [CPS]) for Campylobacter coli, Campylobacter jejuni subsp. jejuni and related Campylobacter species" [Inf. Gen. Evol. 14 (2013) 200-213] Infection, Genetics and Evolution. 21: 506-507. DOI: 10.1016/J.Meegid.2013.12.001 |
0.766 |
|
| 2014 |
Richards VP, DeBiasse MB, Shivji MS. Genetic evidence supports larval retention in the Western Caribbean for an invertebrate with high dispersal capability (Ophiothrix suensonii: Echinodermata, Ophiuroidea) Coral Reefs. 34: 313-325. DOI: 10.1007/S00338-014-1237-Z |
0.655 |
|
| 2013 |
Richards VP, Choi SC, Pavinski Bitar PD, Gurjar AA, Stanhope MJ. Transcriptomic and genomic evidence for Streptococcus agalactiae adaptation to the bovine environment. Bmc Genomics. 14: 920. PMID 24369756 DOI: 10.1186/1471-2164-14-920 |
0.69 |
|
| 2013 |
Richards VP, Greig TW, Fair PA, McCulloch SD, Politz C, Natoli A, Driscoll CA, Hoelzel AR, David V, Bossart GD, Lopez JV. Patterns of population structure for inshore bottlenose dolphins along the eastern United States. The Journal of Heredity. 104: 765-78. PMID 24129993 DOI: 10.1093/Jhered/Est070 |
0.734 |
|
| 2013 |
Richards VP, Suzuki H, Stanhope MJ, Shivji MS. Characterization of the heart transcriptome of the white shark (Carcharodon carcharias). Bmc Genomics. 14: 697. PMID 24112713 DOI: 10.1186/1471-2164-14-697 |
0.754 |
|
| 2013 |
Palmer SR, Miller JH, Abranches J, Zeng L, Lefebure T, Richards VP, Lemos JA, Stanhope MJ, Burne RA. Phenotypic heterogeneity of genomically-diverse isolates of Streptococcus mutans. Plos One. 8: e61358. PMID 23613838 DOI: 10.1371/Journal.Pone.0061358 |
0.797 |
|
| 2013 |
Richards VP, Lefébure T, Pavinski Bitar PD, Stanhope MJ. Comparative characterization of the virulence gene clusters (lipooligosaccharide [LOS] and capsular polysaccharide [CPS]) for Campylobacter coli, Campylobacter jejuni subsp. jejuni and related Campylobacter species. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 14: 200-13. PMID 23279811 DOI: 10.1016/J.Meegid.2012.12.010 |
0.774 |
|
| 2013 |
Cornejo OE, Lefébure T, Bitar PD, Lang P, Richards VP, Eilertson K, Do T, Beighton D, Zeng L, Ahn SJ, Burne RA, Siepel A, Bustamante CD, Stanhope MJ. Evolutionary and population genomics of the cavity causing bacteria Streptococcus mutans. Molecular Biology and Evolution. 30: 881-93. PMID 23228887 DOI: 10.1093/Molbev/Mss278 |
0.811 |
|
| 2013 |
Palmer SR, Miller JH, Abranches J, Zeng L, Lefebure T, Richards VP, Lemos JA, Stanhope MJ, Burne RA. Correction: Phenotypic Heterogeneity of Genomically-Diverse Isolates of Streptococcus mutans Plos One. 8. DOI: 10.1371/Annotation/Ffff8Cd5-B8Fa-4D3C-A993-E5169198F1E6 |
0.759 |
|
| 2012 |
Richards VP, Zadoks RN, Pavinski Bitar PD, Lefébure T, Lang P, Werner B, Tikofsky L, Moroni P, Stanhope MJ. Genome characterization and population genetic structure of the zoonotic pathogen, Streptococcus canis. Bmc Microbiology. 12: 293. PMID 23244770 DOI: 10.1186/1471-2180-12-293 |
0.801 |
|
| 2012 |
Lefébure T, Richards VP, Lang P, Pavinski-Bitar P, Stanhope MJ. Gene repertoire evolution of Streptococcus pyogenes inferred from phylogenomic analysis with Streptococcus canis and Streptococcus dysgalactiae. Plos One. 7: e37607. PMID 22666370 DOI: 10.1371/Journal.Pone.0037607 |
0.779 |
|
| 2012 |
Bernard AM, Feldheim KA, Richards VP, Nemeth RS, Shivji MS. Development and characterization of fifteen novel microsatellite loci for the Nassau grouper (Epinephelus striatus) and their utility for cross-amplification on a suite of closely related species Conservation Genetics Resources. 4: 983-986. DOI: 10.1007/S12686-012-9688-4 |
0.776 |
|
| 2012 |
Richards VP, Stanhope MJ, Shivji MS. Island endemism, morphological stasis, and possible cryptic speciation in two coral reef, commensal Leucothoid amphipod species throughout Florida and the Caribbean Biodiversity and Conservation. 21: 343-361. DOI: 10.1007/S10531-011-0186-X |
0.76 |
|
| 2011 |
Richards VP, Lang P, Bitar PD, Lefébure T, Schukken YH, Zadoks RN, Stanhope MJ. Comparative genomics and the role of lateral gene transfer in the evolution of bovine adapted Streptococcus agalactiae. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 11: 1263-75. PMID 21536150 DOI: 10.1016/J.Meegid.2011.04.019 |
0.793 |
|
| 2010 |
Feldheim KA, Chapman DD, Simpfendorfer CA, Richards VP, Shivji MS, Wiley TR, Poulakis GR, Carlson JK, Eng R, Sagarese S. Genetic tools to support the conservation of the endangered smalltooth sawfish, Pristis pectinata Conservation Genetics Resources. 2: 105-113. DOI: 10.1007/S12686-010-9175-8 |
0.737 |
|
| 2009 |
Smith WD, Bizzarro JJ, Richards VP, Nielsen J, Márquez-Flarías F, Shivji MS. Morphometric convergence and molecular divergence: the taxonomic status and evolutionary history of Gymnura crebripunctata and Gymnura marmorata in the eastern Pacific Ocean. Journal of Fish Biology. 75: 761-83. PMID 20738578 DOI: 10.1111/J.1095-8649.2009.02300.X |
0.648 |
|
| 2009 |
Richards VP, Henning M, Witzell W, Shivji MS. Species delineation and evolutionary history of the globally distributed spotted eagle ray (Aetobatus narinari). The Journal of Heredity. 100: 273-83. PMID 19304741 DOI: 10.1093/Jhered/Esp005 |
0.669 |
|
| 2009 |
DeBiasse MB, Richards VP, Shivji MS. Genetic assessment of connectivity in the common reef sponge, Callyspongia vaginalis (Demospongiae: Haplosclerida) reveals high population structure along the Florida reef tract Coral Reefs. 29: 47-55. DOI: 10.1007/S00338-009-0554-0 |
0.673 |
|
| 2007 |
Richards VP, Thomas JD, Stanhope MJ, Shivji MS. Genetic connectivity in the Florida reef system: comparative phylogeography of commensal invertebrates with contrasting reproductive strategies. Molecular Ecology. 16: 139-57. PMID 17181727 DOI: 10.1111/J.1365-294X.2006.03145.X |
0.75 |
|
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