| Year |
Citation |
Score |
| 2022 |
Vaishnav ED, de Boer CG, Molinet J, Yassour M, Fan L, Adiconis X, Thompson DA, Levin JZ, Cubillos FA, Regev A. The evolution, evolvability and engineering of gene regulatory DNA. Nature. 603: 455-463. PMID 35264797 DOI: 10.1038/s41586-022-04506-6 |
0.377 |
|
| 2013 |
Haas BJ, Papanicolaou A, Yassour M, Grabherr M, Blood PD, Bowden J, Couger MB, Eccles D, Li B, Lieber M, Macmanes MD, Ott M, Orvis J, Pochet N, Strozzi F, et al. De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. Nature Protocols. 8: 1494-512. PMID 23845962 DOI: 10.1038/Nprot.2013.084 |
0.628 |
|
| 2012 |
Brar GA, Yassour M, Friedman N, Regev A, Ingolia NT, Weissman JS. High-resolution view of the yeast meiotic program revealed by ribosome profiling. Science (New York, N.Y.). 335: 552-7. PMID 22194413 DOI: 10.1126/Science.1215110 |
0.571 |
|
| 2011 |
Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, Adiconis X, Fan L, Raychowdhury R, Zeng Q, Chen Z, Mauceli E, Hacohen N, Gnirke A, Rhind N, et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nature Biotechnology. 29: 644-52. PMID 21572440 DOI: 10.1038/Nbt.1883 |
0.635 |
|
| 2011 |
Rhind N, Chen Z, Yassour M, Thompson DA, Haas BJ, Habib N, Wapinski I, Roy S, Lin MF, Heiman DI, Young SK, Furuya K, Guo Y, Pidoux A, Chen HM, et al. Comparative functional genomics of the fission yeasts. Science (New York, N.Y.). 332: 930-6. PMID 21511999 DOI: 10.1126/Science.1203357 |
0.595 |
|
| 2010 |
Yassour M, Pfiffner J, Levin JZ, Adiconis X, Gnirke A, Nusbaum C, Thompson DA, Friedman N, Regev A. Strand-specific RNA sequencing reveals extensive regulated long antisense transcripts that are conserved across yeast species. Genome Biology. 11: R87. PMID 20796282 DOI: 10.1186/Gb-2010-11-8-R87 |
0.642 |
|
| 2010 |
Levin JZ, Yassour M, Adiconis X, Nusbaum C, Thompson DA, Friedman N, Gnirke A, Regev A. Comprehensive comparative analysis of strand-specific RNA sequencing methods. Nature Methods. 7: 709-15. PMID 20711195 DOI: 10.1038/Nmeth.1491 |
0.593 |
|
| 2010 |
Kim TS, Liu CL, Yassour M, Holik J, Friedman N, Buratowski S, Rando OJ. RNA polymerase mapping during stress responses reveals widespread nonproductive transcription in yeast. Genome Biology. 11: R75. PMID 20637075 DOI: 10.1186/Gb-2010-11-7-R75 |
0.617 |
|
| 2010 |
Weiner A, Hughes A, Yassour M, Rando OJ, Friedman N. High-resolution nucleosome mapping reveals transcription-dependent promoter packaging. Genome Research. 20: 90-100. PMID 19846608 DOI: 10.1101/Gr.098509.109 |
0.603 |
|
| 2009 |
Yassour M, Kaplan T, Fraser HB, Levin JZ, Pfiffner J, Adiconis X, Schroth G, Luo S, Khrebtukova I, Gnirke A, Nusbaum C, Thompson DA, Friedman N, Regev A. Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing. Proceedings of the National Academy of Sciences of the United States of America. 106: 3264-9. PMID 19208812 DOI: 10.1073/Pnas.0812841106 |
0.64 |
|
| 2008 |
Yassour M, Kaplan T, Jaimovich A, Friedman N. Nucleosome positioning from tiling microarray data. Bioinformatics (Oxford, England). 24: i139-46. PMID 18586706 DOI: 10.1093/bioinformatics/btn151 |
0.596 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2021 |
Barak N, Ben-Ami R, Sido T, Perri A, Shtoyer A, Rivkin M, Licht T, Peretz A, Magenheim J, Fogel I, Livneh A, Daitch Y, Oiknine-Djian E, Benedek G, Dor Y, ... ... Yassour M, et al. Lessons from applied large-scale pooling of 133,816 SARS-CoV-2 RT-PCR tests. Science Translational Medicine. PMID 33619081 DOI: 10.1126/scitranslmed.abf2823 |
0.184 |
|
| 2018 |
Shields-Cutler RR, Al-Ghalith GA, Yassour M, Knights D. SplinectomeR Enables Group Comparisons in Longitudinal Microbiome Studies. Frontiers in Microbiology. 9: 785. PMID 29740416 DOI: 10.3389/Fmicb.2018.00785 |
0.175 |
|
| 2018 |
Vatanen T, Plichta DR, Somani J, Münch PC, Arthur TD, Hall AB, Rudolf S, Oakeley EJ, Ke X, Young RA, Haiser HJ, Kolde R, Yassour M, Luopajärvi K, Siljander H, et al. Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life. Nature Microbiology. PMID 30559407 DOI: 10.1038/S41564-018-0321-5 |
0.175 |
|
| 2018 |
Graham DB, Luo C, O'Connell DJ, Lefkovith A, Brown EM, Yassour M, Varma M, Abelin JG, Conway KL, Jasso GJ, Matar CG, Carr SA, Xavier RJ. Antigen discovery and specification of immunodominance hierarchies for MHCII-restricted epitopes. Nature Medicine. PMID 30349087 DOI: 10.1038/S41591-018-0203-7 |
0.175 |
|
| 2016 |
Yassour M, Vatanen T, Siljander H, Hämäläinen AM, Härkönen T, Ryhänen SJ, Franzosa EA, Vlamakis H, Huttenhower C, Gevers D, Lander ES, Knip M, Xavier RJ. Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability. Science Translational Medicine. 8: 343ra81. PMID 27306663 DOI: 10.1126/Scitranslmed.Aad0917 |
0.165 |
|
| 2023 |
Kennedy KM, de Goffau MC, Perez-Muñoz ME, Arrieta MC, Bäckhed F, Bork P, Braun T, Bushman FD, Dore J, de Vos WM, Earl AM, Eisen JA, Elovitz MA, Ganal-Vonarburg SC, Gänzle MG, ... ... Yassour M, et al. Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies. Nature. 613: 639-649. PMID 36697862 DOI: 10.1038/s41586-022-05546-8 |
0.159 |
|
| 2019 |
Vatanen T, Plichta DR, Somani J, Münch PC, Arthur TD, Hall AB, Rudolf S, Oakeley EJ, Ke X, Young RA, Haiser HJ, Kolde R, Yassour M, Luopajärvi K, Siljander H, et al. Publisher Correction: Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life. Nature Microbiology. PMID 30723264 DOI: 10.1038/S41564-019-0393-X |
0.158 |
|
| 2021 |
Blaser MJ, Devkota S, McCoy KD, Relman DA, Yassour M, Young VB. Lessons learned from the prenatal microbiome controversy. Microbiome. 9: 8. PMID 33436098 DOI: 10.1186/s40168-020-00946-2 |
0.156 |
|
| 2024 |
Merav L, Ofek Shlomai N, Oiknine-Djian E, Caplan O, Livneh A, Sido T, Peri A, Shtoyer A, Amir E, Ben Meir K, Daitch Y, Rivkin M, Kripper E, Fogel I, Horowitz H, ... ... Yassour M, et al. Implementation of pooled saliva tests for universal screening of cCMV infection. Nature Medicine. PMID 38459181 DOI: 10.1038/s41591-024-02873-3 |
0.12 |
|
| 2024 |
Ennis D, Shmorak S, Jantscher-Krenn E, Yassour M. Longitudinal quantification of Bifidobacterium longum subsp. infantis reveals late colonization in the infant gut independent of maternal milk HMO composition. Nature Communications. 15: 894. PMID 38291346 DOI: 10.1038/s41467-024-45209-y |
0.12 |
|
| 2024 |
Kijner S, Ennis D, Shmorak S, Florentin A, Yassour M. CRISPR-Cas-based identification of a sialylated human milk oligosaccharides utilization cluster in the infant gut commensal Bacteroides dorei. Nature Communications. 15: 105. PMID 38167825 DOI: 10.1038/s41467-023-44437-y |
0.12 |
|
| 2023 |
Hayashi A, Ruppo S, Heilbrun EE, Mazzoni C, Adar S, Yassour M, Rmaileh AA, Shaul YD. GENI: A web server to identify gene set enrichments in tumor samples. Computational and Structural Biotechnology Journal. 21: 5531-5537. PMID 38034403 DOI: 10.1016/j.csbj.2023.10.053 |
0.12 |
|
| 2022 |
Kijner S, Kolodny O, Yassour M. Human milk oligosaccharides and the infant gut microbiome from an eco-evolutionary perspective. Current Opinion in Microbiology. 68: 102156. PMID 35598464 DOI: 10.1016/j.mib.2022.102156 |
0.12 |
|
| 2022 |
Ennis D, Moriel N, Yassour M. Preemies going pro: How probiotic treatment matures the microbiome of extreme premature infants. Cell Host & Microbe. 30: 599-600. PMID 35550660 DOI: 10.1016/j.chom.2022.04.011 |
0.12 |
|
| 2022 |
Vorontsov O, Levitt L, Lilleri D, Vainer GW, Kaplan O, Schreiber L, Arossa A, Spinillo A, Furione M, Alfi O, Oiknine-Djian E, Kupervaser M, Nevo Y, Elgavish S, Yassour M, et al. Amniotic fluid biomarkers predict the severity of congenital cytomegalovirus infection. The Journal of Clinical Investigation. 132. PMID 35439172 DOI: 10.1172/JCI157415 |
0.12 |
|
| 2022 |
Kijner S, Cher A, Yassour M. The Infant Gut Commensal Presents a Generalized Transcriptional Response to Various Human Milk Oligosaccharides. Frontiers in Cellular and Infection Microbiology. 12: 854122. PMID 35372092 DOI: 10.3389/fcimb.2022.854122 |
0.12 |
|
| 2021 |
Moskovitz M, Nassar M, Moriel N, Cher A, Faibis S, Ram D, Zangen D, Yassour M, Steinberg D. Characterization of the Oral Microbiome Among Children With Type 1 Diabetes Compared With Healthy Children. Frontiers in Microbiology. 12: 756808. PMID 34777313 DOI: 10.3389/fmicb.2021.756808 |
0.12 |
|
| 2024 |
Cern A, Skoczen SL, Snapp KS, Hod A, Zilbersheid D, Bavli Y, Alon-Maimon T, Bachrach G, Wei X, Berman B, Yassour M, Cedrone E, Neun BW, Dobrovolskaia MA, Clogston JD, et al. Nano-mupirocin as tumor-targeted antibiotic: Physicochemical, immunotoxicological and pharmacokinetic characterization, and effect on gut microbiome. Journal of Controlled Release : Official Journal of the Controlled Release Society. PMID 39038544 DOI: 10.1016/j.jconrel.2024.07.045 |
0.09 |
|
| 2022 |
Dahan E, Martin VM, Yassour M. EasyMap - An Interactive Web Tool for Evaluating and Comparing Associations of Clinical Variables and Microbiome Composition. Frontiers in Cellular and Infection Microbiology. 12: 854164. PMID 35646745 DOI: 10.3389/fcimb.2022.854164 |
0.084 |
|
| 2018 |
Yassour M, Jason E, Hogstrom LJ, Arthur TD, Tripathi S, Siljander H, Selvenius J, Oikarinen S, Hyöty H, Virtanen SM, Ilonen J, Ferretti P, Pasolli E, Tett A, Asnicar F, et al. Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life. Cell Host & Microbe. 24: 146-154.e4. PMID 30001517 DOI: 10.1016/J.Chom.2018.06.007 |
0.069 |
|
| 2022 |
Vatanen T, Jabbar KS, Ruohtula T, Honkanen J, Avila-Pacheco J, Siljander H, Stražar M, Oikarinen S, Hyöty H, Ilonen J, Mitchell CM, Yassour M, Virtanen SM, Clish CB, Plichta DR, et al. Mobile genetic elements from the maternal microbiome shape infant gut microbial assembly and metabolism. Cell. 185: 4921-4936.e15. PMID 36563663 DOI: 10.1016/j.cell.2022.11.023 |
0.069 |
|
| 2020 |
Mitchell CM, Mazzoni C, Hogstrom L, Bryant A, Bergerat A, Cher A, Pochan S, Herman P, Carrigan M, Sharp K, Huttenhower C, Lander ES, Vlamakis H, Xavier RJ, Yassour M. Delivery Mode Affects Stability of Early Infant Gut Microbiota. Cell Reports. Medicine. 1: 100156. PMID 33377127 DOI: 10.1016/j.xcrm.2020.100156 |
0.065 |
|
| 2014 |
Gevers D, Kugathasan S, Denson LA, Vázquez-Baeza Y, Van Treuren W, Ren B, Schwager E, Knights D, Song SJ, Yassour M, Morgan XC, Kostic AD, Luo C, González A, McDonald D, et al. The treatment-naive microbiome in new-onset Crohn's disease. Cell Host & Microbe. 15: 382-92. PMID 24629344 DOI: 10.1016/J.Chom.2014.02.005 |
0.056 |
|
| 2016 |
Yassour M, Lim MY, Yun HS, Tickle TL, Sung J, Song YM, Lee K, Franzosa EA, Morgan XC, Gevers D, Lander ES, Xavier RJ, Birren BW, Ko G, Huttenhower C. Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes. Genome Medicine. 8: 17. PMID 26884067 DOI: 10.1186/S13073-016-0271-6 |
0.052 |
|
| 2018 |
Ferretti P, Pasolli E, Tett A, Asnicar F, Gorfer V, Fedi S, Armanini F, Truong DT, Manara S, Zolfo M, Beghini F, Bertorelli R, De Sanctis V, Bariletti I, Canto R, ... ... Yassour M, et al. Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome. Cell Host & Microbe. 24: 133-145.e5. PMID 30001516 DOI: 10.1016/J.Chom.2018.06.005 |
0.048 |
|
| 2017 |
Hall AB, Yassour M, Sauk J, Garner A, Jiang X, Arthur T, Lagoudas GK, Vatanen T, Fornelos N, Wilson R, Bertha M, Cohen M, Garber J, Khalili H, Gevers D, et al. A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients. Genome Medicine. 9: 103. PMID 29183332 DOI: 10.1186/S13073-017-0490-5 |
0.045 |
|
| 2022 |
Martin VM, Virkud YV, Dahan E, Seay HL, Itzkovits D, Vlamakis H, Xavier R, Shreffler WG, Yuan Q, Yassour M. Longitudinal disease-associated gut microbiome differences in infants with food protein-induced allergic proctocolitis. Microbiome. 10: 154. PMID 36138438 DOI: 10.1186/s40168-022-01322-y |
0.037 |
|
| 2023 |
Bar O, Sudhof LS, Yockey LJ, Bergerat A, Moriel N, Andrews E, Ananthakrishnan AN, Xavier RJ, Yassour M, Mitchell CM. Comparison of vaginal microbiota between women with inflammatory bowel disease and healthy controls. Plos One. 18: e0284709. PMID 38019873 DOI: 10.1371/journal.pone.0284709 |
0.021 |
|
| 2016 |
Vatanen T, Kostic AD, d'Hennezel E, Siljander H, Franzosa EA, Yassour M, Kolde R, Vlamakis H, Arthur TD, Hämäläinen AM, Peet A, Tillmann V, Uibo R, Mokurov S, Dorshakova N, et al. Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans. Cell. PMID 27133167 DOI: 10.1016/J.Cell.2016.04.007 |
0.019 |
|
| 2016 |
Vatanen T, Kostic AD, d'Hennezel E, Siljander H, Franzosa EA, Yassour M, Kolde R, Vlamakis H, Arthur TD, Hämäläinen AM, Peet A, Tillmann V, Uibo R, Mokurov S, Dorshakova N, et al. Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans. Cell. 165: 1551. PMID 27259157 DOI: 10.1016/j.cell.2016.05.056 |
0.01 |
|
| Hide low-probability matches. |