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Vladimir Filkov, Ph.D. - Publications

Affiliations: 
2002 Stony Brook University, Stony Brook, NY, United States 
Area:
Algorithms, Computational Biology, Large-scale Text Analytics and Sentiment Analysis, Social Trends Analysis, Combinatorial Computing Environments
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26 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Zinkgraf M, Zhao ST, Canning C, Gerttula S, Lu MZ, Filkov V, Groover A. Evolutionary network genomics of wood formation in a phylogenetic survey of angiosperm forest trees. The New Phytologist. PMID 32696464 DOI: 10.1111/Nph.16819  0.398
2019 Liao J, Yang G, Kavaler D, Filkov V, Devanbu P. Status, identity, and language: A study of issue discussions in GitHub. Plos One. 14: e0215059. PMID 31199802 DOI: 10.1371/Journal.Pone.0215059  0.314
2019 Kavaler D, Devanbu P, Filkov V. Whom are you going to call? determinants of @-mentions in Github discussions Empirical Software Engineering. 24: 3904-3932. DOI: 10.1007/S10664-019-09728-3  0.302
2018 Shalit-Kaneh A, Kumimoto RW, Filkov V, Harmer SL. Multiple feedback loops of the Arabidopsis circadian clock provide rhythmic robustness across environmental conditions. Proceedings of the National Academy of Sciences of the United States of America. PMID 29915068 DOI: 10.1073/Pnas.1805524115  0.3
2018 Zinkgraf M, Gerttula S, Zhao S, Filkov V, Groover A. Transcriptional and temporal response of Populus stems to gravi-stimulation. Journal of Integrative Plant Biology. PMID 29480544 DOI: 10.1111/Jipb.12645  0.367
2017 Xuan Q, Zhang ZY, Fu C, Hu HX, Filkov V. Social Synchrony on Complex Networks. Ieee Transactions On Cybernetics. PMID 28500015 DOI: 10.1109/Tcyb.2017.2696998  0.323
2017 Zinkgraf M, Liu L, Groover A, Filkov V. Identifying gene coexpression networks underlying the dynamic regulation of wood-forming tissues in Populus under diverse environmental conditions. The New Phytologist. PMID 28248425 DOI: 10.1111/Nph.14492  0.395
2017 Gharehyazie M, Filkov V. Tracing distributed collaborative development in apache software foundation projects Empirical Software Engineering. 22: 1795-1830. DOI: 10.1007/S10664-016-9463-3  0.301
2016 Kavaler D, Filkov V. Stochastic actor-oriented modeling for studying homophily and social influence in OSS projects Empirical Software Engineering. 1-29. DOI: 10.1007/S10664-016-9431-Y  0.333
2015 Gerttula S, Zinkgraf M, Muday GK, Lewis DR, Ibatullin FM, Brumer H, Hart F, Mansfield SD, Filkov V, Groover A. Transcriptional and Hormonal Regulation of Gravitropism of Woody Stems in Populus. The Plant Cell. PMID 26410302 DOI: 10.1105/Tpc.15.00531  0.32
2015 Xuan Q, Fang H, Fu C, Filkov V. Temporal motifs reveal collaboration patterns in online task-oriented networks. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 91: 052813. PMID 26066218 DOI: 10.1103/Physreve.91.052813  0.374
2015 Liu L, Ramsay T, Zinkgraf M, Sundell D, Street NR, Filkov V, Groover A. A resource for characterizing genome-wide binding and putative target genes of transcription factors expressed during secondary growth and wood formation in Populus. The Plant Journal : For Cell and Molecular Biology. 82: 887-98. PMID 25903933 DOI: 10.1111/Tpj.12850  0.391
2015 Liu L, Zinkgraf M, Petzold HE, Beers EP, Filkov V, Groover A. The Populus ARBORKNOX1 homeodomain transcription factor regulates woody growth through binding to evolutionarily conserved target genes of diverse function. The New Phytologist. 205: 682-94. PMID 25377848 DOI: 10.1111/Nph.13151  0.328
2015 Gharehyazie M, Posnett D, Vasilescu B, Filkov V. Developer initiation and social interactions in OSS: A case study of the Apache Software Foundation Empirical Software Engineering. 20: 1318-1353. DOI: 10.1007/S10664-014-9332-X  0.314
2014 Liu L, Missirian V, Zinkgraf M, Groover A, Filkov V. Evaluation of experimental design and computational parameter choices affecting analyses of ChIP-seq and RNA-seq data in undomesticated poplar trees. Bmc Genomics. 15: S3. PMID 25081589 DOI: 10.1186/1471-2164-15-S5-S3  0.311
2014 Liu L, Filkov V, Groover A. Modeling transcriptional networks regulating secondary growth and wood formation in forest trees. Physiologia Plantarum. 151: 156-63. PMID 24117954 DOI: 10.1111/Ppl.12113  0.381
2011 Tsai H, Howell T, Nitcher R, Missirian V, Watson B, Ngo KJ, Lieberman M, Fass J, Uauy C, Tran RK, Khan AA, Filkov V, Tai TH, Dubcovsky J, Comai L. Discovery of rare mutations in populations: TILLING by sequencing. Plant Physiology. 156: 1257-68. PMID 21531898 DOI: 10.1104/Pp.110.169748  0.306
2009 Roy S, Filkov V. Strong associations between microbe phenotypes and their network architecture. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 80: 040902. PMID 19905265 DOI: 10.1103/Physreve.80.040902  0.35
2009 Filkov V, Saul ZM, Roy S, D'Souza RM, Devanbu PT. Modeling and verifying a broad array of network properties Epl. 86. DOI: 10.1209/0295-5075/86/28003  0.312
2008 Filkov V, Shah N. A simple model of the modular structure of transcriptional regulation in yeast. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 15: 393-405. PMID 18466069 DOI: 10.1089/Cmb.2008.0020  0.4
2007 Saul ZM, Filkov V. Exploring biological network structure using exponential random graph models. Bioinformatics (Oxford, England). 23: 2604-11. PMID 17644557 DOI: 10.1093/Bioinformatics/Btm370  0.324
2004 Filkov V, Skiena S. Heterogeneous data integration with the consensus clustering formalism Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2994: 110-123.  0.543
2003 Filkov V, Skiena S. Integrating Microarray Data by Consensus Clustering Proceedings of the International Conference On Tools With Artificial Intelligence. 418-426. DOI: 10.1142/S0218213004001867  0.572
2002 Filkov V, Skiena S, Zhi J. Analysis techniques for microarray time-series data. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 9: 317-30. PMID 12015884 DOI: 10.1089/10665270252935485  0.567
2002 Filkov V, Istrail S. Inferring Gene Transcription Networks: The Davidson Model Genome Informatics. 13: 236-239. DOI: 10.11234/Gi1990.13.236  0.366
2001 Chen T, Filkov V, Skiena SS. Identifying gene regulatory networks from experimental data Parallel Computing. 27: 141-162. DOI: 10.1016/S0167-8191(00)00092-2  0.567
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