Viraj Deshpande, Ph.D.
Affiliations: | 2018 | Computer Science & Engineering | University of California, San Diego, La Jolla, CA |
Area:
BioinformaticsGoogle:
"Viraj Deshpande"
BETA: Related publications
See more...
Publications
|
You can help our author matching system! If you notice any publications incorrectly attributed to this author, please sign in and mark matches as correct or incorrect. |
| Luebeck J, Coruh C, Dehkordi SR, et al. (2020) AmpliconReconstructor integrates NGS and optical mapping to resolve the complex structures of focal amplifications. Nature Communications. 11: 4374 |
| Kim H, Nguyen NP, Turner K, et al. (2020) Extrachromosomal DNA is associated with oncogene amplification and poor outcome across multiple cancers. Nature Genetics |
| Rajkumar U, Turner K, Luebeck J, et al. (2019) EcSeg: Semantic Segmentation of Metaphase Images Containing Extrachromosomal DNA. Iscience. 21: 428-435 |
| Dolzhenko E, Deshpande V, Schlesinger F, et al. (2019) ExpansionHunter: A sequence-graph based tool to analyze variation in short tandem repeat regions. Bioinformatics (Oxford, England) |
| Deshpande V, Luebeck J, Nguyen ND, et al. (2019) Exploring the landscape of focal amplifications in cancer using AmpliconArchitect. Nature Communications. 10: 392 |
| Nguyen ND, Deshpande V, Luebeck J, et al. (2018) ViFi: accurate detection of viral integration and mRNA fusion reveals indiscriminate and unregulated transcription in proximal genomic regions in cervical cancer. Nucleic Acids Research |
| Turner KM, Deshpande V, Beyter D, et al. (2017) Extrachromosomal oncogene amplification drives tumour evolution and genetic heterogeneity. Nature |
| Deshpande V, Fung EDK, Pham S, et al. (2013) Cerulean: A hybrid assembly using high throughput short and long reads Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8126: 349-363 |