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John D. Venable, Ph.D. - Publications

Affiliations: 
2001 University of Texas at Austin, Austin, Texas, U.S.A. 
Area:
Analytical Chemistry
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21/46 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Xu T, Park SK, Venable JD, Wohlschlegel JA, Diedrich JK, Cociorva D, Lu B, Liao L, Hewel J, Han X, Wong CC, Fonslow B, Delahunty C, Gao Y, Shah H, et al. ProLuCID: An improved SEQUEST-like algorithm with enhanced sensitivity and specificity. Journal of Proteomics. PMID 26171723 DOI: 10.1016/J.Jprot.2015.07.001  0.32
2009 Wong CC, Cociorva D, Venable JD, Xu T, Yates JR. Comparison of different signal thresholds on data dependent sampling in Orbitrap and LTQ mass spectrometry for the identification of peptides and proteins in complex mixtures. Journal of the American Society For Mass Spectrometry. 20: 1405-14. PMID 19467883 DOI: 10.1016/J.Jasms.2009.04.007  0.431
2008 Park SK, Venable JD, Xu T, Yates JR. A quantitative analysis software tool for mass spectrometry-based proteomics. Nature Methods. 5: 319-22. PMID 18345006 DOI: 10.1038/Nmeth.1195  0.394
2008 Lu B, Motoyama A, Ruse C, Venable J, Yates JR. Improving protein identification sensitivity by combining MS and MS/MS information for shotgun proteomics using LTQ-Orbitrap high mass accuracy data. Analytical Chemistry. 80: 2018-25. PMID 18275164 DOI: 10.1021/Ac701697W  0.37
2007 Dong MQ, Venable JD, Au N, Xu T, Park SK, Cociorva D, Johnson JR, Dillin A, Yates JR. Quantitative mass spectrometry identifies insulin signaling targets in C. elegans. Science (New York, N.Y.). 317: 660-3. PMID 17673661 DOI: 10.1126/Science.1139952  0.337
2007 Venable JD, Wohlschlegel J, McClatchy DB, Park SK, Yates JR. Relative quantification of stable isotope labeled peptides using a linear ion trap-Orbitrap hybrid mass spectrometer. Analytical Chemistry. 79: 3056-64. PMID 17367114 DOI: 10.1021/Ac062054I  0.408
2006 Motoyama A, Venable JD, Ruse CI, Yates JR. Automated ultra-high-pressure multidimensional protein identification technology (UHP-MudPIT) for improved peptide identification of proteomic samples. Analytical Chemistry. 78: 5109-18. PMID 16841936 DOI: 10.1021/Ac060354U  0.354
2006 Venable JD, Xu T, Cociorva D, Yates JR. Cross-correlation algorithm for calculation of peptide molecular weight from tandem mass spectra. Analytical Chemistry. 78: 1921-9. PMID 16536429 DOI: 10.1021/Ac051636H  0.375
2006 Cantin GT, Venable JD, Cociorva D, Yates JR. Quantitative phosphoproteomic analysis of the tumor necrosis factor pathway. Journal of Proteome Research. 5: 127-34. PMID 16396503 DOI: 10.1021/Pr050270M  0.324
2006 Cao H, Deterding LJ, Venable JD, Kennington EA, Yates JR, Tomer KB, Blackshear PJ. Identification of the anti-inflammatory protein tristetraprolin as a hyperphosphorylated protein by mass spectrometry and site-directed mutagenesis. The Biochemical Journal. 394: 285-97. PMID 16262601 DOI: 10.1042/Bj20051316  0.307
2005 Zhu W, Venable J, Giometti CS, Khare T, Tollaksen S, Ahrendt AJ, Yates JR. Large-scale muLC-MS/MS for silver- and Coomassie blue-stained polyacrylamide gels. Electrophoresis. 26: 4495-507. PMID 16315175 DOI: 10.1002/Elps.200500093  0.36
2004 Venable JD, Dong MQ, Wohlschlegel J, Dillin A, Yates JR. Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra. Nature Methods. 1: 39-45. PMID 15782151 DOI: 10.1038/Nmeth705  0.454
2004 McDonald WH, Tabb DL, Sadygov RG, MacCoss MJ, Venable J, Graumann J, Johnson JR, Cociorva D, Yates JR. MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications. Rapid Communications in Mass Spectrometry : Rcm. 18: 2162-8. PMID 15317041 DOI: 10.1002/Rcm.1603  0.346
2004 Venable JD, Yates JR. Impact of ion trap tandem mass spectra variability on the identification of peptides. Analytical Chemistry. 76: 2928-37. PMID 15144207 DOI: 10.1021/Ac0348219  0.36
2003 Balsanek WJ, Venable JD, Holcombe JA. Generation of a square wave inductively coupled plasma scanning mass spectrometry signal using electrothermal vaporization sample introduction Journal of Analytical Atomic Spectrometry. 18: 59-64. DOI: 10.1039/B206143K  0.487
2002 Venable JD, Langer D, Holcombe JA. Optimizing the multielement analysis capabilities of an ICP quadrupole mass spectrometer using electrothermal vaporization sample introduction. Analytical Chemistry. 74: 3744-53. PMID 12175162 DOI: 10.1021/Ac0110303  0.699
2001 Venable JD, Detwiler M, Holcombe JA. Multiplexed electrothermal vaporization sample introduction system for inductively coupled plasma spectrometry Spectrochimica Acta - Part B Atomic Spectroscopy. 56: 1697-1706. DOI: 10.1016/S0584-8547(01)00279-8  0.606
2001 Venable J, Holcombe JA. Peak broadening from an electrothermal vaporization sample introduction source into an inductively coupled plasma Spectrochimica Acta Part B: Atomic Spectroscopy. 56: 1431-1440. DOI: 10.1016/S0584-8547(01)00264-6  0.63
2000 Venable J, Williamson T, Holcombe JA. Characterization of pressure pulse and carrier gas flow changes resulting from pulsed heating in ETV-ICP-MS Journal of Analytical Atomic Spectrometry. 15: 1329-1334. DOI: 10.1039/B002205P  0.567
2000 Venable JD, Holcombe JA. Signal enhancements produced from externally generated ‘carrier’ particles in electrothermal vaporization-inductively coupled plasma mass spectrometry Spectrochimica Acta Part B: Atomic Spectroscopy. 55: 753-766. DOI: 10.1016/S0584-8547(00)00205-6  0.633
2000 Venable JD, Holcombe JA. Signal enhancements produced from externally generated 'carrier' particles in electrothermal vaporization-inductively coupled plasma mass spectrometry Spectrochimica Acta, Part B: Atomic Spectroscopy. 55: 753-766.  0.358
Low-probability matches (unlikely to be authored by this person)
2007 McClatchy DB, Liao L, Park SK, Venable JD, Yates JR. Quantification of the synaptosomal proteome of the rat cerebellum during post-natal development. Genome Research. 17: 1378-88. PMID 17675365 DOI: 10.1101/Gr.6375007  0.282
2008 Usaite R, Wohlschlegel J, Venable JD, Park SK, Nielsen J, Olsson L, Yates Iii JR. Characterization of global yeast quantitative proteome data generated from the wild-type and glucose repression saccharomyces cerevisiae strains: the comparison of two quantitative methods. Journal of Proteome Research. 7: 266-75. PMID 18173223 DOI: 10.1021/Pr700580M  0.27
2006 Yates JR, Schieltz D, Koller A, Venable J. Peptide Sequencing by Tandem Mass Spectrometry Cell Biology, Four-Volume Set. 4: 383-390. DOI: 10.1016/B978-012164730-8/50234-3  0.257
2007 McClatchy DB, Dong MQ, Wu CC, Venable JD, Yates JR. 15N metabolic labeling of mammalian tissue with slow protein turnover. Journal of Proteome Research. 6: 2005-10. PMID 17375949 DOI: 10.1021/Pr060599N  0.253
2005 Page LJ, Suk JY, Huff ME, Lim HJ, Venable J, Yates J, Kelly JW, Balch WE. Metalloendoprotease cleavage triggers gelsolin amyloidogenesis. The Embo Journal. 24: 4124-32. PMID 16281052 DOI: 10.1038/Sj.Emboj.7600872  0.231
2012 Venable JD, Okach L, Agarwalla S, Brock A. Subzero temperature chromatography for reduced back-exchange and improved dynamic range in amide hydrogen/deuterium exchange mass spectrometry. Analytical Chemistry. 84: 9601-8. PMID 23025328 DOI: 10.1021/ac302488h  0.228
2006 Wang X, Venable J, LaPointe P, Hutt DM, Koulov AV, Coppinger J, Gurkan C, Kellner W, Matteson J, Plutner H, Riordan JR, Kelly JW, Yates JR, Balch WE. Hsp90 cochaperone Aha1 downregulation rescues misfolding of CFTR in cystic fibrosis. Cell. 127: 803-15. PMID 17110338 DOI: 10.1016/J.Cell.2006.09.043  0.223
2013 Venable JD, Scuba W, Brock A. Feature based retention time alignment for improved HDX MS analysis. Journal of the American Society For Mass Spectrometry. 24: 642-5. PMID 23430702 DOI: 10.1007/s13361-012-0566-9  0.223
2015 Venable JD, Steckler C, Ou W, Grünewald J, Agarwalla S, Brock A. Isotope-Coded Labeling for Accelerated Protein Interaction Profiling Using MS. Analytical Chemistry. 87: 7540-4. PMID 26151661 DOI: 10.1021/Acs.Analchem.5B01410  0.21
2019 Hudgens JW, Gallagher ES, Karageorgos I, Anderson KW, Filliben JJ, Huang RY, Chen G, Bou-Assaf GM, Espada A, Chalmers MJ, Harguindey E, Zhang HM, Walters BT, Zhang J, Venable JD, et al. Interlaboratory Comparison of Hydrogen-Deuterium Exchange Mass Spectrometry Measurements of the Fab fragment of NISTmAb. Analytical Chemistry. PMID 31045344 DOI: 10.1021/Acs.Analchem.9B01100  0.209
2019 Hudgens JW, Gallagher ES, Karageorgos I, Anderson KW, Huang RY, Chen G, Bou-Assaf GM, Espada A, Chalmers MJ, Harguindey E, Zhang HM, Walters BT, Zhang J, Venable J, Steckler C, et al. Hydrogen-Deuterium Exchange Mass Spectrometry (HDX-MS) Centroid Data Measured between 3.6 °C and 25.4 °C for the Fab Fragment of NISTmAb. Journal of Research of the National Institute of Standards and Technology. 124: 1-7. PMID 34877153 DOI: 10.6028/jres.124.009  0.205
2015 Park IH, Venable JD, Steckler C, Cellitti SE, Lesley SA, Spraggon G, Brock A. Estimation of Hydrogen-Exchange Protection Factors from MD Simulation Based on Amide Hydrogen Bonding Analysis. Journal of Chemical Information and Modeling. 55: 1914-25. PMID 26241692 DOI: 10.1021/acs.jcim.5b00185  0.184
2010 Venable JD, Ameriks MK, Blevitt JM, Thurmond RL, Fung-Leung WP. Phosphoinositide 3-kinase gamma (PI3Kgamma) inhibitors for the treatment of inflammation and autoimmune disease. Recent Patents On Inflammation & Allergy Drug Discovery. 4: 1-15. PMID 20017720 DOI: 10.2174/187221310789895603  0.093
2015 Tichenor MS, Thurmond RL, Venable JD, Savall BM. Functional Profiling of 2-Aminopyrimidine Histamine H4 Receptor Modulators. Journal of Medicinal Chemistry. PMID 25993395 DOI: 10.1021/acs.jmedchem.5b00516  0.066
2009 Ameriks MK, Venable JD. Small molecule inhibitors of phosphoinositide 3-kinase (PI3K) delta and gamma. Current Topics in Medicinal Chemistry. 9: 738-53. PMID 19689378 DOI: 10.2174/156802609789044434  0.058
2010 Savall BM, Edwards JP, Venable JD, Buzard DJ, Thurmond R, Hack M, McGovern P. Agonist/antagonist modulation in a series of 2-aryl benzimidazole H4 receptor ligands. Bioorganic & Medicinal Chemistry Letters. 20: 3367-71. PMID 20452213 DOI: 10.1016/j.bmcl.2010.04.017  0.048
2005 Venable JD, Cai H, Chai W, Dvorak CA, Grice CA, Jablonowski JA, Shah CR, Kwok AK, Ly KS, Pio B, Wei J, Desai PJ, Jiang W, Nguyen S, Ling P, et al. Preparation and biological evaluation of indole, benzimidazole, and thienopyrrole piperazine carboxamides: potent human histamine h(4) antagonists. Journal of Medicinal Chemistry. 48: 8289-98. PMID 16366610 DOI: 10.1021/jm0502081  0.038
2008 Carey R, Kleiman G, Russell M, Venable JD. Online courses for math teachers: Comparing self-paced and facilitated cohort approaches Journal of Technology, Learning, and Assessment. 7.  0.037
2003 Jablonowski JA, Grice CA, Chai W, Dvorak CA, Venable JD, Kwok AK, Ly KS, Wei J, Baker SM, Desai PJ, Jiang W, Wilson SJ, Thurmond RL, Karlsson L, Edwards JP, et al. The first potent and selective non-imidazole human histamine H4 receptor antagonists. Journal of Medicinal Chemistry. 46: 3957-60. PMID 12954048 DOI: 10.1021/jm0341047  0.034
2016 Khare S, Nagle AS, Biggart A, Lai YH, Liang F, Davis LC, Barnes SW, Mathison CJ, Myburgh E, Gao MY, Gillespie JR, Liu X, Tan JL, Stinson M, Rivera IC, ... ... Venable JD, et al. Proteasome inhibition for treatment of leishmaniasis, Chagas disease and sleeping sickness. Nature. PMID 27501246 DOI: 10.1038/nature19339  0.032
2006 Venable JD, Thurmond RL. Development and chemistry of histamine H4 receptor ligands as potential modulators of inflammatory and allergic responses Anti-Inflammatory and Anti-Allergy Agents in Medicinal Chemistry. 5: 307-322.  0.03
2006 Zhang M, Venable JD, Thurmond RL. The histamine H4 receptor in autoimmune disease. Expert Opinion On Investigational Drugs. 15: 1443-52. PMID 17040202 DOI: 10.1517/13543784.15.11.1443  0.029
2005 Magnus P, Venable JD, Shen L, Lynch V. Some reactions of persistent benzofuranone radicals related to the 'old' diazonamide structure Tetrahedron Letters. 46: 707-710. DOI: 10.1016/J.Tetlet.2004.11.103  0.023
2018 Sabatos-Peyton CA, Nevin J, Brock A, Venable JD, Tan DJ, Kassam N, Xu F, Taraszka J, Wesemann L, Pertel T, Acharya N, Klapholz M, Etminan Y, Jiang X, Huang YH, et al. Blockade of Tim-3 binding to phosphatidylserine and CEACAM1 is a shared feature of anti-Tim-3 antibodies that have functional efficacy. Oncoimmunology. 7: e1385690. PMID 29308307 DOI: 10.1080/2162402X.2017.1385690  0.019
2010 Venable JD, Kindrachuk DE, Peterson ML, Edwards JP. Synthesis of 3-methoxy-quinoxalin-2-ones from methyl trimethoxyacetate and phenylenediamines Tetrahedron Letters. 51: 337-339. DOI: 10.1016/j.tetlet.2009.11.017  0.01
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