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Rosemary I. Braun, PhD, MPH - Publications

Affiliations: 
Northwestern University, Evanston, IL 
Area:
computational biology, complex systems, biostatistics, bioinformatics, biophysics
Website:
https://scholar.google.com/citations?user=T5XfkMkAAAAJ
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23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Hwangbo DS, Kwon YJ, Iwanaszko M, Jiang P, Abbasi L, Wright N, Alli S, Hutchison AL, Dinner AR, Braun RI, Allada R. Dietary Restriction Impacts Peripheral Circadian Clock Output Important for Longevity in . Biorxiv : the Preprint Server For Biology. PMID 36711760 DOI: 10.1101/2023.01.04.522718  0.697
2020 Maas MB, Iwanaszko M, Lizza BD, Reid KJ, Braun RI, Zee PC. Circadian Gene Expression Rhythms During Critical Illness. Critical Care Medicine. PMID 33031153 DOI: 10.1097/CCM.0000000000004697  0.699
2020 Ness-Cohn E, Iwanaszko M, Kath WL, Allada R, Braun R. TimeTrial: An Interactive Application for Optimizing the Design and Analysis of Transcriptomic Times-Series Data in Circadian Biology Research. Journal of Biological Rhythms. 748730420934672. PMID 32613882 DOI: 10.1177/0748730420934672  0.707
2020 Levine DC, Hong H, Weidemann BJ, Ramsey KM, Affinati AH, Schmidt MS, Cedernaes J, Omura C, Braun R, Lee C, Brenner C, Peek CB, Bass J. NAD Controls Circadian Reprogramming through PER2 Nuclear Translocation to Counter Aging. Molecular Cell. PMID 32369735 DOI: 10.1016/J.Molcel.2020.04.010  0.305
2019 Shah SD, Braun R. GeneSurrounder: network-based identification of disease genes in expression data. Bmc Bioinformatics. 20: 229. PMID 31060502 DOI: 10.1186/S12859-019-2829-Y  0.694
2019 Braun R, Kath WL, Iwanaszko M, Kula-Eversole E, Abbott SM, Reid KJ, Zee PC, Allada R. Reply to Laing et al.: Accurate prediction of circadian time across platforms. Proceedings of the National Academy of Sciences of the United States of America. 116: 5206-5208. PMID 30872489 DOI: 10.1073/Pnas.1819173116  0.689
2019 Grimaldi D, Papalambros NA, Reid KJ, Abbott SM, Malkani RG, Gendy M, Iwanaszko M, Braun RI, Sanchez DJ, Paller KA, Zee PC. Strengthening sleep-autonomic interaction via acoustic enhancement of slow oscillations. Sleep. PMID 30753650 DOI: 10.1093/Sleep/Zsz036  0.67
2019 Wojdyla T, Mehta H, Glaubach T, Bertolusso R, Iwanaszko M, Braun R, Corey SJ, Kimmel M. Mutation, drift and selection in single-driver hematologic malignancy: Example of secondary myelodysplastic syndrome following treatment of inherited neutropenia. Plos Computational Biology. 15: e1006664. PMID 30615612 DOI: 10.1371/Journal.Pcbi.1006664  0.693
2019 Wilk G, Braun R. Integrative analysis reveals disrupted pathways regulated by microRNAs in cancer. Nucleic Acids Research. 46: 1089-1101. PMID 29294105 DOI: 10.1093/Nar/Gkx1250  0.718
2018 Nguyen P, Braun R. Time-lagged Ordered Lasso for network inference. Bmc Bioinformatics. 19: 545. PMID 30594121 DOI: 10.1186/S12859-018-2558-7  0.646
2018 Wilk G, Braun R. regQTLs: Single nucleotide polymorphisms that modulate microRNA regulation of gene expression in tumors. Plos Genetics. 14: e1007837. PMID 30557297 DOI: 10.1371/Journal.Pgen.1007837  0.724
2018 Braun R, Kath WL, Iwanaszko M, Kula-Eversole E, Abbott SM, Reid KJ, Zee PC, Allada R. Universal method for robust detection of circadian state from gene expression. Proceedings of the National Academy of Sciences of the United States of America. PMID 30201705 DOI: 10.1073/Pnas.1800314115  0.721
2017 Nguyen P, Braun R. Semi-supervised network inference using simulated gene expression dynamics. Bioinformatics (Oxford, England). PMID 29186340 DOI: 10.1093/Bioinformatics/Btx748  0.619
2014 Braun R. Systems analysis of high-throughput data. Advances in Experimental Medicine and Biology. 844: 153-87. PMID 25480641 DOI: 10.1007/978-1-4939-2095-2_8  0.397
2013 Nabet B, Braun R, Popovic R, Licht JD. Abstract 740: Investigating the role of epigenetic mechanisms upon aberrant signaling network activation. Cancer Research. 73: 740-740. DOI: 10.1158/1538-7445.Am2013-740  0.344
2011 Braun R, Leibon G, Pauls S, Rockmore D. Partition decoupling for multi-gene analysis of gene expression profiling data. Bmc Bioinformatics. 12: 497. PMID 22208906 DOI: 10.1186/1471-2105-12-497  0.384
2011 Braun R, Buetow K. Pathways of distinction analysis: A new technique for multi-SNP analysis of GWAS data Plos Genetics. 7. PMID 21695280 DOI: 10.1371/Journal.Pgen.1002101  0.317
2008 Braun R, Cope L, Parmigiani G. Identifying differential correlation in gene/pathway combinations Bmc Bioinformatics. 9. PMID 19017408 DOI: 10.1186/1471-2105-9-488  0.358
2006 Cohen J, Arkhipov A, Braun R, Schulten K. Imaging the migration pathways for O2, CO, NO, and Xe inside myoglobin. Biophysical Journal. 91: 1844-57. PMID 16751246 DOI: 10.1529/Biophysj.106.085746  0.536
2005 Phillips JC, Braun R, Wang W, Gumbart J, Tajkhorshid E, Villa E, Chipot C, Skeel RD, Kalé L, Schulten K. Scalable molecular dynamics with NAMD. Journal of Computational Chemistry. 26: 1781-802. PMID 16222654 DOI: 10.1002/Jcc.20289  0.666
2004 Braun R, Engelman DM, Schulten K. Molecular Dynamics Simulations of Micelle Formation around Dimeric Glycophorin A Transmembrane Helices. Biophysical Journal. 87: 754-63. PMID 15298884 DOI: 10.1529/Biophysj.104.040279  0.425
2002 Braun R, Sarikaya M, Schulten K. Genetically engineered gold-binding polypeptides: structure prediction and molecular dynamics. Journal of Biomaterials Science. Polymer Edition. 13: 747-57. PMID 12296441 DOI: 10.1163/156856202760197384  0.434
1999 Gullingsrud JR, Braun R, Schulten K. Reconstructing Potentials of Mean Force through Time Series Analysis of Steered Molecular Dynamics Simulations Journal of Computational Physics. 151: 190-211. DOI: 10.1006/Jcph.1999.6218  0.708
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