| Year |
Citation |
Score |
| 2021 |
Feuermann M, Boutet E, Morgat A, Axelsen KB, Bansal P, Bolleman J, de Castro E, Coudert E, Gasteiger E, Géhant S, Lieberherr D, Lombardot T, Neto TB, Pedruzzi I, Poux S, ... ... Redaschi N, et al. Diverse Taxonomies for Diverse Chemistries: Enhanced Representation of Natural Product Metabolism in UniProtKB. Metabolites. 11. PMID 33445429 DOI: 10.3390/metabo11010048 |
0.317 |
|
| 2020 |
Bolleman J, de Castro E, Baratin D, Gehant S, Cuche BA, Auchincloss AH, Coudert E, Hulo C, Masson P, Pedruzzi I, Rivoire C, Xenarios I, Redaschi N, Bridge A. HAMAP as SPARQL rules-A portable annotation pipeline for genomes and proteomes. Gigascience. 9. PMID 32034905 DOI: 10.1093/Gigascience/Giaa003 |
0.388 |
|
| 2020 |
Drysdale R, Cook CE, Petryszak R, Baillie-Gerritsen V, Barlow M, Gasteiger E, Gruhl F, Haas J, Lanfear J, Lopez R, Redaschi N, Stockinger H, Teixeira D, Venkatesan A, et al. The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences. Bioinformatics (Oxford, England). PMID 31950984 DOI: 10.1093/Bioinformatics/Btz959 |
0.359 |
|
| 2019 |
Morgat A, Lombardot T, Coudert E, Axelsen K, Neto TB, Gehant S, Bansal P, Bolleman J, Gasteiger E, de Castro E, Baratin D, Pozzato M, Xenarios I, Poux S, Redaschi N, et al. Enzyme annotation in UniProtKB using Rhea. Bioinformatics (Oxford, England). PMID 31688925 DOI: 10.1093/Bioinformatics/Btz817 |
0.322 |
|
| 2019 |
Famiglietti ML, Estreicher A, Breuza L, Poux S, Redaschi N, Xenarios I, Bridge A. An enhanced workflow for variant interpretation in UniProtKB/Swiss-Prot improves consistency and reuse in ClinVar. Database : the Journal of Biological Databases and Curation. 2019. PMID 30937429 DOI: 10.1093/Database/Baz040 |
0.439 |
|
| 2019 |
Morgat A, Lombardot T, Axelsen KB, Aimo L, Coudert E, Niknejad A, Hyka-Nouspikel N, Bolleman JT, Ignatchenko A, Neto TM, Redaschi N, Bridge A. Rhea, an expert curated resource of biochemical reactions for enzyme annotation and genome-scale metabolic modeling F1000research. 8. DOI: 10.7490/F1000Research.1116545.1 |
0.342 |
|
| 2019 |
Bolleman J, Castro Ed, Baratin D, Géhant S, Cuche B, Auchincloss A, Coudert E, Hulo C, Masson P, Pedruzzi I, Rivoire C, Xenarios I, Redaschi N, Bridge A. HAMAP as SPARQL: annotate all your proteins F1000research. 8. DOI: 10.7490/F1000Research.1116535.1 |
0.358 |
|
| 2018 |
Mitchell AL, Attwood TK, Babbitt PC, Blum M, Bork P, Bridge A, Brown SD, Chang HY, El-Gebali S, Fraser MI, Gough J, Haft DR, Huang H, Letunic I, Lopez R, ... ... Redaschi N, et al. InterPro in 2019: improving coverage, classification and access to protein sequence annotations. Nucleic Acids Research. PMID 30398656 DOI: 10.1093/Nar/Gky1100 |
0.464 |
|
| 2018 |
Lombardot T, Morgat A, Axelsen KB, Aimo L, Hyka-Nouspikel N, Niknejad A, Ignatchenko A, Xenarios I, Coudert E, Redaschi N, Bridge A. Updates in Rhea: SPARQLing biochemical reaction data. Nucleic Acids Research. PMID 30272209 DOI: 10.1093/Nar/Gky876 |
0.42 |
|
| 2018 |
Bolleman J, Lombardot T, Redaschi N, Pagni M, Bridge A. A Microbial metabolism resource for Systems Biology: Shared semantic standards for reference data types (ELIXIR Implementation Study Deliverable Report) F1000research. 7. DOI: 10.7490/F1000Research.1116015.1 |
0.331 |
|
| 2017 |
Breuza L, Famiglietti ML, Neto TM, Bougueleret L, Redaschi N, Bridge AJ, Xenarios I, Poux S. Curation of human protein variants in UniProtKB/Swiss-Prot F1000research. 6. DOI: 10.7490/F1000Research.1113880.1 |
0.324 |
|
| 2016 |
Bursteinas B, Britto R, Bely B, Auchincloss A, Rivoire C, Redaschi N, O'Donovan C, Martin MJ. Minimizing proteome redundancy in the UniProt Knowledgebase. Database : the Journal of Biological Databases and Curation. 2016. PMID 28025334 DOI: 10.1093/Database/Baw139 |
0.467 |
|
| 2016 |
Finn RD, Attwood TK, Babbitt PC, Bateman A, Bork P, Bridge AJ, Chang HY, Dosztányi Z, El-Gebali S, Fraser M, Gough J, Haft D, Holliday GL, Huang H, Huang X, ... ... Redaschi N, et al. InterPro in 2017-beyond protein family and domain annotations. Nucleic Acids Research. PMID 27899635 DOI: 10.1093/Nar/Gkw1107 |
0.441 |
|
| 2016 |
Durinx C, McEntyre J, Appel R, Apweiler R, Barlow M, Blomberg N, Cook C, Gasteiger E, Kim JH, Lopez R, Redaschi N, Stockinger H, Teixeira D, Valencia A. Identifying ELIXIR Core Data Resources. F1000research. 5. PMID 27803796 DOI: 10.12688/F1000Research.9656.1 |
0.386 |
|
| 2016 |
Morgat A, Lombardot T, Axelsen KB, Aimo L, Niknejad A, Hyka-Nouspikel N, Coudert E, Pozzato M, Pagni M, Moretti S, Rosanoff S, Onwubiko J, Bougueleret L, Xenarios I, Redaschi N, et al. Updates in rhea-an expert curated resource of biochemical reactions. Nucleic Acids Research. PMID 27789701 DOI: 10.1093/Nar/Gkw990 |
0.334 |
|
| 2016 |
Breuza L, Poux S, Estreicher A, Famiglietti ML, Magrane M, Tognolli M, Bridge A, Baratin D, Redaschi N. The UniProtKB guide to the human proteome Database. 2016. PMID 26896845 DOI: 10.1093/Database/Bav120 |
0.424 |
|
| 2016 |
Famiglietti ML, Breuza L, Neto T, Gehant S, Redaschi N, Bougueleret L, Xenarios I, Poux S. Human protein variants in UniProtKB/Swiss-Prot: improving access to knowledge through standardized annotations F1000research. 5. DOI: 10.7490/F1000Research.1111798.1 |
0.386 |
|
| 2015 |
Wimalaratne SM, Bolleman J, Juty N, Katayama T, Dumontier M, Redaschi N, Le Novère N, Hermjakob H, Laibe C. SPARQL-enabled identifier conversion with Identifiers.org. Bioinformatics (Oxford, England). 31: 1875-7. PMID 25638809 DOI: 10.1093/Bioinformatics/Btv064 |
0.405 |
|
| 2015 |
Mitchell A, Chang HY, Daugherty L, Fraser M, Hunter S, Lopez R, McAnulla C, McMenamin C, Nuka G, Pesseat S, Sangrador-Vegas A, Scheremetjew M, Rato C, Yong SY, Bateman A, ... ... Redaschi N, et al. The InterPro protein families database: the classification resource after 15 years. Nucleic Acids Research. 43: D213-21. PMID 25428371 DOI: 10.1093/Nar/Gku1243 |
0.455 |
|
| 2015 |
Pedruzzi I, Rivoire C, Auchincloss AH, Coudert E, Keller G, de Castro E, Baratin D, Cuche BA, Bougueleret L, Poux S, Redaschi N, Xenarios I, Bridge A. HAMAP in 2015: updates to the protein family classification and annotation system. Nucleic Acids Research. 43: D1064-70. PMID 25348399 DOI: 10.1093/Nar/Gku1002 |
0.436 |
|
| 2015 |
Morgat A, Axelsen KB, Lombardot T, Alcántara R, Aimo L, Zerara M, Niknejad A, Belda E, Hyka-Nouspikel N, Coudert E, Redaschi N, Bougueleret L, Steinbeck C, Xenarios I, Bridge A. Updates in Rhea--a manually curated resource of biochemical reactions. Nucleic Acids Research. 43: D459-64. PMID 25332395 DOI: 10.1093/Nar/Gku961 |
0.356 |
|
| 2014 |
Famiglietti ML, Estreicher A, Gos A, Bolleman J, Géhant S, Breuza L, Bridge A, Poux S, Redaschi N, Bougueleret L, Xenarios I. Genetic variations and diseases in UniProtKB/Swiss-Prot: the ins and outs of expert manual curation. Human Mutation. 35: 927-35. PMID 24848695 DOI: 10.1002/Humu.22594 |
0.371 |
|
| 2014 |
Jupp S, Malone J, Bolleman J, Brandizi M, Davies M, Garcia L, Gaulton A, Gehant S, Laibe C, Redaschi N, Wimalaratne SM, Martin M, Le Novère N, Parkinson H, Birney E, et al. The EBI RDF platform: linked open data for the life sciences. Bioinformatics (Oxford, England). 30: 1338-9. PMID 24413672 DOI: 10.1093/Bioinformatics/Btt765 |
0.404 |
|
| 2014 |
Apweiler R, Bateman A, Martin MJ, O'Donovan C, Magrane M, Alam-Faruque Y, Alpi E, Antunes R, Arganiska J, Casanova EB, Bely B, Bingley M, Bonilla C, Britto R, Bursteinas B, ... ... Redaschi N, et al. Activities at the Universal Protein Resource (UniProt) Nucleic Acids Research. 42: D191-D198. PMID 24253303 DOI: 10.1093/Nar/Gkt1140 |
0.466 |
|
| 2013 |
Pedruzzi I, Rivoire C, Auchincloss AH, Coudert E, Keller G, de Castro E, Baratin D, Cuche BA, Bougueleret L, Poux S, Redaschi N, Xenarios I, Bridge A. HAMAP in 2013, new developments in the protein family classification and annotation system. Nucleic Acids Research. 41: D584-9. PMID 23193261 DOI: 10.1093/Nar/Gks1157 |
0.432 |
|
| 2012 |
Artimo P, Jonnalagedda M, Arnold K, Baratin D, Csardi G, de Castro E, Duvaud S, Flegel V, Fortier A, Gasteiger E, Grosdidier A, Hernandez C, Ioannidis V, Kuznetsov D, Liechti R, ... ... Redaschi N, et al. ExPASy: SIB bioinformatics resource portal. Nucleic Acids Research. 40: W597-603. PMID 22661580 DOI: 10.1093/Nar/Gks400 |
0.421 |
|
| 2009 |
Jain E, Bairoch A, Duvaud S, Phan I, Redaschi N, Suzek BE, Martin MJ, McGarvey P, Gasteiger E. Infrastructure for the life sciences: design and implementation of the UniProt website. Bmc Bioinformatics. 10: 136. PMID 19426475 DOI: 10.1186/1471-2105-10-136 |
0.387 |
|
| 2009 |
Redaschi N. UniProt in RDF: Tackling Data Integration and Distributed Annotation with the Semantic Web Nature Precedings. 1-1. DOI: 10.1038/Npre.2009.3193.1 |
0.455 |
|
| 2006 |
Wu CH, Apweiler R, Bairoch A, Natale DA, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Mazumder R, O'Donovan C, Redaschi N, et al. The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucleic Acids Research. 34: D187-91. PMID 16381842 DOI: 10.1093/Nar/Gkj161 |
0.48 |
|
| 2005 |
Bairoch A, Apweiler R, Wu CH, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Natale DA, O'Donovan C, Redaschi N, Yeh LS. The Universal Protein Resource (UniProt). Nucleic Acids Research. 33: D154-9. PMID 15608167 DOI: 10.1093/Nar/Gki070 |
0.502 |
|
| 2004 |
Apweiler R, Bairoch A, Wu CH, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Natale DA, O'Donovan C, Redaschi N, Yeh LS. UniProt: the Universal Protein knowledgebase. Nucleic Acids Research. 32: D115-9. PMID 14681372 DOI: 10.1093/Nar/Gkh131 |
0.489 |
|
| 2003 |
Leinonen R, Nardone F, Oyewole O, Redaschi N, Stoehr P. The EMBL sequence version archive. Bioinformatics (Oxford, England). 19: 1861-2. PMID 14512364 DOI: 10.1093/Bioinformatics/Btg248 |
0.399 |
|
| 2002 |
Lombard V, Camon EB, Parkinson HE, Hingamp P, Stoesser G, Redaschi N. EMBL-Align: a new public nucleotide and amino acid multiple sequence alignment database. Bioinformatics (Oxford, England). 18: 763-4. PMID 12050074 DOI: 10.1093/Bioinformatics/18.5.763 |
0.432 |
|
| 2002 |
Stoesser G, Baker W, van den Broek A, Camon E, Garcia-Pastor M, Kanz C, Kulikova T, Leinonen R, Lin Q, Lombard V, Lopez R, Redaschi N, Stoehr P, Tuli MA, Tzouvara K, et al. The EMBL Nucleotide Sequence Database. Nucleic Acids Research. 30: 21-6. PMID 11752244 |
0.384 |
|
| 2000 |
Wang L, Rodriguez-Tomé P, Redaschi N, McNeil P, Robinson A, Lijnzaad P. Accessing and distributing EMBL data using CORBA (common object request broker architecture). Genome Biology. 1: RESEARCH0010. PMID 11178259 DOI: 10.1186/Gb-2000-1-5-Research0010 |
0.375 |
|
| 1996 |
Eggenberger F, Redaschi N, Doelz R. FastAlert--an automatic search system to alert about new entries in biological sequence databanks. Computer Applications in the Biosciences : Cabios. 12: 129-33. PMID 8744775 DOI: 10.1093/Bioinformatics/12.2.129 |
0.406 |
|
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