Ilya Chorny, Ph.D. - Publications

Affiliations: 
2003 University of California, Santa Cruz, Santa Cruz, CA, United States 
Area:
computational chemistry, molecular dynamics

18/36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2014 Sharma VK, Patapoff TW, Kabakoff B, Pai S, Hilario E, Zhang B, Li C, Borisov O, Kelley RF, Chorny I, Zhou JZ, Dill KA, Swartz TE. In silico selection of therapeutic antibodies for development: viscosity, clearance, and chemical stability. Proceedings of the National Academy of Sciences of the United States of America. 111: 18601-6. PMID 25512516 DOI: 10.1073/Pnas.1421779112  0.373
2013 Kortkhonjia E, Brandman R, Zhou JZ, Voelz VA, Chorny I, Kabakoff B, Patapoff TW, Dill KA, Swartz TE. Probing antibody internal dynamics with fluorescence anisotropy and molecular dynamics simulations. Mabs. 5: 306-22. PMID 23396076 DOI: 10.4161/Mabs.23651  0.431
2012 Butterfoss GL, Yoo B, Jaworski JN, Chorny I, Dill KA, Zuckermann RN, Bonneau R, Kirshenbaum K, Voelz VA. De novo structure prediction and experimental characterization of folded peptoid oligomers. Proceedings of the National Academy of Sciences of the United States of America. 109: 14320-5. PMID 22908242 DOI: 10.1073/Pnas.1209945109  0.341
2011 Voelz VA, Dill KA, Chorny I. Peptoid conformational free energy landscapes from implicit-solvent molecular simulations in AMBER. Biopolymers. 96: 639-50. PMID 21184487 DOI: 10.1002/Bip.21575  0.406
2010 Kortkhonjia E, Brandman R, Chorny I, Kissman J, Patapoff T, Kabakoff B, Dill K, Swartz T. Solution Dynamics of Monoclonal Antibodies: Experimental and Computational Approach Biophysical Journal. 98: 443a. DOI: 10.1016/J.Bpj.2009.12.2406  0.339
2009 Ho JD, Yeh R, Sandstrom A, Chorny I, Harries WE, Robbins RA, Miercke LJ, Stroud RM. Crystal structure of human aquaporin 4 at 1.8 A and its mechanism of conductance. Proceedings of the National Academy of Sciences of the United States of America. 106: 7437-42. PMID 19383790 DOI: 10.1073/Pnas.0902725106  0.367
2007 Mandell DJ, Chorny I, Groban ES, Wong SE, Levine E, Rapp CS, Jacobson MP. Strengths of hydrogen bonds involving phosphorylated amino acid side chains. Journal of the American Chemical Society. 129: 820-7. PMID 17243818 DOI: 10.1021/Ja063019W  0.301
2005 Chorny I, Benjamin I. Hydration shell exchange dynamics during ion transfer across the liquid/liquid interface. The Journal of Physical Chemistry. B. 109: 16455-62. PMID 16853092 DOI: 10.1021/Jp051836X  0.618
2005 Chorny I, Dill KA, Jacobson MP. Surfaces affect ion pairing. The Journal of Physical Chemistry. B. 109: 24056-60. PMID 16375397 DOI: 10.1021/Jp055043M  0.32
2004 Chorny I, Benjamin I, Nathanson GM. Scattering, trapping, and ionization of HCl at the surface of liquid glycerol Journal of Physical Chemistry B. 108: 995-1002. DOI: 10.1021/Jp035825K  0.637
2004 Chorny I, Benjamin I. Molecular dynamics study of the vibrational relaxation of OCl and OCl - in the bulk and the surface of water and acetonitrile Journal of Molecular Liquids. 110: 133-139. DOI: 10.1016/J.Molliq.2003.09.008  0.7
2003 Winter N, Chorny I, Vieceli J, Benjamin I. Molecular dynamics study of the photodissociation and photoisomerization of ICN in water Journal of Chemical Physics. 119: 2127-2143. DOI: 10.1063/1.1585019  0.758
2003 Chorny I, Vieceli J, Benjamin I. Photodissociation and vibrational relaxation of OClO at liquid surfaces Journal of Physical Chemistry B. 107: 229-236. DOI: 10.1021/Jp021796M  0.795
2002 Vieceli J, Chorny I, Benjamin I. Vibrational relaxation at water surfaces Journal of Chemical Physics. 117: 4532-4541. DOI: 10.1063/1.1497633  0.792
2002 Chorny I, Vieceli J, Benjamin I. Molecular dynamics study of the vibrational relaxation of OClO in bulk liquids Journal of Chemical Physics. 116: 8904-8911. DOI: 10.1063/1.1471558  0.791
2002 Chorny I, Vieceli J, Benjamin I. Molecular dynamics study of the photodissociation of OClO in bulk liquids Journal of Chemical Physics. 116: 8930-8937. DOI: 10.1063/1.1471557  0.788
2002 Vieceli J, Chorny I, Benjamin I. Vibrational relaxation of ICN bulk and surface chloroform Chemical Physics Letters. 364: 446-453. DOI: 10.1016/S0009-2614(02)01352-0  0.782
2001 Vieceli J, Chorny I, Benjamin I. Photodissociation of ICN at the liquid/vapor interface of chloroform Journal of Chemical Physics. 115: 4819-4828. DOI: 10.1063/1.1388196  0.752
Low-probability matches (unlikely to be authored by this person)
2004 Ruddat VC, Mogul R, Chorny I, Chen C, Perrin N, Whitman S, Kenyon V, Jacobson MP, Bernasconi CF, Holman TR. Tryptophan 500 and arginine 707 define product and substrate active site binding in soybean lipoxygenase-1 Biochemistry. 43: 13063-13071. PMID 15476400 DOI: 10.1021/Bi0489098  0.231
2013 Raczy C, Petrovski R, Saunders CT, Chorny I, Kruglyak S, Margulies EH, Chuang HY, Källberg M, Kumar SA, Liao A, Little KM, Strömberg MP, Tanner SW. Isaac: ultra-fast whole-genome secondary analysis on Illumina sequencing platforms. Bioinformatics (Oxford, England). 29: 2041-3. PMID 23736529 DOI: 10.1093/Bioinformatics/Btt314  0.207
2006 Kenyon V, Chorny I, Carvajal WJ, Holman TR, Jacobson MP. Novel human lipoxygenase inhibitors discovered using virtual screening with homology models Journal of Medicinal Chemistry. 49: 1356-1363. PMID 16480270 DOI: 10.1021/Jm050639J  0.204
2015 Greninger AL, Chorny I, Knowles S, Ng VL, Chaturvedi V. Draft Genome Sequences of Four NDM-1-Producing Klebsiella pneumoniae Strains from a Health Care Facility in Northern California. Genome Announcements. 3. PMID 25977423 DOI: 10.1128/Genomea.00421-15  0.18
2023 McCleary-Wheeler AL, Fiaux PC, Flesner BK, Ruiz-Perez CA, McLennan LM, Tynan JA, Hicks SC, Rafalko JM, Grosu DS, Chibuk J, O'Kell AL, Cohen TA, Chorny I, Tsui DWY, Kruglyak KM, et al. Next-generation sequencing-based liquid biopsy may be used for detection of residual disease and cancer recurrence monitoring in dogs. American Journal of Veterinary Research. 1-8. PMID 38150822 DOI: 10.2460/ajvr.23.07.0163  0.15
2023 O'Kell AL, Lytle KM, Cohen TA, Wong LK, Sandford E, Rafalko JM, Brandstetter G, DiMarzio LR, Phelps-Dunn A, Rosentel MC, Warren CD, McCleary-Wheeler AL, Fiaux PC, Marass F, Marshall MA, ... ... Chorny I, et al. Clinical experience with next-generation sequencing-based liquid biopsy testing for cancer detection in dogs: a review of 1,500 consecutive clinical cases. Journal of the American Veterinary Medical Association. 1-10. PMID 36965477 DOI: 10.2460/javma.22.11.0526  0.133
2021 Kruglyak KM, Chibuk J, McLennan L, Nakashe P, Hernandez GE, Motalli-Pepio R, Fath DM, Tynan JA, Holtvoigt LE, Chorny I, Grosu DS, Tsui DWY, Flory A. Blood-Based Liquid Biopsy for Comprehensive Cancer Genomic Profiling Using Next-Generation Sequencing: An Emerging Paradigm for Non-invasive Cancer Detection and Management in Dogs. Frontiers in Veterinary Science. 8: 704835. PMID 34307538 DOI: 10.3389/fvets.2021.704835  0.099
2023 Kruglyak KM, O'Kell AL, Cohen TA, Marshall MA, Ruiz-Perez CA, Marass F, Tynan JA, Hicks SC, Lytle KM, Phelps-Dunn A, Brandstetter G, Warren CD, DiMarzio LR, Rosentel MC, Wong LK, ... ... Chorny I, et al. Detection of Age-Related Somatic Alterations in Canine Blood Using Next-Generation Sequencing-Based Liquid Biopsy: An Analysis of over 4800 Dogs. Veterinary Sciences. 10. PMID 37505860 DOI: 10.3390/vetsci10070455  0.098
2021 Chibuk J, Flory A, Kruglyak KM, Leibman N, Nahama A, Dharajiya N, van den Boom D, Jensen TJ, Friedman JS, Shen MR, Clemente-Vicario F, Chorny I, Tynan JA, Lytle KM, Holtvoigt LE, et al. Horizons in Veterinary Precision Oncology: Fundamentals of Cancer Genomics and Applications of Liquid Biopsy for the Detection, Characterization, and Management of Cancer in Dogs. Frontiers in Veterinary Science. 8: 664718. PMID 33834049 DOI: 10.3389/fvets.2021.664718  0.097
2022 Flory A, Kruglyak KM, Tynan JA, McLennan LM, Rafalko JM, Fiaux PC, Hernandez GE, Marass F, Nakashe P, Ruiz-Perez CA, Fath DM, Jennings T, Motalli-Pepio R, Wotrang K, McCleary-Wheeler AL, ... ... Chorny I, et al. Clinical validation of a next-generation sequencing-based multi-cancer early detection "liquid biopsy" blood test in over 1,000 dogs using an independent testing set: The CANcer Detection in Dogs (CANDiD) study. Plos One. 17: e0266623. PMID 35471999 DOI: 10.1371/journal.pone.0266623  0.089
2024 Flory A, Ruiz-Perez CA, Clavere-Graciette AG, Rafalko JM, O'Kell AL, Flesner BK, McLennan LM, Hicks SC, Nakashe P, Phelps-Dunn A, DiMarzio LR, Warren CD, Cohen TA, Chibuk J, Chorny I, et al. Clinical validation of a blood-based liquid biopsy test integrating cell-free DNA quantification and next-generation sequencing for cancer screening in dogs. Journal of the American Veterinary Medical Association. 1-9. PMID 38324993 DOI: 10.2460/javma.23.10.0564  0.08
1999 Pruneau D, Chorny I, Benkovitz V, Artru A, Roitblat L, Shapira Y. Effect of LF 16-0687MS, a new nonpeptide bradykinin B2 receptor antagonist, in a rat model of closed head trauma. Journal of Neurotrauma. 16: 1057-65. PMID 10595822  0.079
2023 Flory A, McLennan L, Peet B, Kroll M, Stuart D, Brown D, Stuebner K, Phillips B, Coomber BL, Woods JP, Miller M, Tripp CD, Wolf-Ringwall A, Kruglyak KM, McCleary-Wheeler AL, ... ... Chorny I, et al. Cancer detection in clinical practice and using blood-based liquid biopsy: A retrospective audit of over 350 dogs. Journal of Veterinary Internal Medicine. PMID 36661398 DOI: 10.1111/jvim.16616  0.068
1999 Chorny I, Bsorai R, Artru AA, Talmor D, Benkoviz V, Roytblat L, Shapira Y. Albumin or hetastarch improves neurological outcome and decreases volume of brain tissue necrosis but not brain edema following closed-head trauma in rats. Journal of Neurosurgical Anesthesiology. 11: 273-81. PMID 10527147  0.049
2023 Rafalko JM, Kruglyak KM, McCleary-Wheeler AL, Goyal V, Phelps-Dunn A, Wong LK, Warren CD, Brandstetter G, Rosentel MC, DiMarzio L, McLennan LM, O'Kell AL, Cohen TA, Grosu DS, Chibuk J, ... ... Chorny I, et al. Age at cancer diagnosis by breed, weight, sex, and cancer type in a cohort of more than 3,000 dogs: Determining the optimal age to initiate cancer screening in canine patients. Plos One. 18: e0280795. PMID 36724177 DOI: 10.1371/journal.pone.0280795  0.034
2004 Klein M, Weksler N, Kaplan DM, Weksler D, Chorny I, Gurman GM. Emergency percutaneous tracheostomy is feasable in experienced hands. European Journal of Emergency Medicine : Official Journal of the European Society For Emergency Medicine. 11: 108-12. PMID 15028902  0.032
2013 Lowenthal MN, Chorny I, Tishchenko L. Questionable eponyms: paraparesis and rhabdomyolysis. The Israel Medical Association Journal : Imaj. 15: 526. PMID 24340852  0.01
2013 Lowenthal MN, Chorny I, Tishchenko L. Questionable eponyms: Paraparesis and rhabdomyo lysis Israel Medical Association Journal. 15: 594.  0.01
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