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Amy B. Banta, Ph.D. - Publications

Affiliations: 
2013 Microbiology University of Wisconsin, Madison, Madison, WI 
Area:
Molecular Biology, Microbiology, Geobiology, Genetics
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34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Banta AB, Myers KS, Ward RD, Cuellar RA, Place M, Freeh CC, Bacon EE, Peters JM. A Targeted Genome-scale Overexpression Platform for Proteobacteria. Biorxiv : the Preprint Server For Biology. PMID 38496613 DOI: 10.1101/2024.03.01.582922  0.553
2023 Ward RD, Tran JS, Banta AB, Bacon EE, Rose WE, Peters JM. Essential gene knockdowns reveal genetic vulnerabilities and antibiotic sensitivities in . Mbio. e0205123. PMID 38126769 DOI: 10.1128/mbio.02051-23  0.532
2023 Enright AL, Banta AB, Ward RD, Rivera Vazquez J, Felczak MM, Wolfe MB, TerAvest MA, Amador-Noguez D, Peters JM. The genetics of aerotolerant growth in an alphaproteobacterium with a naturally reduced genome. Mbio. e0148723. PMID 37905909 DOI: 10.1128/mbio.01487-23  0.579
2023 Yu MA, Banta AB, Ward RD, Prasad NK, Kwon MS, Rosenberg OS, Peters JM. Investigating Pseudomonas aeruginosa Gene Function During Pathogenesis Using Mobile-CRISPRi. Methods in Molecular Biology (Clifton, N.J.). 2721: 13-32. PMID 37819512 DOI: 10.1007/978-1-0716-3473-8_2  0.546
2023 Hall AN, Hall BW, Kinney KJ, Olsen GG, Banta AB, Noguera DR, Donohue TJ, Peters JM. Tools for Genetic Engineering and Gene Expression Control in and . Biorxiv : the Preprint Server For Biology. PMID 37662258 DOI: 10.1101/2023.08.25.554875  0.532
2023 Ward RD, Tran JS, Banta AB, Bacon EE, Rose WE, Peters JM. Essential Gene Knockdowns Reveal Genetic Vulnerabilities and Antibiotic Sensitivities in . Biorxiv : the Preprint Server For Biology. PMID 37577569 DOI: 10.1101/2023.08.02.551708  0.566
2020 Banta AB, Ward RD, Tran JS, Bacon EE, Peters JM. Programmable Gene Knockdown in Diverse Bacteria Using Mobile-CRISPRi. Current Protocols in Microbiology. 59: e130. PMID 33332762 DOI: 10.1002/cpmc.130  0.541
2020 Banta AB, Enright AL, Siletti C, Peters JM. A High-efficacy CRISPRi System for Gene Function Discovery in . Applied and Environmental Microbiology. PMID 32978126 DOI: 10.1128/AEM.01621-20  0.551
2019 Cartagena AJ, Banta AB, Sathyan N, Ross W, Gourse RL, Campbell EA, Darst SA. Structural basis for transcription activation by Crl through tethering of σ and RNA polymerase. Proceedings of the National Academy of Sciences of the United States of America. PMID 31484766 DOI: 10.1073/Pnas.1910827116  0.548
2018 Lee AK, Banta AB, Wei JH, Kiemle DJ, Feng J, Giner JL, Welander PV. C-4 sterol demethylation enzymes distinguish bacterial and eukaryotic sterol synthesis. Proceedings of the National Academy of Sciences of the United States of America. PMID 29784781 DOI: 10.1073/Pnas.1802930115  0.691
2016 Banta AB, Wei JH, Gill CC, Giner JL, Welander PV. Synthesis of arborane triterpenols by a bacterial oxidosqualene cyclase. Proceedings of the National Academy of Sciences of the United States of America. PMID 28028245 DOI: 10.1073/Pnas.1617231114  0.687
2015 Banta AB, Wei JH, Welander PV. A distinct pathway for tetrahymanol synthesis in bacteria. Proceedings of the National Academy of Sciences of the United States of America. 112: 13478-83. PMID 26483502 DOI: 10.1073/Pnas.1511482112  0.687
2014 Banta AB, Cuff ME, Lin H, Myers AR, Ross W, Joachimiak A, Gourse RL. Structure of the RNA polymerase assembly factor Crl and identification of its interaction surface with sigma S. Journal of Bacteriology. 196: 3279-88. PMID 25002538 DOI: 10.1128/Jb.01910-14  0.585
2014 Ferrera I, Banta AB, Reysenbach AL. Spatial patterns of Aquificales in deep-sea vents along the Eastern Lau Spreading Center (SW Pacific). Systematic and Applied Microbiology. 37: 442-8. PMID 24862554 DOI: 10.1016/J.Syapm.2014.04.002  0.598
2013 Banta AB, Chumanov RS, Yuan AH, Lin H, Campbell EA, Burgess RR, Gourse RL. Key features of σS required for specific recognition by Crl, a transcription factor promoting assembly of RNA polymerase holoenzyme. Proceedings of the National Academy of Sciences of the United States of America. 110: 15955-60. PMID 24043782 DOI: 10.1073/Pnas.1311642110  0.591
2008 Costanzo A, Nicoloff H, Barchinger SE, Banta AB, Gourse RL, Ades SE. ppGpp and DksA likely regulate the activity of the extracytoplasmic stress factor sigmaE in Escherichia coli by both direct and indirect mechanisms. Molecular Microbiology. 67: 619-32. PMID 18086212 DOI: 10.1111/J.1365-2958.2007.06072.X  0.556
2007 Houghton JL, Seyfried WE, Banta AB, Reysenbach AL. Continuous enrichment culturing of thermophiles under sulfate and nitrate-reducing conditions and at deep-sea hydrostatic pressures Extremophiles. 11: 371-382. PMID 17221162 DOI: 10.1007/S00792-006-0049-7  0.344
2007 Sokolova T, Hanel J, Onyenwoke RU, Reysenbach A-, Banta A, Geyer R, González JM, Whitman WB, Wiegel J. Novel chemolithotrophic, thermophilic, anaerobic bacteria Thermolithobacter ferrireducens gen. nov., sp. nov. and Thermolithobacter carboxydivorans sp. nov. Extremophiles. 11: 145-157. PMID 17021657 DOI: 10.1007/S00792-006-0022-5  0.351
2007 Ferrera I, Longhorn S, Banta AB, Liu Y, Preston D, Reysenbach AL. Diversity of 16S rRNA gene, ITS region and aclB gene of the Aquificales Extremophiles. 11: 57-64. PMID 16988757 DOI: 10.1007/S00792-006-0009-2  0.405
2006 L'Haridon S, Reysenbach A-, Tindall BJ, Schönheit P, Banta A, Johnsen U, Schumann P, Gambacorta A, Stackebrandt E, Jeanthon C. Desulfurobacterium atlanticum sp. nov., Desulfurobacterium pacificum sp. nov. and Thermovibrio guaymasensis sp. nov., three thermophilic members of the Desulfurobacteriaceae fam. nov., a deep branching lineage within the Bacteria. International Journal of Systematic and Evolutionary Microbiology. 56: 2843-2852. PMID 17158986 DOI: 10.1099/Ijs.0.63994-0  0.356
2006 Reysenbach AL, Liu Y, Banta AB, Beveridge TJ, Kirshtein JD, Schouten S, Tivey MK, Von Damm KL, Voytek MA. A ubiquitous thermoacidophilic archaeon from deep-sea hydrothermal vents. Nature. 442: 444-7. PMID 16871216 DOI: 10.1038/Nature04921  0.624
2005 Nakagawa S, Shtaih Z, Banta A, Beveridge TJ, Sako Y, Reysenbach A-. Sulfurihydrogenibium yellowstonense sp. nov., an extremely thermophilic, facultatively heterotrophic, sulfur-oxidizing bacterium from Yellowstone National Park, and emended descriptions of the genus Sulfurihydrogenibium, Sulfurihydrogenibium subterraneum and Sulfurihydrogenibium azorense. International Journal of Systematic and Evolutionary Microbiology. 55: 2263-2268. PMID 16280480 DOI: 10.1099/Ijs.0.63708-0  0.346
2004 Moussard H, L'Haridon S, Tindall BJ, Banta A, Schumann P, Stackebrandt E, Reysenbach AL, Jeanthon C. Thermodesulfatator indicus gen. nov., sp. nov., a novel thermophilic chemolithoautotrophic sulfate-reducing bacterium isolated from the Central Indian Ridge. International Journal of Systematic and Evolutionary Microbiology. 54: 227-233. PMID 14742485 DOI: 10.1099/Ijs.0.02669-0  0.367
2004 Lehman RM, O'Connell SP, Banta A, Fredrickson JK, Reysenbach AL, Kieft TL, Colwell FS. Microbiological comparison of core and groundwater samples collected from a fractured basalt aquifer with that of dialysis chambers incubated in Situ Geomicrobiology Journal. 21: 169-182. DOI: 10.1080/01490450490275848  0.588
2003 L'Haridon S, Reysenbach AL, Banta A, Messner P, Schumann P, Stackebrandt E, Jeanthon C. Methanocaldococcus indicus sp. nov., a novel hyperthermophilic methanogen isolated from the Central Indian Ridge. International Journal of Systematic and Evolutionary Microbiology. 53: 1931-5. PMID 14657125 DOI: 10.1099/Ijs.0.02700-0  0.354
2003 Hoek J, Banta A, Hubler F, Reysenbach A. Microbial diversity of a sulphide spire located in the Edmond deep-sea hydrothermal vent field on the Central Indian Ridge Geobiology. 1: 119-127. DOI: 10.1046/J.1472-4669.2003.00015.X  0.649
2002 Jeanthon C, L'Haridon S, Cueff V, Banta A, Reysenbach AL, Prieur D. Thermodesulfobacterium hydrogeniphilum sp. nov., a thermophilic, chemolithoautotrophic, sulfate-reducing bacterium isolated from a deep-sea hydrothermal vent at Guaymas Basin, and emendation of the genus Thermodesulfobacterium. International Journal of Systematic and Evolutionary Microbiology. 52: 765-72. PMID 12054236 DOI: 10.1099/00207713-52-3-765  0.61
2001 Van Dover CL, Humphris SE, Fornari D, Cavanaugh CM, Collier R, Goffredi SK, Hashimoto J, Lilley MD, Reysenbach AL, Shank TM, Von Damm KL, Banta A, Gallant RM, Gotz D, Green D, et al. Biogeography and ecological setting of Indian Ocean hydrothermal vents. Science (New York, N.Y.). 294: 818-23. PMID 11557843 DOI: 10.1126/Science.1064574  0.33
2000 Reysenbach AL, Banta AB, Boone DR, Cary SC, Luther GW. Microbial essentials at hydrothermal vents Nature. 404: 835. PMID 10786781 DOI: 10.1038/35009029  0.609
2000 Deng Y, Madan A, Banta AB, Friedman C, Trask BJ, Hood L, Li L. Characterization, chromosomal localization, and the complete 30-kb DNA sequence of the human Jagged2 (JAG2) gene. Genomics. 63: 133-8. PMID 10662552 DOI: 10.1006/Geno.1999.6045  0.501
1998 Li L, Huang GM, Banta AB, Deng Y, Smith T, Dong P, Friedman C, Chen L, Trask BJ, Spies T, Rowen L, Hood L. Cloning, characterization, and the complete 56.8-kilobase DNA sequence of the human NOTCH4 gene. Genomics. 51: 45-58. PMID 9693032 DOI: 10.1006/Geno.1998.5330  0.499
1998 Li L, Milner LA, Deng Y, Iwata M, Banta A, Graf L, Marcovina S, Friedman C, Trask BJ, Hood L, Torok-Storb B. The human homolog of rat Jagged1 expressed by marrow stroma inhibits differentiation of 32D cells through interaction with Notch1. Immunity. 8: 43-55. PMID 9462510 DOI: 10.1016/S1074-7613(00)80457-4  0.434
1996 Haas ES, Banta AB, Harris JK, Pace NR, Brown JW. Structure and evolution of ribonuclease P RNA in Gram-positive bacteria. Nucleic Acids Research. 24: 4775-82. PMID 8972865 DOI: 10.1093/Nar/24.23.4775  0.328
1992 Banta AB, Haas ES, Brown JW, Pace NR. Sequence of the ribonuclease P RNA gene from the cyanobacterium Anacystis nidulans. Nucleic Acids Research. 20: 911. PMID 1371871 DOI: 10.1093/Nar/20.4.911  0.317
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