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Lluís Ribas de Pouplana - Publications

Affiliations: 
IRB Barcelona 
Area:
tRNA biology, Genetic code evolution, Gene translation biomedicine
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41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Alvarez-Carreño C, Arciniega M, Ribas de Pouplana L, Petrov AS, Hernández-González A, Valencia-Sánchez MI, Williams LD, Torres-Larios A. Common evolutionary origins of the bacterial glycyl tRNA synthetase and alanyl tRNA synthetase. Protein Science : a Publication of the Protein Society. e4844. PMID 38009704 DOI: 10.1002/pro.4844  0.409
2023 de Potter B, Vallee I, Camacho N, Filipe Costa Póvoas L, Bonsembiante A, Pons I Pons A, Eckhard U, Gomis-Rüth FX, Yang XL, Schimmel P, Kuhle B, Ribas de Pouplana L. Domain collapse and active site ablation generate a widespread animal mitochondrial seryl-tRNA synthetase. Nucleic Acids Research. PMID 37638745 DOI: 10.1093/nar/gkad696  0.569
2023 Lucas MC, Pryszcz LP, Medina R, Milenkovic I, Camacho N, Marchand V, Motorin Y, Ribas de Pouplana L, Novoa EM. Quantitative analysis of tRNA abundance and modifications by nanopore RNA sequencing. Nature Biotechnology. PMID 37024678 DOI: 10.1038/s41587-023-01743-6  0.311
2021 Torres AG, Rodríguez-Escribà M, Marcet-Houben M, Santos Vieira HG, Camacho N, Catena H, Murillo Recio M, Rafels-Ybern À, Reina O, Torres FM, Pardo-Saganta A, Gabaldón T, Novoa EM, Ribas de Pouplana L. Human tRNAs with inosine 34 are essential to efficiently translate eukarya-specific low-complexity proteins. Nucleic Acids Research. PMID 34125917 DOI: 10.1093/nar/gkab461  0.434
2019 Torres AG, Reina O, Stephan-Otto Attolini C, Ribas de Pouplana L. Differential expression of human tRNA genes drives the abundance of tRNA-derived fragments. Proceedings of the National Academy of Sciences of the United States of America. PMID 30962382 DOI: 10.1073/pnas.1821120116  0.314
2019 Roura Frigolé H, Camacho N, Castellví Coma M, Fernández-Lozano C, García-Lema J, Rafels-Ybern À, Canals A, Coll M, Ribas de Pouplana L. tRNA deamination by ADAT requires substrate-specific recognition mechanisms and can be inhibited by tRFs. Rna (New York, N.Y.). PMID 30737359 DOI: 10.1261/rna.068189.118  0.376
2018 Rafels-Ybern À, Torres AG, Camacho N, Herencia-Ropero A, Roura Frigolé H, Wulff TF, Raboteg M, Bordons A, Grau-Bove X, Ruiz-Trillo I, Ribas de Pouplana L. The expansion of Inosine at the wobble position of tRNAs, and its role in the evolution of proteomes. Molecular Biology and Evolution. PMID 30590541 DOI: 10.1093/Molbev/Msy245  0.376
2017 Ribas de Pouplana L, Torres AG, Rafels-Ybern À. What Froze the Genetic Code? Life (Basel, Switzerland). 7. PMID 28379164 DOI: 10.3390/life7020014  0.301
2016 Saint-Léger A, Bello C, Dans PD, Torres AG, Novoa EM, Camacho N, Orozco M, Kondrashov FA, Ribas de Pouplana L. Saturation of recognition elements blocks evolution of new tRNA identities. Science Advances. 2: e1501860. PMID 27386510 DOI: 10.1126/Sciadv.1501860  0.38
2015 Liu Z, Vargas-Rodriguez O, Goto Y, Novoa EM, Ribas de Pouplana L, Suga H, Musier-Forsyth K. Homologous trans-editing factors with broad tRNA specificity prevent mistranslation caused by serine/threonine misactivation. Proceedings of the National Academy of Sciences of the United States of America. 112: 6027-32. PMID 25918376 DOI: 10.1073/Pnas.1423664112  0.624
2015 Novoa EM, Vargas-Rodriguez O, Lange S, Goto Y, Suga H, Musier-Forsyth K, Ribas de Pouplana L. Ancestral AlaX editing enzymes for control of genetic code fidelity are not tRNA-specific. The Journal of Biological Chemistry. 290: 10495-503. PMID 25724653 DOI: 10.1074/Jbc.M115.640060  0.672
2014 Torres AG, Piñeyro D, Filonava L, Stracker TH, Batlle E, Ribas de Pouplana L. A-to-I editing on tRNAs: biochemical, biological and evolutionary implications. Febs Letters. 588: 4279-86. PMID 25263703 DOI: 10.1016/j.febslet.2014.09.025  0.324
2013 Khan S, Garg A, Sharma A, Camacho N, Picchioni D, Saint-Léger A, Ribas de Pouplana L, Yogavel M, Sharma A. An appended domain results in an unusual architecture for malaria parasite tryptophanyl-tRNA synthetase. Plos One. 8: e66224. PMID 23776638 DOI: 10.1371/journal.pone.0066224  0.368
2013 Jones TE, Ribas de Pouplana L, Alexander RW. Evidence for late resolution of the aux codon box in evolution. The Journal of Biological Chemistry. 288: 19625-32. PMID 23696642 DOI: 10.1074/jbc.M112.449249  0.674
2013 Mateus DD, Paredes JA, Español Y, Ribas de Pouplana L, Moura GR, Santos MA. Molecular reconstruction of a fungal genetic code alteration. Rna Biology. 10: 969-80. PMID 23619021 DOI: 10.4161/rna.24683  0.35
2010 Guitart T, Leon Bernardo T, Sagalés J, Stratmann T, Bernués J, Ribas de Pouplana L. New aminoacyl-tRNA synthetase-like protein in insecta with an essential mitochondrial function. The Journal of Biological Chemistry. 285: 38157-66. PMID 20870726 DOI: 10.1074/jbc.M110.167486  0.364
2008 Jones TE, Brown CL, Geslain R, Alexander RW, Ribas de Pouplana L. An operational RNA code for faithful assignment of AUG triplets to methionine. Molecular Cell. 29: 401-7. PMID 18280245 DOI: 10.1016/j.molcel.2007.12.021  0.697
2004 Geslain R, Ribas de Pouplana L. Regulation of RNA function by aminoacylation and editing? Trends in Genetics : Tig. 20: 604-10. PMID 15522455 DOI: 10.1016/j.tig.2004.09.012  0.323
2004 Beebe K, Merriman E, Ribas De Pouplana L, Schimmel P. A domain for editing by an archaebacterial tRNA synthetase. Proceedings of the National Academy of Sciences of the United States of America. 101: 5958-63. PMID 15079065 DOI: 10.1073/Pnas.0401530101  0.595
2004 Swairjo MA, Otero FJ, Yang XL, Lovato MA, Skene RJ, McRee DE, Ribas de Pouplana L, Schimmel P. Alanyl-tRNA synthetase crystal structure and design for acceptor-stem recognition. Molecular Cell. 13: 829-41. PMID 15053876 DOI: 10.1016/S1097-2765(04)00126-1  0.69
2003 Yang XL, Otero FJ, Skene RJ, McRee DE, Schimmel P, Ribas de Pouplana L. Crystal structures that suggest late development of genetic code components for differentiating aromatic side chains. Proceedings of the National Academy of Sciences of the United States of America. 100: 15376-80. PMID 14671330 DOI: 10.1073/Pnas.2136794100  0.578
2003 Beebe K, Ribas De Pouplana L, Schimmel P. Elucidation of tRNA-dependent editing by a class II tRNA synthetase and significance for cell viability. The Embo Journal. 22: 668-75. PMID 12554667 DOI: 10.1093/Emboj/Cdg065  0.595
2001 Schimmel P, Ribas de Pouplana L. Formation of two classes of tRNA synthetases in relation to editing functions and genetic code. Cold Spring Harbor Symposia On Quantitative Biology. 66: 161-6. PMID 12762018 DOI: 10.1101/Sqb.2001.66.161  0.528
2001 Ribas de Pouplana L, Brown JR, Schimmel P. Structure-based phylogeny of class IIa tRNA synthetases in relation to an unusual biochemistry. Journal of Molecular Evolution. 53: 261-8. PMID 11675586 DOI: 10.1007/S002390010216  0.545
2001 Ribas de Pouplana L, Schimmel P. Aminoacyl-tRNA synthetases: potential markers of genetic code development. Trends in Biochemical Sciences. 26: 591-6. PMID 11590011 DOI: 10.1016/S0968-0004(01)01932-6  0.579
2001 Ribas de Pouplana L, Schimmel P. Two classes of tRNA synthetases suggested by sterically compatible dockings on tRNA acceptor stem. Cell. 104: 191-3. PMID 11269237 DOI: 10.1016/S0092-8674(01)00204-5  0.424
2001 Ribas de Pouplana L, Schimmel P. Operational RNA code for amino acids in relation to genetic code in evolution. The Journal of Biological Chemistry. 276: 6881-4. PMID 11238440 DOI: 10.1074/Jbc.R000032200  0.515
2000 Chihade JW, Brown JR, Schimmel PR, Ribas De Pouplana L. Origin of mitochondria in relation to evolutionary history of eukaryotic alanyl-tRNA synthetase. Proceedings of the National Academy of Sciences of the United States of America. 97: 12153-7. PMID 11035802 DOI: 10.1073/Pnas.220388797  0.691
2000 Ribas de Pouplana L, Schimmel P. A view into the origin of life: aminoacyl-tRNA synthetases. Cellular and Molecular Life Sciences : Cmls. 57: 865-70. PMID 10950302 DOI: 10.1007/Pl00000729  0.45
2000 Schimmel P, Ribas De Pouplana L. Footprints of aminoacyl-tRNA synthetases are everywhere. Trends in Biochemical Sciences. 25: 207-9. PMID 10782085 DOI: 10.1016/S0968-0004(00)01553-X  0.568
1999 Schimmel P, Ribas de Pouplana L. Genetic code origins: experiments confirm phylogenetic predictions and may explain a puzzle. Proceedings of the National Academy of Sciences of the United States of America. 96: 327-8. PMID 9892630 DOI: 10.1073/Pnas.96.2.327  0.476
1998 Ribas de Pouplana L, Turner RJ, Steer BA, Schimmel P. Genetic code origins: tRNAs older than their synthetases? Proceedings of the National Academy of Sciences of the United States of America. 95: 11295-300. PMID 9736730 DOI: 10.1073/Pnas.95.19.11295  0.59
1998 Ribas de Pouplana L, Buechter D, Sardesai NY, Schimmel P. Functional analysis of peptide motif for RNA microhelix binding suggests new family of RNA-binding domains. The Embo Journal. 17: 5449-57. PMID 9736622 DOI: 10.1093/Emboj/17.18.5449  0.506
1997 Ribas de Pouplana L, Schimmel P. Reconstruction of quaternary structures of class II tRNA synthetases by rational mutagenensis of a conserved domain. Biochemistry. 36: 15041-8. PMID 9398230 DOI: 10.1021/Bi971788+  0.525
1997 Nair S, Ribas de Pouplana L, Houman F, Avruch A, Shen X, Schimmel P. Species-specific tRNA recognition in relation to tRNA synthetase contact residues. Journal of Molecular Biology. 269: 1-9. PMID 9192996 DOI: 10.1006/Jmbi.1997.1025  0.54
1996 Ribas de Pouplana L, Auld DS, Kim S, Schimmel P. A mechanism for reducing entropic cost of induced fit in protein--RNA recognition. Biochemistry. 35: 8095-102. PMID 8679560 DOI: 10.1021/Bi960256A  0.456
1996 Ribas de Pouplana L, Frugier M, Quinn CL, Schimmel P. Evidence that two present-day components needed for the genetic code appeared after nucleated cells separated from eubacteria. Proceedings of the National Academy of Sciences of the United States of America. 93: 166-70. PMID 8552597 DOI: 10.1073/Pnas.93.1.166  0.565
1995 Schimmel P, Ribas de Pouplana L. Transfer RNA: from minihelix to genetic code. Cell. 81: 983-6. PMID 7600584 DOI: 10.1016/S0092-8674(05)80002-9  0.483
1994 Kim S, Ribas de Pouplana L, Schimmel P. An RNA binding site in a tRNA synthetase with a reduced set of amino acids. Biochemistry. 33: 11040-5. PMID 7522052 DOI: 10.1021/Bi00202A025  0.558
1993 Ribas de Pouplana L, Buechter DD, Davis MW, Schimmel P. Idiographic representation of conserved domain of a class II tRNA synthetase of unknown structure. Protein Science : a Publication of the Protein Society. 2: 2259-62. PMID 8298469 DOI: 10.1002/Pro.5560021225  0.523
1993 Kim S, Ribas de Pouplana L, Schimmel P. Diversified sequences of peptide epitope for same-RNA recognition. Proceedings of the National Academy of Sciences of the United States of America. 90: 10046-50. PMID 7694278 DOI: 10.1073/Pnas.90.21.10046  0.526
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