John D. Venable, Ph.D. - Publications

2001 University of Texas at Austin, Austin, Texas, U.S.A. 
Analytical Chemistry

23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Khare S, Nagle AS, Biggart A, Lai YH, Liang F, Davis LC, Barnes SW, Mathison CJ, Myburgh E, Gao MY, Gillespie JR, Liu X, Tan JL, Stinson M, Rivera IC, ... ... Venable JD, et al. Proteasome inhibition for treatment of leishmaniasis, Chagas disease and sleeping sickness. Nature. PMID 27501246 DOI: 10.1038/nature19339  1
2015 Park IH, Venable JD, Steckler C, Cellitti SE, Lesley SA, Spraggon G, Brock A. Estimation of Hydrogen-Exchange Protection Factors from MD Simulation Based on Amide Hydrogen Bonding Analysis. Journal of Chemical Information and Modeling. 55: 1914-25. PMID 26241692 DOI: 10.1021/acs.jcim.5b00185  1
2015 Xu T, Park SK, Venable JD, Wohlschlegel JA, Diedrich JK, Cociorva D, Lu B, Liao L, Hewel J, Han X, Wong CC, Fonslow B, Delahunty C, Gao Y, Shah H, et al. ProLuCID: An improved SEQUEST-like algorithm with enhanced sensitivity and specificity. Journal of Proteomics. PMID 26171723 DOI: 10.1016/j.jprot.2015.07.001  1
2015 Venable JD, Steckler C, Ou W, Grünewald J, Agarwalla S, Brock A. Isotope-Coded Labeling for Accelerated Protein Interaction Profiling Using MS. Analytical Chemistry. 87: 7540-4. PMID 26151661 DOI: 10.1021/acs.analchem.5b01410  1
2013 Venable JD, Scuba W, Brock A. Feature based retention time alignment for improved HDX MS analysis. Journal of the American Society For Mass Spectrometry. 24: 642-5. PMID 23430702 DOI: 10.1007/s13361-012-0566-9  1
2012 Venable JD, Okach L, Agarwalla S, Brock A. Subzero temperature chromatography for reduced back-exchange and improved dynamic range in amide hydrogen/deuterium exchange mass spectrometry. Analytical Chemistry. 84: 9601-8. PMID 23025328 DOI: 10.1021/ac302488h  1
2009 Wong CC, Cociorva D, Venable JD, Xu T, Yates JR. Comparison of different signal thresholds on data dependent sampling in Orbitrap and LTQ mass spectrometry for the identification of peptides and proteins in complex mixtures. Journal of the American Society For Mass Spectrometry. 20: 1405-14. PMID 19467883 DOI: 10.1016/j.jasms.2009.04.007  1
2008 Park SK, Venable JD, Xu T, Yates JR. A quantitative analysis software tool for mass spectrometry-based proteomics. Nature Methods. 5: 319-22. PMID 18345006 DOI: 10.1038/nmeth.1195  1
2008 Usaite R, Wohlschlegel J, Venable JD, Park SK, Nielsen J, Olsson L, Yates Iii JR. Characterization of global yeast quantitative proteome data generated from the wild-type and glucose repression saccharomyces cerevisiae strains: the comparison of two quantitative methods. Journal of Proteome Research. 7: 266-75. PMID 18173223 DOI: 10.1021/pr700580m  1
2007 McClatchy DB, Liao L, Park SK, Venable JD, Yates JR. Quantification of the synaptosomal proteome of the rat cerebellum during post-natal development. Genome Research. 17: 1378-88. PMID 17675365 DOI: 10.1101/gr.6375007  1
2007 Dong MQ, Venable JD, Au N, Xu T, Park SK, Cociorva D, Johnson JR, Dillin A, Yates JR. Quantitative mass spectrometry identifies insulin signaling targets in C. elegans. Science (New York, N.Y.). 317: 660-3. PMID 17673661 DOI: 10.1126/science.1139952  1
2007 McClatchy DB, Dong MQ, Wu CC, Venable JD, Yates JR. 15N metabolic labeling of mammalian tissue with slow protein turnover. Journal of Proteome Research. 6: 2005-10. PMID 17375949 DOI: 10.1021/pr060599n  1
2007 Venable JD, Wohlschlegel J, McClatchy DB, Park SK, Yates JR. Relative quantification of stable isotope labeled peptides using a linear ion trap-Orbitrap hybrid mass spectrometer. Analytical Chemistry. 79: 3056-64. PMID 17367114 DOI: 10.1021/ac062054i  1
2006 Motoyama A, Venable JD, Ruse CI, Yates JR. Automated ultra-high-pressure multidimensional protein identification technology (UHP-MudPIT) for improved peptide identification of proteomic samples. Analytical Chemistry. 78: 5109-18. PMID 16841936 DOI: 10.1021/ac060354u  1
2006 Venable JD, Xu T, Cociorva D, Yates JR. Cross-correlation algorithm for calculation of peptide molecular weight from tandem mass spectra. Analytical Chemistry. 78: 1921-9. PMID 16536429 DOI: 10.1021/ac051636h  1
2006 Cantin GT, Venable JD, Cociorva D, Yates JR. Quantitative phosphoproteomic analysis of the tumor necrosis factor pathway. Journal of Proteome Research. 5: 127-34. PMID 16396503 DOI: 10.1021/pr050270m  1
2006 Cao H, Deterding LJ, Venable JD, Kennington EA, Yates JR, Tomer KB, Blackshear PJ. Identification of the anti-inflammatory protein tristetraprolin as a hyperphosphorylated protein by mass spectrometry and site-directed mutagenesis. The Biochemical Journal. 394: 285-97. PMID 16262601 DOI: 10.1042/BJ20051316  1
2004 Venable JD, Dong MQ, Wohlschlegel J, Dillin A, Yates JR. Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra. Nature Methods. 1: 39-45. PMID 15782151 DOI: 10.1038/nmeth705  1
2004 Venable JD, Yates JR. Impact of ion trap tandem mass spectra variability on the identification of peptides. Analytical Chemistry. 76: 2928-37. PMID 15144207 DOI: 10.1021/ac0348219  1
2003 Balsanek WJ, Venable JD, Holcombe JA. Generation of a square wave inductively coupled plasma scanning mass spectrometry signal using electrothermal vaporization sample introduction Journal of Analytical Atomic Spectrometry. 18: 59-64. DOI: 10.1039/b206143k  1
2002 Venable JD, Langer D, Holcombe JA. Optimizing the multielement analysis capabilities of an ICP quadrupole mass spectrometer using electrothermal vaporization sample introduction. Analytical Chemistry. 74: 3744-53. PMID 12175162 DOI: 10.1021/ac0110303  1
2001 Venable JD, Detwiler M, Holcombe JA. Multiplexed electrothermal vaporization sample introduction system for inductively coupled plasma spectrometry Spectrochimica Acta - Part B Atomic Spectroscopy. 56: 1697-1706. DOI: 10.1016/S0584-8547(01)00279-8  1
2000 Venable JD, Holcombe JA. Signal enhancements produced from externally generated 'carrier' particles in electrothermal vaporization-inductively coupled plasma mass spectrometry Spectrochimica Acta, Part B: Atomic Spectroscopy. 55: 753-766.  1
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