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Christopher D. Snow, Ph.D. - Publications

Affiliations: 
2006 Stanford University, Palo Alto, CA 
Area:
theoretical methods to understand the physical properties of biological molecules
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37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Kowalski AE, Johnson LB, Dierl HK, Park S, Huber TR, Snow CD. Porous protein crystals as scaffolds for enzyme immobilization. Biomaterials Science. PMID 30758353 DOI: 10.1039/C8Bm01378K  0.311
2018 Hartje LF, Snow CD. Protein crystal based materials for nanoscale applications in medicine and biotechnology. Wiley Interdisciplinary Reviews. Nanomedicine and Nanobiotechnology. e1547. PMID 30488657 DOI: 10.1002/Wnan.1547  0.322
2018 Zhang Y, Zhang X, Tang J, Snow CD, Sun G, Kowalski AE, Hartje LF, Zhao N, Wang Y, Belfiore LA. Synthesis of luminescent lanthanide complexes within crosslinked protein crystal matrices Crystengcomm. 20: 2267-2277. DOI: 10.1039/C8Ce00318A  0.314
2018 Hartje LF, Bui HT, Andales DA, James SP, Huber TR, Snow CD. Characterizing the Cytocompatibility of Various Cross-Linking Chemistries for the Production of Biostable Large-Pore Protein Crystal Materials Acs Biomaterials Science & Engineering. 4: 826-831. DOI: 10.1021/Acsbiomaterials.8B00023  0.316
2018 Hartje LF, Munsky BE, Bui HT, Andales DA, Snow CD. Characterizing Large-Pore Protein Crystals for Advanced Material Applications Biophysical Journal. 114: 691a. DOI: 10.1016/J.Bpj.2017.11.3725  0.309
2017 Huber TR, McPherson EC, Keating CE, Snow CD. Installing Guest Molecules at Specific Sites within Scaffold Protein Crystals. Bioconjugate Chemistry. PMID 29232505 DOI: 10.1021/Acs.Bioconjchem.7B00668  0.329
2017 Hartje LF, Munsky BE, Ni TW, Ackerson CJ, Snow CD. Adsorption-Coupled Diffusion of Gold Nanoclusters Within a Large-Pore Protein Crystal Scaffold. The Journal of Physical Chemistry. B. PMID 28714685 DOI: 10.1021/Acs.Jpcb.7B03999  0.311
2016 Huber TR, Hartje LF, McPherson EC, Kowalski AE, Snow CD. Programmed Assembly of Host-Guest Protein Crystals. Small (Weinheim An Der Bergstrasse, Germany). PMID 27925463 DOI: 10.1002/Smll.201602703  0.338
2016 Johnson LB, Snow CD. Molecular Dynamics Simulations of Cellulase Homologues in Aqueous 1-ethyl-3-methylimidazolium Chloride. Journal of Biomolecular Structure & Dynamics. 1-41. PMID 27320477 DOI: 10.1080/07391102.2016.1204364  0.331
2016 Lunt MW, Snow CD. A Structure-Based Design Protocol for Optimizing Combinatorial Protein Libraries. Methods in Molecular Biology (Clifton, N.J.). 1414: 99-138. PMID 27094288 DOI: 10.1007/978-1-4939-3569-7_7  0.358
2016 Bennett JA, Snow CD. Optimizing Shape Complementarity Scoring Parameters for Recognition of Authentic Protein Crystal Packing Arrangements Crystal Growth & Design. 16: 5579-5583. DOI: 10.1021/Acs.Cgd.6B00769  0.345
2015 Johnson LB, Gintner LP, Park S, Snow CD. Discriminating between stabilizing and destabilizing protein design mutations via recombination and simulation. Protein Engineering, Design & Selection : Peds. 28: 259-67. PMID 26080450 DOI: 10.1093/Protein/Gzv030  0.359
2014 Johnson LB, Huber TR, Snow CD. Methods for library-scale computational protein design. Methods in Molecular Biology (Clifton, N.J.). 1216: 129-59. PMID 25213414 DOI: 10.1007/978-1-4939-1486-9_7  0.36
2012 Smith MA, Rentmeister A, Snow CD, Wu T, Farrow MF, Mingardon F, Arnold FH. A diverse set of family 48 bacterial glycoside hydrolase cellulases created by structure-guided recombination. The Febs Journal. 279: 4453-65. PMID 23075376 DOI: 10.1111/Febs.12032  0.311
2012 Liu X, Bastian S, Snow CD, Brustad EM, Saleski TE, Xu JH, Meinhold P, Arnold FH. Structure-guided engineering of Lactococcus lactis alcohol dehydrogenase LlAdhA for improved conversion of isobutyraldehyde to isobutanol. Journal of Biotechnology. 164: 188-95. PMID 22974724 DOI: 10.1016/J.Jbiotec.2012.08.008  0.314
2012 Brustad EM, Lelyveld VS, Snow CD, Crook N, Jung ST, Martinez FM, Scholl TJ, Jasanoff A, Arnold FH. Structure-guided directed evolution of highly selective p450-based magnetic resonance imaging sensors for dopamine and serotonin. Journal of Molecular Biology. 422: 245-62. PMID 22659321 DOI: 10.1016/J.Jmb.2012.05.029  0.304
2012 Chen MM, Snow CD, Vizcarra CL, Mayo SL, Arnold FH. Comparison of random mutagenesis and semi-rational designed libraries for improved cytochrome P450 BM3-catalyzed hydroxylation of small alkanes. Protein Engineering, Design & Selection : Peds. 25: 171-8. PMID 22334757 DOI: 10.1093/Protein/Gzs004  0.305
2011 Ng AH, Snow CD. Polarizable protein packing. Journal of Computational Chemistry. 32: 1334-44. PMID 21264879 DOI: 10.1002/Jcc.21714  0.35
2010 Lucent D, Snow CD, Aitken CE, Pande VS. Non-bulk-like solvent behavior in the ribosome exit tunnel Plos Computational Biology. 6. PMID 20975935 DOI: 10.1371/Journal.Pcbi.1000963  0.56
2009 Loksha IV, Maiolo JR, Hong CW, Ng A, Snow CD. SHARPEN-systematic hierarchical algorithms for rotamers and proteins on an extended network. Journal of Computational Chemistry. 30: 999-1005. PMID 19170085 DOI: 10.1002/Jcc.21204  0.42
2008 Petrone PM, Snow CD, Lucent D, Pande VS. Side-chain recognition and gating in the ribosome exit tunnel. Proceedings of the National Academy of Sciences of the United States of America. 105: 16549-54. PMID 18946046 DOI: 10.1073/Pnas.0801795105  0.762
2008 Fasan R, Meharenna YT, Snow CD, Poulos TL, Arnold FH. Evolutionary history of a specialized p450 propane monooxygenase. Journal of Molecular Biology. 383: 1069-80. PMID 18619466 DOI: 10.1016/J.Jmb.2008.06.060  0.319
2007 Li Y, Drummond DA, Sawayama AM, Snow CD, Bloom JD, Arnold FH. A diverse family of thermostable cytochrome P450s created by recombination of stabilizing fragments. Nature Biotechnology. 25: 1051-6. PMID 17721510 DOI: 10.1038/Nbt1333  0.301
2006 Suydam IT, Snow CD, Pande VS, Boxer SG. Electric fields at the active site of an enzyme: direct comparison of experiment with theory. Science (New York, N.Y.). 313: 200-4. PMID 16840693 DOI: 10.1126/Science.1127159  0.511
2006 Snow CD, Rhee YM, Pande VS. Kinetic definition of protein folding transition state ensembles and reaction coordinates. Biophysical Journal. 91: 14-24. PMID 16617068 DOI: 10.1529/Biophysj.105.075689  0.727
2005 Fujitani H, Tanida Y, Ito M, Jayachandran G, Snow CD, Shirts MR, Sorin EJ, Pande VS. Direct calculation of the binding free energies of FKBP ligands. The Journal of Chemical Physics. 123: 084108. PMID 16164283 DOI: 10.1063/1.1999637  0.695
2005 Snow CD, Sorin EJ, Rhee YM, Pande VS. How well can simulation predict protein folding kinetics and thermodynamics? Annual Review of Biophysics and Biomolecular Structure. 34: 43-69. PMID 15869383 DOI: 10.1146/Annurev.Biophys.34.040204.144447  0.793
2005 Chong LT, Snow CD, Rhee YM, Pande VS. Dimerization of the p53 oligomerization domain: identification of a folding nucleus by molecular dynamics simulations. Journal of Molecular Biology. 345: 869-78. PMID 15588832 DOI: 10.1016/J.Jmb.2004.10.083  0.792
2004 Singhal N, Snow CD, Pande VS. Using path sampling to build better Markovian state models: predicting the folding rate and mechanism of a tryptophan zipper beta hairpin. The Journal of Chemical Physics. 121: 415-25. PMID 15260562 DOI: 10.1063/1.1738647  0.603
2004 Snow CD, Qiu L, Du D, Gai F, Hagen SJ, Pande VS. Trp zipper folding kinetics by molecular dynamics and temperature-jump spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. 101: 4077-82. PMID 15020773 DOI: 10.1073/Pnas.0305260101  0.663
2003 Luisi DL, Snow CD, Lin JJ, Hendsch ZS, Tidor B, Raleigh DP. Surface salt bridges, double-mutant cycles, and protein stability: An experimental and computational analysis of the interaction of the Asp 23 side chain with the N-terminus of the N-terminal domain of the ribosomal protein L9 Biochemistry. 42: 7050-7060. PMID 12795600 DOI: 10.1021/Bi027202N  0.375
2003 Pande VS, Baker I, Chapman J, Elmer SP, Khaliq S, Larson SM, Rhee YM, Shirts MR, Snow CD, Sorin EJ, Zagrovic B. Atomistic protein folding simulations on the submillisecond time scale using worldwide distributed computing. Biopolymers. 68: 91-109. PMID 12579582 DOI: 10.1002/Bip.10219  0.688
2002 Snow CD, Zagrovic B, Pande VS. The Trp cage: folding kinetics and unfolded state topology via molecular dynamics simulations. Journal of the American Chemical Society. 124: 14548-9. PMID 12465960 DOI: 10.1021/Ja028604L  0.761
2002 Snow CD, Nguyen H, Pande VS, Gruebele M. Absolute comparison of simulated and experimental protein-folding dynamics. Nature. 420: 102-6. PMID 12422224 DOI: 10.1038/Nature01160  0.707
2002 Zagrovic B, Snow CD, Shirts MR, Pande VS. Simulation of folding of a small alpha-helical protein in atomistic detail using worldwide-distributed computing. Journal of Molecular Biology. 323: 927-37. PMID 12417204 DOI: 10.1016/S0022-2836(02)00997-X  0.811
2002 Zagrovic B, Snow CD, Khaliq S, Shirts MR, Pande VS. Native-like mean structure in the unfolded ensemble of small proteins. Journal of Molecular Biology. 323: 153-64. PMID 12368107 DOI: 10.1016/S0022-2836(02)00888-4  0.794
2002 Zagrovic B, Snow CD, Shirts MR, Pande VS. Corrigendum to “Simulation of Folding of a Small Alpha-helical Protein in Atomistic Detail using Worldwide-distributed Computing” Journal of Molecular Biology. 324: 1051. DOI: 10.1016/S0022-2836(02)01244-5  0.76
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