| Year |
Citation |
Score |
| 2024 |
Madeira F, Madhusoodanan N, Lee J, Eusebi A, Niewielska A, Tivey ARN, Lopez R, Butcher S. The EMBL-EBI Job Dispatcher sequence analysis tools framework in 2024. Nucleic Acids Research. PMID 38597606 DOI: 10.1093/nar/gkae241 |
0.41 |
|
| 2022 |
Madeira F, Pearce M, Tivey ARN, Basutkar P, Lee J, Edbali O, Madhusoodanan N, Kolesnikov A, Lopez R. Search and sequence analysis tools services from EMBL-EBI in 2022. Nucleic Acids Research. PMID 35412617 DOI: 10.1093/nar/gkac240 |
0.437 |
|
| 2021 |
Cummins C, Ahamed A, Aslam R, Burgin J, Devraj R, Edbali O, Gupta D, Harrison PW, Haseeb M, Holt S, Ibrahim T, Ivanov E, Jayathilaka S, Kadhirvelu V, Kay S, ... ... Lopez R, et al. The European Nucleotide Archive in 2021. Nucleic Acids Research. PMID 34850158 DOI: 10.1093/nar/gkab1051 |
0.34 |
|
| 2020 |
Drysdale R, Cook CE, Petryszak R, Baillie-Gerritsen V, Barlow M, Gasteiger E, Gruhl F, Haas J, Lanfear J, Lopez R, Redaschi N, Stockinger H, Teixeira D, Venkatesan A, et al. The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences. Bioinformatics (Oxford, England). PMID 31950984 DOI: 10.1093/Bioinformatics/Btz959 |
0.339 |
|
| 2019 |
Ison J, Ienasescu H, Chmura P, Rydza E, Ménager H, Kalaš M, Schwämmle V, Grüning B, Beard N, Lopez R, Duvaud S, Stockinger H, Persson B, Vařeková RS, Raček T, et al. The bio.tools registry of software tools and data resources for the life sciences. Genome Biology. 20: 164. PMID 31405382 DOI: 10.1186/S13059-019-1772-6 |
0.376 |
|
| 2019 |
Madeira F, Madhusoodanan N, Lee J, Tivey ARN, Lopez R. Using EMBL-EBI Services via Web Interface and Programmatically via Web Services. Current Protocols in Bioinformatics. e74. PMID 31039604 DOI: 10.1002/cpbi.74 |
0.349 |
|
| 2019 |
Madeira F, Park YM, Lee J, Buso N, Gur T, Madhusoodanan N, Basutkar P, Tivey ARN, Potter SC, Finn RD, Lopez R. The EMBL-EBI search and sequence analysis tools APIs in 2019. Nucleic Acids Research. PMID 30976793 DOI: 10.1093/Nar/Gkz268 |
0.521 |
|
| 2018 |
Cook CE, Lopez R, Stroe O, Cochrane G, Brooksbank C, Birney E, Apweiler R. The European Bioinformatics Institute in 2018: tools, infrastructure and training. Nucleic Acids Research. PMID 30445657 DOI: 10.1093/Nar/Gky1124 |
0.472 |
|
| 2018 |
Mitchell AL, Attwood TK, Babbitt PC, Blum M, Bork P, Bridge A, Brown SD, Chang HY, El-Gebali S, Fraser MI, Gough J, Haft DR, Huang H, Letunic I, Lopez R, et al. InterPro in 2019: improving coverage, classification and access to protein sequence annotations. Nucleic Acids Research. PMID 30398656 DOI: 10.1093/Nar/Gky1100 |
0.484 |
|
| 2018 |
Potter SC, Luciani A, Eddy SR, Park Y, Lopez R, Finn RD. HMMER web server: 2018 update. Nucleic Acids Research. PMID 29905871 DOI: 10.1093/Nar/Gky448 |
0.523 |
|
| 2017 |
Perez-Riverol Y, Bai M, da Veiga Leprevost F, Squizzato S, Park YM, Haug K, Carroll AJ, Spalding D, Paschall J, Wang M, Del-Toro N, Ternent T, Zhang P, Buso N, Bandeira N, ... ... Lopez R, et al. Discovering and linking public omics data sets using the Omics Discovery Index. Nature Biotechnology. 35: 406-409. PMID 28486464 DOI: 10.1038/Nbt.3790 |
0.331 |
|
| 2017 |
Park YM, Squizzato S, Buso N, Gur T, Lopez R. The EBI search engine: EBI search as a service-making biological data accessible for all. Nucleic Acids Research. PMID 28472374 DOI: 10.1093/Nar/Gkx359 |
0.47 |
|
| 2017 |
Chojnacki S, Cowley A, Lee J, Foix A, Lopez R. Programmatic access to bioinformatics tools from EMBL-EBI update: 2017. Nucleic Acids Research. PMID 28431173 DOI: 10.1093/Nar/Gkx273 |
0.446 |
|
| 2016 |
Pearson WR, Li W, Lopez R. Query-seeded iterative sequence similarity searching improves selectivity 5-20-fold. Nucleic Acids Research. PMID 27923999 DOI: 10.1093/Nar/Gkw1207 |
0.412 |
|
| 2016 |
Finn RD, Attwood TK, Babbitt PC, Bateman A, Bork P, Bridge AJ, Chang HY, Dosztányi Z, El-Gebali S, Fraser M, Gough J, Haft D, Holliday GL, Huang H, Huang X, ... ... Lopez R, et al. InterPro in 2017-beyond protein family and domain annotations. Nucleic Acids Research. PMID 27899635 DOI: 10.1093/Nar/Gkw1107 |
0.455 |
|
| 2016 |
Durinx C, McEntyre J, Appel R, Apweiler R, Barlow M, Blomberg N, Cook C, Gasteiger E, Kim JH, Lopez R, Redaschi N, Stockinger H, Teixeira D, Valencia A. Identifying ELIXIR Core Data Resources. F1000research. 5. PMID 27803796 DOI: 10.12688/F1000Research.9656.1 |
0.394 |
|
| 2016 |
Kalaš M, Gundersen S, Kaján L, Ménager H, Ison J, Blanchet C, Pettifer S, Lopez R, Rapacki K, Jonassen I. BioXSD | BioJSON | BioYAML – towards unified formats for sequences, alignments, features, and annotations F1000research. 5. DOI: 10.7490/F1000Research.1113048.1 |
0.37 |
|
| 2015 |
Squizzato S, Park YM, Buso N, Gur T, Cowley A, Li W, Uludag M, Pundir S, Cham JA, McWilliam H, Lopez R. The EBI Search engine: providing search and retrieval functionality for biological data from EMBL-EBI. Nucleic Acids Research. 43: W585-8. PMID 25855807 DOI: 10.1093/Nar/Gkv316 |
0.467 |
|
| 2015 |
Li W, Cowley A, Uludag M, Gur T, McWilliam H, Squizzato S, Park YM, Buso N, Lopez R. The EMBL-EBI bioinformatics web and programmatic tools framework. Nucleic Acids Research. 43: W580-4. PMID 25845596 DOI: 10.1093/Nar/Gkv279 |
0.504 |
|
| 2015 |
Mitchell A, Chang HY, Daugherty L, Fraser M, Hunter S, Lopez R, McAnulla C, McMenamin C, Nuka G, Pesseat S, Sangrador-Vegas A, Scheremetjew M, Rato C, Yong SY, Bateman A, et al. The InterPro protein families database: the classification resource after 15 years. Nucleic Acids Research. 43: D213-21. PMID 25428371 DOI: 10.1093/Nar/Gku1243 |
0.463 |
|
| 2015 |
Silvester N, Alako B, Amid C, Cerdeño-Tárraga A, Cleland I, Gibson R, Goodgame N, Ten Hoopen P, Kay S, Leinonen R, Li W, Liu X, Lopez R, Pakseresht N, Pallreddy S, et al. Content discovery and retrieval services at the European Nucleotide Archive. Nucleic Acids Research. 43: D23-9. PMID 25404130 DOI: 10.1093/Nar/Gku1129 |
0.49 |
|
| 2015 |
Kalaš M, Gundersen S, Kaján L, Ison J, Pettifer S, Blanchet C, Lopez R, Rapacki K, Jonassen I. BioXSD — a data model for sequences, alignments, features, measured and inferred values F1000research. 4. DOI: 10.7490/F1000Research.1110178.1 |
0.356 |
|
| 2014 |
Lopez R, Cowley A, Li W, McWilliam H. Using EMBL-EBI Services via Web Interface and Programmatically via Web Services. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. 48: 3.12.1-3.12.50. PMID 25501941 DOI: 10.1002/0471250953.Bi0312S48 |
0.447 |
|
| 2014 |
Jones P, Binns D, Chang HY, Fraser M, Li W, McAnulla C, McWilliam H, Maslen J, Mitchell A, Nuka G, Pesseat S, Quinn AF, Sangrador-Vegas A, Scheremetjew M, Yong SY, ... Lopez R, et al. InterProScan 5: genome-scale protein function classification. Bioinformatics (Oxford, England). 30: 1236-40. PMID 24451626 DOI: 10.1093/Bioinformatics/Btu031 |
0.395 |
|
| 2014 |
Apweiler R, Bateman A, Martin MJ, O'Donovan C, Magrane M, Alam-Faruque Y, Alpi E, Antunes R, Arganiska J, Casanova EB, Bely B, Bingley M, Bonilla C, Britto R, Bursteinas B, ... ... Lopez R, et al. Activities at the Universal Protein Resource (UniProt) Nucleic Acids Research. 42: D191-D198. PMID 24253303 DOI: 10.1093/Nar/Gkt1140 |
0.477 |
|
| 2014 |
Pakseresht N, Alako B, Amid C, Cerdeño-Tárraga A, Cleland I, Gibson R, Goodgame N, Gur T, Jang M, Kay S, Leinonen R, Li W, Liu X, Lopez R, McWilliam H, et al. Assembly information services in the European Nucleotide Archive. Nucleic Acids Research. 42: D38-43. PMID 24214989 DOI: 10.1093/Nar/Gkt1082 |
0.442 |
|
| 2014 |
Kalaš M, Gundersen S, Kaján L, Ison J, Pettifer S, Blanchet C, Lopez R, Rapacki K, Jonassen I. BioXSD: a data model for sequences, alignments, features and measurements F1000research. 5. DOI: 10.7490/F1000Research.1096816.1 |
0.367 |
|
| 2013 |
McWilliam H, Li W, Uludag M, Squizzato S, Park YM, Buso N, Cowley AP, Lopez R. Analysis Tool Web Services from the EMBL-EBI. Nucleic Acids Research. 41: W597-600. PMID 23671338 DOI: 10.1093/Nar/Gkt376 |
0.471 |
|
| 2013 |
de Matos P, Cham JA, Cao H, Alcántara R, Rowland F, Lopez R, Steinbeck C. The Enzyme Portal: a case study in applying user-centred design methods in bioinformatics. Bmc Bioinformatics. 14: 103. PMID 23514033 DOI: 10.1186/1471-2105-14-103 |
0.393 |
|
| 2013 |
Ison J, Kalas M, Jonassen I, Bolser D, Uludag M, McWilliam H, Malone J, Lopez R, Pettifer S, Rice P. EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats. Bioinformatics (Oxford, England). 29: 1325-32. PMID 23479348 DOI: 10.1093/Bioinformatics/Btt113 |
0.486 |
|
| 2013 |
Li W, Kondratowicz B, McWilliam H, Nauche S, Lopez R. The annotation-enriched non-redundant patent sequence databases. Database : the Journal of Biological Databases and Curation. 2013: bat005. PMID 23396323 DOI: 10.1093/Database/Bat005 |
0.524 |
|
| 2013 |
Cochrane G, Alako B, Amid C, Bower L, Cerdeño-Tárraga A, Cleland I, Gibson R, Goodgame N, Jang M, Kay S, Leinonen R, Lin X, Lopez R, McWilliam H, Oisel A, et al. Facing growth in the European Nucleotide Archive. Nucleic Acids Research. 41: D30-5. PMID 23203883 DOI: 10.1093/Nar/Gks1175 |
0.448 |
|
| 2013 |
Alcántara R, Onwubiko J, Cao H, Matos Pd, Cham JA, Jacobsen J, Holliday GL, Fischer JD, Rahman SA, Jassal B, Goujon M, Rowland F, Velankar S, López R, Overington JP, et al. The EBI enzyme portal. Nucleic Acids Research. 41: D773-80. PMID 23175605 DOI: 10.1093/Nar/Gks1112 |
0.385 |
|
| 2012 |
Li W, McWilliam H, Goujon M, Cowley A, Lopez R, Pearson WR. PSI-Search Bioinformatics. 28: 1650-1651. PMID 22539666 DOI: 10.1093/Bioinformatics/Bts240 |
0.443 |
|
| 2012 |
Hunter S, Jones P, Mitchell A, Apweiler R, Attwood TK, Bateman A, Bernard T, Binns D, Bork P, Burge S, de Castro E, Coggill P, Corbett M, Das U, Daugherty L, ... ... Lopez R, et al. InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Research. 40: D306-12. PMID 22096229 DOI: 10.1093/Nar/Gkr948 |
0.519 |
|
| 2011 |
Sievers F, Wilm A, Dineen D, Gibson TJ, Karplus K, Li W, Lopez R, McWilliam H, Remmert M, Söding J, Thompson JD, Higgins DG. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Molecular Systems Biology. 7: 539. PMID 21988835 DOI: 10.1038/Msb.2011.75 |
0.332 |
|
| 2011 |
Cham JA, Lopez R, Cameron G. The EMBL-EBI user survey F1000research. 2. DOI: 10.7490/F1000Research.1958.1 |
0.309 |
|
| 2010 |
Wright VA, Vaughan BW, Laurent T, Lopez R, Brooksbank C, Schneider MV. Bioinformatics training: selecting an appropriate learning content management system—an example from the European Bioinformatics Institute Briefings in Bioinformatics. 11: 552-562. PMID 20601435 DOI: 10.1093/Bib/Bbq023 |
0.347 |
|
| 2010 |
Bhagat J, Tanoh F, Nzuobontane E, Laurent T, Orlowski J, Roos M, Wolstencroft K, Aleksejevs S, Stevens R, Pettifer S, Lopez R, Goble CA. BioCatalogue: a universal catalogue of web services for the life sciences. Nucleic Acids Research. 38: W689-94. PMID 20484378 DOI: 10.1093/Nar/Gkq394 |
0.401 |
|
| 2010 |
Goujon M, McWilliam H, Li W, Valentin F, Squizzato S, Paern J, Lopez R. A new bioinformatics analysis tools framework at EMBL–EBI Nucleic Acids Research. 38: 0-0. PMID 20439314 DOI: 10.1093/Nar/Gkq313 |
0.528 |
|
| 2010 |
Valentin F, Squizzato S, Goujon M, McWilliam H, Paern J, Lopez R. Fast and efficient searching of biological data resources—using EB-eye Briefings in Bioinformatics. 11: 375-384. PMID 20150321 DOI: 10.1093/Bib/Bbp065 |
0.416 |
|
| 2010 |
Leinonen R, Akhtar R, Birney E, Bonfield J, Bower L, Corbett M, Cheng Y, Demiralp F, Faruque N, Goodgame N, Gibson R, Hoad G, Hunter C, Jang M, Leonard S, ... ... Lopez R, et al. Improvements to services at the European Nucleotide Archive. Nucleic Acids Research. 38: D39-45. PMID 19906712 DOI: 10.1093/Nar/Gkp998 |
0.511 |
|
| 2010 |
Li W, McWilliam H, Torre ARdl, Grodowski A, Benediktovich I, Goujon M, Nauche S, Lopez R. Non-redundant patent sequence databases with value-added annotations at two levels Nucleic Acids Research. 38: 52-56. PMID 19884134 DOI: 10.1093/Nar/Gkp960 |
0.46 |
|
| 2009 |
McWilliam H, Valentin F, Goujon M, Li W, Narayanasamy M, Martin J, Miyar T, Lopez R. Web services at the European Bioinformatics Institute-2009. Nucleic Acids Research. 37: W6-10. PMID 19435877 DOI: 10.1093/nar/gkp302 |
0.371 |
|
| 2009 |
Cochrane G, Akhtar R, Bonfield J, Bower L, Demiralp F, Faruque N, Gibson R, Hoad G, Hubbard T, Hunter C, Jang M, Juhos S, Leinonen R, Leonard S, Lin Q, ... Lopez R, et al. Petabyte-scale innovations at the European Nucleotide Archive. Nucleic Acids Research. 37: D19-25. PMID 18978013 DOI: 10.1093/Nar/Gkn765 |
0.446 |
|
| 2009 |
Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L, Finn RD, Gough J, Haft D, Hulo N, Kahn D, ... ... Lopez R, et al. InterPro: the integrative protein signature database. Nucleic Acids Research. 37: D211-5. PMID 18940856 DOI: 10.1093/Nar/Gkn785 |
0.497 |
|
| 2009 |
Robinson J, Waller MJ, Fail SC, McWilliam H, Lopez R, Parham P, Marsh SG. The IMGT/HLA database. Nucleic Acids Research. 37: D1013-7. PMID 18838392 DOI: 10.1093/Nar/Gkn662 |
0.393 |
|
| 2009 |
Goble CA, Belhajjame K, Tanoh F, Bhagat J, Wolstencroft K, Stevens R, Nzuobontane E, McWilliam H, Laurent T, Lopez R. BioCatalogue: A Curated Web Service Registry For The Life Science Community Nature Precedings. 1-1. DOI: 10.1038/Npre.2009.3132.1 |
0.407 |
|
| 2008 |
Goble CA, Stevens R, Hull D, Wolstencroft K, Lopez R. Data curation + process curation=data integration + science Briefings in Bioinformatics. 9: 506-517. PMID 19060304 DOI: 10.1093/Bib/Bbn034 |
0.394 |
|
| 2008 |
Chica C, Labarga A, Gould CM, López R, Gibson TJ. A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences. Bmc Bioinformatics. 9: 229. PMID 18460207 DOI: 10.1186/1471-2105-9-229 |
0.426 |
|
| 2008 |
Cochrane G, Akhtar R, Aldebert P, Althorpe N, Baldwin A, Bates K, Bhattacharyya S, Bonfield J, Bower L, Browne P, Castro M, Cox T, Demiralp F, Eberhardt R, Faruque N, ... ... Lopez R, et al. Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database. Nucleic Acids Research. 36: D5-12. PMID 18039715 DOI: 10.1093/Nar/Gkm1018 |
0.454 |
|
| 2007 |
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG. Clustal W and Clustal X version 2.0. Bioinformatics (Oxford, England). 23: 2947-8. PMID 17846036 DOI: 10.1093/Bioinformatics/Btm404 |
0.337 |
|
| 2007 |
Mcwilliam H, Valentin F, Goujon M, Li W, Narayanasamy M, Martin J, Miyar T, Lopez R. Web services at the European Bioinformatics Institute-2009 Nucleic Acids Research. 35: 6-10. PMID 17576686 DOI: 10.1093/Nar/Gkm291 |
0.466 |
|
| 2007 |
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Buillard V, Cerutti L, Copley R, Courcelle E, Das U, Daugherty L, Dibley M, Finn R, ... ... Lopez R, et al. New developments in the InterPro database. Nucleic Acids Research. 35: D224-8. PMID 17202162 DOI: 10.1093/Nar/Gkl841 |
0.505 |
|
| 2007 |
Kulikova T, Akhtar R, Aldebert P, Althorpe N, Andersson M, Baldwin A, Bates K, Bhattacharyya S, Bower L, Browne P, Castro M, Cochrane G, Duggan K, Eberhardt R, Faruque N, ... ... Lopez R, et al. EMBL Nucleotide Sequence Database in 2006. Nucleic Acids Research. 35: D16-20. PMID 17148479 DOI: 10.1093/Nar/Gkl913 |
0.52 |
|
| 2006 |
Albeck S, Alzari P, Andreini C, Banci L, Berry IM, Bertini I, Cambillau C, Canard B, Carter L, Cohen SX, Diprose JM, Dym O, Esnouf RM, Felder C, Ferron F, ... ... Lopez R, et al. SPINE bioinformatics and data-management aspects of high-throughput structural biology. Acta Crystallographica. Section D, Biological Crystallography. 62: 1184-95. PMID 17001095 DOI: 10.1107/S090744490602991X |
0.312 |
|
| 2006 |
Wu CH, Apweiler R, Bairoch A, Natale DA, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Mazumder R, O'Donovan C, Redaschi N, et al. The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucleic Acids Research. 34: D187-91. PMID 16381842 DOI: 10.1093/Nar/Gkj161 |
0.519 |
|
| 2006 |
Cochrane G, Aldebert P, Althorpe N, Andersson M, Baker W, Baldwin A, Bates K, Bhattacharyya S, Browne P, van den Broek A, Castro M, Duggan K, Eberhardt R, Faruque N, Gamble J, ... ... Lopez R, et al. EMBL Nucleotide Sequence Database: developments in 2005. Nucleic Acids Research. 34: D10-5. PMID 16381823 DOI: 10.1093/Nar/Gkj130 |
0.515 |
|
| 2005 |
Pillai S, Silventoinen V, Kallio K, Senger M, Sobhany S, Tate J, Velankar S, Golovin A, Henrick K, Rice P, Stoehr P, Lopez R. SOAP-based services provided by the European Bioinformatics Institute. Nucleic Acids Research. 33: W25-8. PMID 15980463 DOI: 10.1093/Nar/Gki491 |
0.429 |
|
| 2005 |
Quevillon E, Silventoinen V, Pillai S, Harte N, Mulder N, Apweiler R, Lopez R. InterProScan: Protein domains identifier Nucleic Acids Research. 33: W116-W120. PMID 15980438 DOI: 10.1093/Nar/Gki442 |
0.405 |
|
| 2005 |
Kanz C, Aldebert P, Althorpe N, Baker W, Baldwin A, Bates K, Browne P, van den Broek A, Castro M, Cochrane G, Duggan K, Eberhardt R, Faruque N, Gamble J, Diez FG, ... ... Lopez R, et al. The EMBL Nucleotide Sequence Database. Nucleic Acids Research. 33: D29-33. PMID 15608199 DOI: 10.1093/nar/gki098 |
0.401 |
|
| 2005 |
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bradley P, Bork P, Bucher P, Cerutti L, Copley R, Courcelle E, Das U, Durbin R, Fleischmann W, ... ... Lopez R, et al. InterPro, progress and status in 2005. Nucleic Acids Research. 33: D201-5. PMID 15608177 DOI: 10.1093/Nar/Gki106 |
0.427 |
|
| 2005 |
Bairoch A, Apweiler R, Wu CH, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Natale DA, O'Donovan C, Redaschi N, Yeh LS. The Universal Protein Resource (UniProt). Nucleic Acids Research. 33: D154-9. PMID 15608167 DOI: 10.1093/Nar/Gki070 |
0.503 |
|
| 2004 |
Harte N, Silventoinen V, Quevillon E, Robinson S, Kallio K, Fustero X, Patel P, Jokinen P, Lopez R. Public web-based services from the European Bioinformatics Institute Nucleic Acids Research. 32: 3-9. PMID 15215339 DOI: 10.1093/Nar/Gkh405 |
0.454 |
|
| 2004 |
Leinonen R, Garcia Diez F, Binns D, Fleischmann W, Lopez R, Apweiler R. UniProt archive Bioinformatics. 20: 3236-3237. PMID 15044231 DOI: 10.1093/Bioinformatics/Bth191 |
0.467 |
|
| 2004 |
Camon E, Magrane M, Barrell D, Lee V, Dimmer E, Maslen J, Binns D, Harte N, Lopez R, Apweiler R. The Gene Ontology Annotation (GOA) Database: Sharing knowledge in Uniprot with Gene Oncology Nucleic Acids Research. 32: D262-D266. PMID 14681408 DOI: 10.1093/Nar/Gkh021 |
0.456 |
|
| 2004 |
Apweiler R, Bairoch A, Wu CH, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Natale DA, O'Donovan C, Redaschi N, Yeh LS. UniProt: the Universal Protein knowledgebase. Nucleic Acids Research. 32: D115-9. PMID 14681372 DOI: 10.1093/Nar/Gkh131 |
0.499 |
|
| 2004 |
Kulikova T, Aldebert P, Althorpe N, Baker W, Bates K, Browne P, van den Broek A, Cochrane G, Duggan K, Eberhardt R, Faruque N, Garcia-Pastor M, Harte N, Kanz C, Leinonen R, ... ... Lopez R, et al. The EMBL Nucleotide Sequence Database. Nucleic Acids Research. 32: D27-30. PMID 14681351 DOI: 10.1093/nar/gkh120 |
0.434 |
|
| 2004 |
Kulikova T, Aldebert P, Althorpe N, Baker W, Bates K, Browne P, Broek Avd, Cochrane G, Duggan K, Eberhardt RY, Faruque N, Garcia-Pastor M, Harte N, Kanz C, Leinonen R, ... ... Lopez R, et al. The EMBL Nucleotide Sequence Database Nucleic Acids Research. 25: 21-26. PMID 10592171 DOI: 10.1093/Nar/28.1.19 |
0.493 |
|
| 2003 |
Lopez R, Duggan K, Harte N, Kibria A. Public services from the European Bioinformatics Institute Briefings in Bioinformatics. 4: 332-340. PMID 14725346 DOI: 10.1093/Bib/4.4.332 |
0.427 |
|
| 2003 |
Lopez R, Silventoinen V, Robinson S, Kibria A, Gish W. WU-Blast2 server at the European Bioinformatics Institute. Nucleic Acids Research. 31: 3795-8. PMID 12824421 DOI: 10.1093/Nar/Gkg573 |
0.474 |
|
| 2003 |
Chenna R, Sugawara H, Koike T, Lopez R, Gibson TJ, Higgins DG, Thompson JD. Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Research. 31: 3497-500. PMID 12824352 DOI: 10.1093/Nar/Gkg500 |
0.387 |
|
| 2003 |
Lopez R, Robinson S, Kibria A, Harte N, Patel G, Harper R, Quevillon E, Silventoinen V, Kallio K, Jokinen P. The European Bioinformatics Institute web site: a new view. Bioinformatics. 19: 546-547. PMID 12611814 DOI: 10.1093/Bioinformatics/Btg022 |
0.426 |
|
| 2003 |
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Barrell D, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley RR, Courcelle E, Das U, Durbin R, ... ... Lopez R, et al. The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Research. 31: 315-8. PMID 12520011 DOI: 10.1093/Nar/Gkg046 |
0.494 |
|
| 2003 |
Brooksbank C, Camon E, Harris MA, Magrane M, Martin MJ, Mulder N, O'Donovan C, Parkinson H, Tuli MA, Apweiler R, Birney E, Brazma A, Henrick K, Lopez R, Stoesser G, et al. The European Bioinformatics Institute's data resources. Nucleic Acids Research. 31: 43-50. PMID 12519944 DOI: 10.1093/nar/gkg066 |
0.361 |
|
| 2003 |
Stoesser G, Baker W, van den Broek A, Garcia-Pastor M, Kanz C, Kulikova T, Leinonen R, Lin Q, Lombard V, Lopez R, Mancuso R, Nardone F, Stoehr P, Tuli MA, Tzouvara K, et al. The EMBL Nucleotide Sequence Database: major new developments. Nucleic Acids Research. 31: 17-22. PMID 12519939 DOI: 10.1093/Nar/Gkg021 |
0.501 |
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| 2002 |
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley R, Courcelle E, Durbin R, Falquet L, Fleischmann W, ... ... Lopez R, et al. InterPro: an integrated documentation resource for protein families, domains and functional sites. Briefings in Bioinformatics. 3: 225-35. PMID 12230031 DOI: 10.1093/Bib/3.3.225 |
0.485 |
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| 2002 |
Zdobnov EM, Lopez R, Apweiler R, Etzold T. The EBI SRS server-new features. Bioinformatics (Oxford, England). 18: 1149-50. PMID 12176845 DOI: 10.1093/Bioinformatics/18.8.1149 |
0.491 |
|
| 2002 |
Zdobnov EM, Lopez R, Apweiler R, Etzold T. The EBI SRS server--recent developments. Bioinformatics (Oxford, England). 18: 368-73. PMID 11847095 DOI: 10.1093/Bioinformatics/18.2.368 |
0.444 |
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| 2002 |
Stoesser G, Baker W, van den Broek A, Camon E, Garcia-Pastor M, Kanz C, Kulikova T, Leinonen R, Lin Q, Lombard V, Lopez R, Redaschi N, Stoehr P, Tuli MA, Tzouvara K, et al. The EMBL Nucleotide Sequence Database. Nucleic Acids Research. 30: 21-6. PMID 11752244 |
0.441 |
|
| 2001 |
Apweiler R, Attwood TK, Bairoch A, Bateman A, Birney E, Biswas M, Bucher P, Cerutti L, Corpet F, Croning MD, Durbin R, Falquet L, Fleischmann W, Gouzy J, Hermjakob H, ... ... Lopez R, et al. The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Research. 29: 37-40. PMID 11125043 DOI: 10.1093/Nar/29.1.37 |
0.454 |
|
| 2000 |
Apweiler R, Attwood TK, Bairoch A, Bateman A, Birney E, Biswas M, Bucher P, Cerutti L, Corpet F, Croning MD, Durbin R, Falquet L, Fleischmann W, Gouzy J, Hermjakob H, ... ... Lopez R, et al. InterPro--an integrated documentation resource for protein families, domains and functional sites. Bioinformatics (Oxford, England). 16: 1145-50. PMID 11159333 DOI: 10.1093/Bioinformatics/16.12.1145 |
0.387 |
|
| 1994 |
Lopez R, Larsen F, Prydz H. Evaluation of the Exon Predictions of the GRAIL Software Genomics. 24: 133-136. PMID 7896267 DOI: 10.1006/Geno.1994.1590 |
0.356 |
|
| 1993 |
Narahara A, Naterstad K, Kristensen T, Lopez R, Bork P, Kolstø AB. Cloning of a gene from Bacillus cereus with homology to the mreB gene from Escherichia coli. Gene. 122: 181-5. PMID 1452027 DOI: 10.1016/0378-1119(92)90047-S |
0.3 |
|
| 1992 |
Hegna IK, Karlstrøm ES, Lopez R, Kristensen T, Kolstø A. A type-III DNA restriction and modification system in Bacillus cereus? Gene. 114: 149-150. PMID 1587478 DOI: 10.1016/0378-1119(92)90722-2 |
0.303 |
|
| 1992 |
Kristensen T, Lopez R, Prydz H. An estimate of the sequencing error frequency in the DNA sequence databases Dna Sequence. 2: 343-346. PMID 1446073 DOI: 10.3109/10425179209020815 |
0.367 |
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