| Year |
Citation |
Score |
| 2023 |
Pivirotto AM, Platt A, Patel R, Kumar S, Hey J. Analyses of allele age and fitness impact reveal human beneficial alleles to be older than neutral controls. Biorxiv : the Preprint Server For Biology. PMID 37873438 DOI: 10.1101/2023.10.09.561569 |
0.734 |
|
| 2022 |
Balmori-de la Puente A, Ventura J, Miñarro M, Somoano A, Hey J, Castresana J. Divergence time estimation using ddRAD data and an isolation-with-migration model applied to water vole populations of Arvicola. Scientific Reports. 12: 4065. PMID 35260719 DOI: 10.1038/s41598-022-07877-y |
0.395 |
|
| 2021 |
Webb A, Knoblauch J, Sabankar N, Kallur AS, Hey J, Sethuraman A. The Popgen Pipeline Platform: A Software Platform for Population Genomic Analyses. Molecular Biology and Evolution. PMID 33950197 DOI: 10.1093/molbev/msab113 |
0.612 |
|
| 2020 |
Liberles DA, Chang B, Geiler-Samerotte K, Goldman A, Hey J, Kaçar B, Meyer M, Murphy W, Posada D, Storfer A. Emerging Frontiers in the Study of Molecular Evolution. Journal of Molecular Evolution. PMID 32060574 DOI: 10.1007/S00239-020-09932-6 |
0.514 |
|
| 2019 |
Hey J, Wang K. The effect of undetected recombination on genealogy sampling and inference under an Isolation with Migration model. Molecular Ecology Resources. PMID 31479562 DOI: 10.1111/1755-0998.13083 |
0.347 |
|
| 2019 |
Platt A, Pivirotto A, Knoblauch J, Hey J. An estimator of first coalescent time reveals selection on young variants and large heterogeneity in rare allele ages among human populations. Plos Genetics. 15: e1008340. PMID 31425500 DOI: 10.1371/Journal.Pgen.1008340 |
0.755 |
|
| 2019 |
Pinho C, Cardoso V, Hey J. A population genetic assessment of taxonomic species: the case of Lake Malawi cichlid fishes. Molecular Ecology Resources. PMID 31012255 DOI: 10.1111/1755-0998.13027 |
0.68 |
|
| 2018 |
Hey J, Chung Y, Sethuraman A, Lachance J, Tishkoff S, Sousa VC, Wang Y. Phylogeny Estimation by Integration over Isolation with Migration Models. Molecular Biology and Evolution. PMID 30137463 DOI: 10.1093/Molbev/Msy162 |
0.823 |
|
| 2017 |
Kern AD, Hey J. Exact Calculation of the Joint Allele Frequency Spectrum for Isolation with Migration Models. Genetics. PMID 28696217 DOI: 10.1534/genetics.116.194019 |
0.397 |
|
| 2017 |
Chung Y, Hey J. Bayesian Analysis of Evolutionary Divergence with Genomic Data Under Diverse Demographic Models. Molecular Biology and Evolution. PMID 28333230 DOI: 10.1093/Molbev/Msx070 |
0.608 |
|
| 2016 |
Knoblauch J, Sethuraman A, Hey J. IMGui-A Desktop GUI Application for Isolation with Migration Analyses. Molecular Biology and Evolution. PMID 28025276 DOI: 10.1093/Molbev/Msw252 |
0.621 |
|
| 2015 |
Hey J, Chung Y, Sethuraman A. On the occurrence of false positives in tests of migration under an isolation-with-migration model. Molecular Ecology. 24: 5078-83. PMID 26456794 DOI: 10.1111/Mec.13381 |
0.75 |
|
| 2015 |
Chen H, Hey J, Chen K. Inferring Very Recent Population Growth Rate from Population-Scale Sequencing Data: Using a Large-Sample Coalescent Estimator. Molecular Biology and Evolution. 32: 2996-3011. PMID 26187437 DOI: 10.1093/molbev/msv158 |
0.418 |
|
| 2015 |
Sethuraman A, Hey J. IMa2p - parallel MCMC and inference of ancient demography under the Isolation with migration (IM) model. Molecular Ecology Resources. PMID 26059786 DOI: 10.1111/1755-0998.12437 |
0.666 |
|
| 2015 |
Chen H, Hey J, Slatkin M. A hidden Markov model for investigating recent positive selection through haplotype structure. Theoretical Population Biology. 99: 18-30. PMID 25446961 DOI: 10.1016/J.Tpb.2014.11.001 |
0.614 |
|
| 2013 |
Joo D, Kwan YS, Song J, Pinho C, Hey J, Won YJ. Identification of cichlid fishes from Lake Malawi using computer vision. Plos One. 8: e77686. PMID 24204918 DOI: 10.1371/Journal.Pone.0077686 |
0.762 |
|
| 2013 |
Wang S, Lachance J, Tishkoff SA, Hey J, Xing J. Apparent variation in Neanderthal admixture among African populations is consistent with gene flow from Non-African populations. Genome Biology and Evolution. 5: 2075-81. PMID 24162011 DOI: 10.1093/Gbe/Evt160 |
0.457 |
|
| 2013 |
Sousa V, Hey J. Understanding the origin of species with genome-scale data: modelling gene flow. Nature Reviews. Genetics. 14: 404-14. PMID 23657479 DOI: 10.1038/nrg3446 |
0.681 |
|
| 2013 |
Sousa VC, Carneiro M, Ferrand N, Hey J. Identifying loci under selection against gene flow in isolation-with-migration models. Genetics. 194: 211-33. PMID 23457232 DOI: 10.1534/genetics.113.149211 |
0.685 |
|
| 2013 |
Loh YH, Bezault E, Muenzel FM, Roberts RB, Swofford R, Barluenga M, Kidd CE, Howe AE, Di Palma F, Lindblad-Toh K, Hey J, Seehausen O, Salzburger W, Kocher TD, Streelman JT. Origins of shared genetic variation in African cichlids. Molecular Biology and Evolution. 30: 906-17. PMID 23275489 DOI: 10.1093/Molbev/Mss326 |
0.405 |
|
| 2012 |
Lukic S, Hey J. Demographic inference using spectral methods on SNP data, with an analysis of the human out-of-Africa expansion. Genetics. 192: 619-39. PMID 22865734 DOI: 10.1534/genetics.112.141846 |
0.425 |
|
| 2012 |
Hey J, Pinho C. Population genetics and objectivity in species diagnosis. Evolution; International Journal of Organic Evolution. 66: 1413-29. PMID 22519781 DOI: 10.1111/J.1558-5646.2011.01542.X |
0.717 |
|
| 2012 |
Runemark A, Hey J, Hansson B, Svensson EI. Vicariance divergence and gene flow among islet populations of an endemic lizard. Molecular Ecology. 21: 117-29. PMID 22129244 DOI: 10.1111/J.1365-294X.2011.05377.X |
0.455 |
|
| 2011 |
Hey J. Regarding the confusion between the population concept and Mayr's "population thinking". The Quarterly Review of Biology. 86: 253-64. PMID 22384747 DOI: 10.1086/662455 |
0.384 |
|
| 2011 |
Sousa VC, Grelaud A, Hey J. On the nonidentifiability of migration time estimates in isolation with migration models. Molecular Ecology. 20: 3956-62. PMID 22039614 DOI: 10.1111/j.1365-294X.2011.05247.x |
0.644 |
|
| 2011 |
Choi SC, Hey J. Joint inference of population assignment and demographic history. Genetics. 189: 561-77. PMID 21775468 DOI: 10.1534/genetics.111.129205 |
0.632 |
|
| 2011 |
Luki? S, Hey J, Chen K. Non-equilibrium allele frequency spectra via spectral methods. Theoretical Population Biology. 79: 203-19. PMID 21376069 DOI: 10.1016/j.tpb.2011.02.003 |
0.387 |
|
| 2011 |
Jiang ZF, Croshaw DA, Wang Y, Hey J, Machado CA. Enrichment of mRNA-like noncoding RNAs in the divergence of Drosophila males. Molecular Biology and Evolution. 28: 1339-48. PMID 21041796 DOI: 10.1093/Molbev/Msq293 |
0.556 |
|
| 2010 |
Beaumont MA, Nielsen R, Robert C, Hey J, Gaggiotti O, Knowles L, Estoup A, Panchal M, Corander J, Hickerson M, Sisson SA, Fagundes N, Chikhi L, Beerli P, Vitalis R, et al. In defence of model-based inference in phylogeography. Molecular Ecology. 19: 436-446. PMID 29284924 DOI: 10.1111/J.1365-294X.2009.04515.X |
0.678 |
|
| 2010 |
Hey J. The divergence of chimpanzee species and subspecies as revealed in multipopulation isolation-with-migration analyses. Molecular Biology and Evolution. 27: 921-33. PMID 19955478 DOI: 10.1093/molbev/msp298 |
0.5 |
|
| 2010 |
Hey J. Isolation with migration models for more than two populations. Molecular Biology and Evolution. 27: 905-20. PMID 19955477 DOI: 10.1093/molbev/msp296 |
0.472 |
|
| 2010 |
Wang Y, Hey J. Estimating divergence parameters with small samples from a large number of loci. Genetics. 184: 363-79. PMID 19917765 DOI: 10.1534/Genetics.109.110528 |
0.494 |
|
| 2010 |
Pinho C, Hey J. Divergence with gene flow: Models and data Annual Review of Ecology, Evolution, and Systematics. 41: 215-230. DOI: 10.1146/Annurev-Ecolsys-102209-144644 |
0.716 |
|
| 2010 |
Beaumont MA, Nielsen R, Robert C, Hey J, Gaggiotti O, Knowles L, Estoup A, Panchal M, Corander J, Hickerson M, Sisson SA, Fagundes N, Chikhi L, Beerli P, Vitalis R, et al. In defence of model-based inference in phylogeography Molecular Ecology. 19: 436-446. DOI: 10.1111/j.1365-294X.2009.04515.x |
0.575 |
|
| 2007 |
Hey J. A model in two acts: a commentary on 'A model detectable alleles in a finite population' by Timoko Ohta and Motoo Kimura. Genetical Research. 89: 365-6. PMID 18976522 DOI: 10.1017/S0016672308009543 |
0.349 |
|
| 2007 |
Hoelzel AR, Hey J, Dahlheim ME, Nicholson C, Burkanov V, Black N. Evolution of population structure in a highly social top predator, the killer whale. Molecular Biology and Evolution. 24: 1407-15. PMID 17400573 DOI: 10.1093/molbev/msm063 |
0.416 |
|
| 2007 |
Hey J, Nielsen R. Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics. Proceedings of the National Academy of Sciences of the United States of America. 104: 2785-90. PMID 17301231 DOI: 10.1073/Pnas.0611164104 |
0.482 |
|
| 2007 |
Shimada MK, Panchapakesan K, Tishkoff SA, Nato AQ, Hey J. Divergent haplotypes and human history as revealed in a worldwide survey of X-linked DNA sequence variation. Molecular Biology and Evolution. 24: 687-98. PMID 17175528 DOI: 10.1093/Molbev/Msl196 |
0.762 |
|
| 2006 |
Hey J. Recent advances in assessing gene flow between diverging populations and species. Current Opinion in Genetics & Development. 16: 592-6. PMID 17055250 DOI: 10.1016/j.gde.2006.10.005 |
0.468 |
|
| 2006 |
Hey J. On the failure of modern species concepts. Trends in Ecology & Evolution. 21: 447-50. PMID 16762447 DOI: 10.1016/j.tree.2006.05.011 |
0.309 |
|
| 2006 |
Won YJ, Wang Y, Sivasundar A, Raincrow J, Hey J. Nuclear gene variation and molecular dating of the cichlid species flock of Lake Malawi. Molecular Biology and Evolution. 23: 828-37. PMID 16461358 DOI: 10.1093/Molbev/Msj101 |
0.804 |
|
| 2005 |
Sivasundar A, Hey J. Sampling from natural populations with RNAI reveals high outcrossing and population structure in Caenorhabditis elegans. Current Biology : Cb. 15: 1598-602. PMID 16139217 DOI: 10.1016/J.Cub.2005.08.034 |
0.796 |
|
| 2005 |
Hey J. On the number of New World founders: a population genetic portrait of the peopling of the Americas. Plos Biology. 3: e193. PMID 15898833 DOI: 10.1371/journal.pbio.0030193 |
0.461 |
|
| 2005 |
Won YJ, Sivasundar A, Wang Y, Hey J. On the origin of Lake Malawi cichlid species: a population genetic analysis of divergence. Proceedings of the National Academy of Sciences of the United States of America. 102: 6581-6. PMID 15851665 DOI: 10.1073/Pnas.0502127102 |
0.819 |
|
| 2005 |
Hey J, Fitch WM, Ayala FJ. Systematics and the origin of species: an introduction. Proceedings of the National Academy of Sciences of the United States of America. 102: 6515-9. PMID 15851660 DOI: 10.1073/Pnas.0501939102 |
0.471 |
|
| 2005 |
Won YJ, Hey J. Divergence population genetics of chimpanzees. Molecular Biology and Evolution. 22: 297-307. PMID 15483319 DOI: 10.1093/Molbev/Msi017 |
0.702 |
|
| 2005 |
Hey J. The ancestor’s tale A pilgrimage to the dawn of evolution Journal of Clinical Investigation. 115: 1680-1680. DOI: 10.1172/JCI25761 |
0.365 |
|
| 2004 |
Hey J, Nielsen R. Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics. 167: 747-60. PMID 15238526 DOI: 10.1534/Genetics.103.024182 |
0.623 |
|
| 2004 |
Hey J. What's so hot about recombination hotspots? Plos Biology. 2: e190. PMID 15208734 DOI: 10.1371/journal.pbio.0020190 |
0.344 |
|
| 2004 |
Hey J, Won YJ, Sivasundar A, Nielsen R, Markert JA. Using nuclear haplotypes with microsatellites to study gene flow between recently separated Cichlid species. Molecular Ecology. 13: 909-19. PMID 15012765 DOI: 10.1046/J.1365-294X.2003.02031.X |
0.819 |
|
| 2003 |
Hey J. Speciation and inversions: chimps and humans. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 25: 825-8. PMID 12938170 DOI: 10.1002/bies.10336 |
0.407 |
|
| 2003 |
Kliman RM, Hey J. Hill-Robertson interference in Drosophila melanogaster: reply to Marais, Mouchiroud and Duret. Genetical Research. 81: 89-90. PMID 12872910 DOI: 10.1017/S0016672302006067 |
0.728 |
|
| 2003 |
Hey J, Machado CA. The study of structured populations--new hope for a difficult and divided science. Nature Reviews. Genetics. 4: 535-43. PMID 12838345 DOI: 10.1038/nrg1112 |
0.586 |
|
| 2003 |
Machado CA, Hey J. The causes of phylogenetic conflict in a classic Drosophila species group. Proceedings. Biological Sciences / the Royal Society. 270: 1193-202. PMID 12816659 DOI: 10.1098/rspb.2003.2333 |
0.584 |
|
| 2003 |
Sivasundar A, Hey J. Population genetics of Caenorhabditis elegans: the paradox of low polymorphism in a widespread species. Genetics. 163: 147-57. PMID 12586703 |
0.812 |
|
| 2003 |
Hey J, Waples RS, Arnold ML, Butlin RK, Harrison RG. Understanding and confronting species uncertainty in biology and conservation Trends in Ecology and Evolution. 18: 597-603. DOI: 10.1016/J.Tree.2003.08.014 |
0.305 |
|
| 2002 |
Ortíz-Barrientos D, Reiland J, Hey J, Noor MA. Recombination and the divergence of hybridizing species. Genetica. 116: 167-78. PMID 12555775 DOI: 10.1023/A:1021296829109 |
0.486 |
|
| 2002 |
Machado CA, Kliman RM, Markert JA, Hey J. Inferring the history of speciation from multilocus DNA sequence data: the case of Drosophila pseudoobscura and close relatives. Molecular Biology and Evolution. 19: 472-88. PMID 11919289 DOI: 10.1093/Oxfordjournals.Molbev.A004103 |
0.795 |
|
| 2002 |
Hey J, Kliman RM. Interactions between natural selection, recombination and gene density in the genes of Drosophila. Genetics. 160: 595-608. PMID 11861564 |
0.705 |
|
| 2001 |
Harris EE, Hey J. Human populations show reduced DNA sequence variation at the factor IX locus. Current Biology : Cb. 11: 774-8. PMID 11378388 DOI: 10.1016/S0960-9822(01)00223-8 |
0.812 |
|
| 2001 |
Wang R, Stec A, Hey J, Lukens L, Doebley J. Erratum: correction: The limits of selection during maize domestication Nature. 410: 718-718. DOI: 10.1038/35070620 |
0.715 |
|
| 2000 |
Noor MA, Johnson NA, Hey J. Gene flow between Drosophila pseudoobscura and D. persimilis. Evolution; International Journal of Organic Evolution. 54: 2174-5; discussion 2. PMID 11209795 DOI: 10.1111/J.0014-3820.2000.Tb01262.X |
0.316 |
|
| 2000 |
Kliman RM, Andolfatto P, Coyne JA, Depaulis F, Kreitman M, Berry AJ, McCarter J, Wakeley J, Hey J. The population genetics of the origin and divergence of the Drosophila simulans complex species. Genetics. 156: 1913-31. PMID 11102384 |
0.817 |
|
| 2000 |
Hey J, Harris E. Origins of modern humans still look recent. Current Biology : Cb. 10: R8-9. PMID 10660285 DOI: 10.1016/S0960-9822(99)00274-2 |
0.774 |
|
| 2000 |
Hey J. Reply from J. Hey Trends in Ecology & Evolution. 15: 471. DOI: 10.1016/S0169-5347(00)01984-4 |
0.371 |
|
| 1999 |
Hey J, Harris E. Population bottlenecks and patterns of human polymorphism. Molecular Biology and Evolution. 16: 1423-6. PMID 10563023 DOI: 10.1093/Oxfordjournals.Molbev.A026054 |
0.78 |
|
| 1999 |
Hey J. The neutralist, the fly and the selectionist Trends in Ecology and Evolution. 14: 35-38. PMID 10234248 DOI: 10.1016/S0169-5347(98)01497-9 |
0.42 |
|
| 1999 |
Wang RL, Stec A, Hey J, Lukens L, Doebley J. The limits of selection during maize domestication Nature. 398: 236-239. PMID 10094045 DOI: 10.1038/18435 |
0.756 |
|
| 1999 |
Harris EE, Hey J. X chromosome evidence for ancient human histories. Proceedings of the National Academy of Sciences of the United States of America. 96: 3320-4. PMID 10077682 DOI: 10.1073/pnas.96.6.3320 |
0.789 |
|
| 1999 |
Harris EE, Hey J. Erratum: Human Demography in the Pleistocene: Do Mitochondrial and Nuclear Genes Tell the Same Story? Evol. Anthropol.8: 81-86. Evolutionary Anthropology: Issues, News, and Reviews. 8: 161-161. DOI: 10.1002/(SICI)1520-6505(1999)8:5<161::AID-EVAN3>3.0.CO;2-A |
0.732 |
|
| 1999 |
Harris EE, Hey J. Human Demography in the Pleistocene: Do Mitochondrial and Nuclear Genes Tell the Same Story? Evolutionary Anthropology: Issues, News, and Reviews. 8: 81-86. DOI: 10.1002/(SICI)1520-6505(1999)8:3<81::AID-EVAN3>3.0.CO;2-4 |
0.731 |
|
| 1998 |
Hey J. Population genetics and human origins--haplotypes are key! Trends in Genetics : Tig. 14: 303-5. PMID 9724961 DOI: 10.1016/S0168-9525(98)01521-2 |
0.423 |
|
| 1997 |
HILTON H, HEY J. A multilocus view of speciation in the
Drosophila virilis species group reveals complex
histories and taxonomic conflicts Genetical Research. 70: 185-194. DOI: 10.1017/S0016672397003042 |
0.798 |
|
| 1994 |
Hilton H, Kliman RM, Hey J. USING HITCHHIKING GENES TO STUDY ADAPTATION AND DIVERGENCE DURING SPECIATION WITHIN THE DROSOPHILA MELANOGASTER SPECIES COMPLEX. Evolution; International Journal of Organic Evolution. 48: 1900-1913. PMID 28565154 DOI: 10.1111/J.1558-5646.1994.Tb02222.X |
0.799 |
|
| 1994 |
Kliman RM, Hey J. The effects of mutation and natural selection on codon bias in the genes of Drosophila. Genetics. 137: 1049-56. PMID 7982559 |
0.709 |
|
| 1993 |
Kliman RM, Hey J. DNA sequence variation at the period locus within and among species of the Drosophila melanogaster complex. Genetics. 133: 375-87. PMID 8436278 |
0.729 |
|
| 1993 |
Hey J, Kliman RM. Population genetics and phylogenetics of DNA sequence variation at multiple loci within the Drosophila melanogaster species complex. Molecular Biology and Evolution. 10: 804-22. PMID 8355601 DOI: 10.1093/Oxfordjournals.Molbev.A040044 |
0.737 |
|
| 1993 |
Kliman RM, Hey J. Reduced natural selection associated with low recombination in Drosophila melanogaster. Molecular Biology and Evolution. 10: 1239-58. PMID 8277853 DOI: 10.1093/Oxfordjournals.Molbev.A040074 |
0.752 |
|
| 1992 |
Hey J. USING PHYLOGENETIC TREES TO STUDY SPECIATION AND EXTINCTION. Evolution; International Journal of Organic Evolution. 46: 627-640. PMID 28568659 DOI: 10.1111/j.1558-5646.1992.tb02071.x |
0.336 |
|
| 1991 |
Hey J. A Multi-dimensional Coalescent Process Applied to Multi-allelic Selection Models and Migration Models Theoretical Population Biology. 39: 30-48. PMID 2024230 DOI: 10.1016/0040-5809(91)90039-I |
0.433 |
|
| 1989 |
Eanes WF, Ajioka JW, Hey J, Wesley C. Restriction-map variation associated with the G6PD polymorphism in natural populations of Drosophila melanogaster. Molecular Biology and Evolution. 6: 384-97. PMID 2575699 DOI: 10.1093/Oxfordjournals.Molbev.A040555 |
0.795 |
|
| 1989 |
Hey J. The transposable portion of the genome of Drosophila algonquin is very different from that in D. melanogaster. Molecular Biology and Evolution. 6: 66-79. PMID 2537921 DOI: 10.1093/OXFORDJOURNALS.MOLBEV.A040530 |
0.352 |
|
| 1989 |
Hey J. Principles of population genetics (2nd edn) Trends in Genetics. 5: 349. DOI: 10.1016/0168-9525(89)90142-X |
0.402 |
|
| 1988 |
Eanes WF, Wesley C, Hey J, Houle D, Ajioka JW. The fitness consequences of P element insertion in Drosophila melanogaster Genetical Research. 52: 17-26. DOI: 10.1017/S0016672300027269 |
0.777 |
|
| 1988 |
Hey J. Speciation via hybrid dysgenesis: negative evidence from the Drosophila affinis subgroup Genetica. 78: 97-103. DOI: 10.1007/BF00058840 |
0.361 |
|
| 1987 |
Hey J, Houle D. Habitat choice in the Drosophila affinis subgroup Heredity. 58: 463-471. DOI: 10.1038/Hdy.1987.76 |
0.595 |
|
| 1986 |
Eanes WF, Hey J. IN VIVO Function of Rare G6pd Variants from Natural Populations of DROSOPHILA MELANOGASTER. Genetics. 113: 679-93. PMID 17246336 |
0.754 |
|
| 1985 |
Eanes WF, Hey J, Houle D. Homozygous and Hemizygous Viability Variation on the X Chromosome of DROSOPHILA MELANOGASTER. Genetics. 111: 831-44. PMID 17246306 |
0.775 |
|
| 1985 |
Eanes WF, Bingham B, Hey J, Houle D. Targeted selection experiments and enzyme polymorphism: negative evidence for octanoate selection at the G6PD locus in Drosophila melanogaster. Genetics. 109: 379-91. PMID 3918918 |
0.784 |
|
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