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Mark Hildebrand - Publications

Affiliations: 
Marine biology University of California, San Diego, La Jolla, CA 
Area:
Bioinformatics Biology, Molecular Biology
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54 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Yee DP, Hildebrand M, Tresguerres M. Dynamic subcellular translocation of V-type H -ATPase is essential for biomineralization of the diatom silica cell wall. The New Phytologist. PMID 31746463 DOI: 10.1111/Nph.16329  0.321
2019 Gaidarenko O, Sathoff C, Staub K, Huesemann MH, Vernet M, Hildebrand M. Timing is everything: Diel metabolic and physiological changes in the diatom Cyclotella cryptica grown in simulated outdoor conditions Algal Research. 42: 101598. DOI: 10.1016/J.Algal.2019.101598  0.306
2018 Hildebrand M, Lerch SJL, Shrestha RP. Understanding Diatom Cell Wall Silicification—Moving Forward Frontiers in Marine Science. 5. DOI: 10.3389/Fmars.2018.00125  0.312
2018 Abbriano R, Vardar N, Yee D, Hildebrand M. Manipulation of a glycolytic regulator alters growth and carbon partitioning in the marine diatom Thalassiosira pseudonana Algal Research. 32: 250-258. DOI: 10.1016/J.Algal.2018.03.018  0.342
2017 Tesson B, Lerch SJL, Hildebrand M. Characterization of a New Protein Family Associated With the Silica Deposition Vesicle Membrane Enables Genetic Manipulation of Diatom Silica. Scientific Reports. 7: 13457. PMID 29044150 DOI: 10.1038/S41598-017-13613-8  0.304
2017 Shrestha RP, Hildebrand M. Development of a silicon limitation inducible expression system for recombinant protein production in the centric diatoms Thalassiosira pseudonana and Cyclotella cryptica. Microbial Cell Factories. 16: 145. PMID 28818078 DOI: 10.1186/S12934-017-0760-3  0.341
2017 Davis A, Crum LT, Corbeil LB, Hildebrand M. Expression of Histophilus somni IbpA DR2 protective antigen in the diatom Thalassiosira pseudonana. Applied Microbiology and Biotechnology. PMID 28405704 DOI: 10.1007/S00253-017-8267-8  0.334
2017 Hildebrand M, Manandhar-Shrestha K, Abbriano R. Effects of chrysolaminarin synthase knockdown in the diatom Thalassiosira pseudonana : Implications of reduced carbohydrate storage relative to green algae Algal Research. 23: 66-77. DOI: 10.1016/J.Algal.2017.01.010  0.381
2016 Davis A, Abbriano R, Smith SR, Hildebrand M. Clarification of Photorespiratory Processes and the Role of Malic Enzyme in Diatoms. Protist. 168: 134-153. PMID 28104538 DOI: 10.1016/J.Protis.2016.10.005  0.57
2016 Traller JC, Cokus SJ, Lopez DA, Gaidarenko O, Smith SR, McCrow JP, Gallaher SD, Podell S, Thompson M, Cook O, Morselli M, Jaroszewicz A, Allen EE, Allen AE, Merchant SS, ... ... Hildebrand M, et al. Genome and methylome of the oleaginous diatom Cyclotella cryptica reveal genetic flexibility toward a high lipid phenotype. Biotechnology For Biofuels. 9: 258. PMID 27933100 DOI: 10.1186/S13068-016-0670-3  0.652
2016 Hildebrand M, Davis A, Abbriano R, Pugsley HR, Traller JC, Smith SR, Shrestha RP, Cook O, Sánchez-Alvarez EL, Manandhar-Shrestha K, Alderete B. Applications of Imaging Flow Cytometry for Microalgae. Methods in Molecular Biology (Clifton, N.J.). 1389: 47-67. PMID 27460237 DOI: 10.1007/978-1-4939-3302-0_4  0.518
2016 Smith SR, Glé C, Abbriano RM, Traller JC, Davis A, Trentacoste E, Vernet M, Allen AE, Hildebrand M. Transcript level coordination of carbon pathways during silicon starvation-induced lipid accumulation in the diatom Thalassiosira pseudonana. The New Phytologist. PMID 26844818 DOI: 10.1111/Nph.13843  0.679
2015 Hildebrand M, Lerch SJ. Diatom silica biomineralization: Parallel development of approaches and understanding. Seminars in Cell & Developmental Biology. PMID 26256954 DOI: 10.1016/J.Semcdb.2015.06.007  0.344
2015 Shrestha RP, Hildebrand M. Evidence for a regulatory role of diatom silicon transporters in cellular silicon responses. Eukaryotic Cell. 14: 29-40. PMID 25380754 DOI: 10.1128/Ec.00209-14  0.373
2015 Manandhar-Shrestha K, Hildebrand M. Characterization and manipulation of a DGAT2 from the diatom Thalassiosira pseudonana: Improved TAG accumulation without detriment to growth, and implications for chloroplast TAG accumulation Algal Research. 12: 239-248. DOI: 10.1016/J.Algal.2015.09.004  0.344
2013 Trentacoste EM, Shrestha RP, Smith SR, Glé C, Hartmann AC, Hildebrand M, Gerwick WH. Metabolic engineering of lipid catabolism increases microalgal lipid accumulation without compromising growth. Proceedings of the National Academy of Sciences of the United States of America. 110: 19748-53. PMID 24248374 DOI: 10.1073/Pnas.1309299110  0.524
2013 Tesson B, Hildebrand M. Characterization and localization of insoluble organic matrices associated with diatom cell walls: insight into their roles during cell wall formation. Plos One. 8: e61675. PMID 23626714 DOI: 10.1371/Journal.Pone.0061675  0.309
2013 Hildebrand M, Abbriano RM, Polle JE, Traller JC, Trentacoste EM, Smith SR, Davis AK. Metabolic and cellular organization in evolutionarily diverse microalgae as related to biofuels production. Current Opinion in Chemical Biology. 17: 506-14. PMID 23538202 DOI: 10.1016/J.Cbpa.2013.02.027  0.55
2013 Traller JC, Hildebrand M. High throughput imaging to the diatom Cyclotella cryptica demonstrates substantial cell-to-cell variability in the rate and extent of triacylglycerol accumulation Algal Research. 2: 244-252. DOI: 10.1016/J.Algal.2013.03.003  0.337
2012 Shrestha RP, Tesson B, Norden-Krichmar T, Federowicz S, Hildebrand M, Allen AE. Whole transcriptome analysis of the silicon response of the diatom Thalassiosira pseudonana. Bmc Genomics. 13: 499. PMID 22994549 DOI: 10.1186/1471-2164-13-499  0.718
2012 Curnow P, Senior L, Knight MJ, Thamatrakoln K, Hildebrand M, Booth PJ. Expression, purification, and reconstitution of a diatom silicon transporter. Biochemistry. 51: 3776-85. PMID 22530967 DOI: 10.1021/Bi3000484  0.335
2012 Hildebrand M, Davis AK, Smith SR, Traller JC, Abbriano R. The place of diatoms in the biofuels industry Biofuels. 3: 221-240. DOI: 10.4155/BFS.11.157  0.51
2012 Smith SR, Abbriano RM, Hildebrand M. Comparative analysis of diatom genomes reveals substantial differences in the organization of carbon partitioning pathways Algal Research. 1: 2-16. DOI: 10.1016/J.Algal.2012.04.003  0.576
2011 Norden-Krichmar TM, Allen AE, Gaasterland T, Hildebrand M. Characterization of the small RNA transcriptome of the diatom, Thalassiosira pseudonana. Plos One. 6: e22870. PMID 21857960 DOI: 10.1371/Journal.Pone.0022870  0.711
2010 Tesson B, Hildebrand M. Dynamics of silica cell wall morphogenesis in the diatom Cyclotella cryptica: substructure formation and the role of microfilaments. Journal of Structural Biology. 169: 62-74. PMID 19729066 DOI: 10.1016/J.Jsb.2009.08.013  0.316
2009 Hildebrand M, Holton G, Joy DC, Doktycz MJ, Allison DP. Diverse and conserved nano- and mesoscale structures of diatom silica revealed by atomic force microscopy. Journal of Microscopy. 235: 172-87. PMID 19659911 DOI: 10.1111/J.1365-2818.2009.03198.X  0.309
2008 Hildebrand M, Doktycz MJ, Allison DP. Application of AFM in understanding biomineral formation in diatoms. PflüGers Archiv : European Journal of Physiology. 456: 127-37. PMID 18058126 DOI: 10.1007/S00424-007-0388-Y  0.317
2007 Sudek S, Lopanik NB, Waggoner LE, Hildebrand M, Anderson C, Liu H, Patel A, Sherman DH, Haygood MG. Identification of the putative bryostatin polyketide synthase gene cluster from "Candidatus Endobugula sertula", the uncultivated microbial symbiont of the marine bryozoan Bugula neritina. Journal of Natural Products. 70: 67-74. PMID 17253852 DOI: 10.1021/Np060361D  0.322
2007 Thamatrakoln K, Hildebrand M. Analysis of Thalassiosira pseudonana silicon transporters indicates distinct regulatory levels and transport activity through the cell cycle. Eukaryotic Cell. 6: 271-9. PMID 17172435 DOI: 10.1128/Ec.00235-06  0.356
2007 Hildebrand M, Frigeri LG, Davis AK. SYNCHRONIZED GROWTH OFTHALASSIOSIRA PSEUDONANA(BACILLARIOPHYCEAE) PROVIDES NOVEL INSIGHTS INTO CELL-WALL SYNTHESIS PROCESSES IN RELATION TO THE CELL CYCLE1 Journal of Phycology. 43: 730-740. DOI: 10.1111/J.1529-8817.2007.00361.X  0.329
2006 Davis AK, Hildebrand M, Palenik B. Gene expression induced by copper stress in the diatom Thalassiosira pseudonana. Eukaryotic Cell. 5: 1157-68. PMID 16835459 DOI: 10.1128/Ec.00042-06  0.326
2006 Frigeri LG, Radabaugh TR, Haynes PA, Hildebrand M. Identification of proteins from a cell wall fraction of the diatom Thalassiosira pseudonana: insights into silica structure formation. Molecular & Cellular Proteomics : McP. 5: 182-93. PMID 16207702 DOI: 10.1074/Mcp.M500174-Mcp200  0.381
2006 Hildebrand M, York E, Kelz JI, Davis AK, Frigeri LG, Allison DP, Doktycz MJ. Nanoscale control of silica morphology and three-dimensional structure during diatom cell wall formation Journal of Materials Research. 21: 2689-2698. DOI: 10.1557/Jmr.2006.0333  0.329
2006 Thamatrakoln K, Alverson AJ, Hildebrand M. Comparative sequence analysis of diatom silicon transporters: Toward a mechanistic model of silicon transport Journal of Phycology. 42: 822-834. DOI: 10.1111/J.1529-8817.2006.00233.X  0.395
2005 Thamatrakoln K, Hildebrand M. Approaches for functional characterization of diatom silicic acid transporters. Journal of Nanoscience and Nanotechnology. 5: 158-66. PMID 15762174 DOI: 10.1166/Jnn.2005.014  0.355
2005 Hildebrand M. Prospects of manipulating diatom silica nanostructure. Journal of Nanoscience and Nanotechnology. 5: 146-57. PMID 15762173 DOI: 10.1166/Jnn.2005.013  0.371
2005 Hildebrand M. CLONING AND FUNCTIONAL CHARACTERIZATION OF AMMONIUM TRANSPORTERS FROM THE MARINE DIATOMCYLINDROTHECA FUSIFORMIS(BACILLARIOPHYCEAE) Journal of Phycology. 41: 105-113. DOI: 10.1111/J.1529-8817.2005.04108.X  0.396
2005 Davis AK, Hildebrand M, Palenik B. A STRESS-INDUCED PROTEIN ASSOCIATED WITH THE GIRDLE BAND REGION OF THE DIATOM THALASSIOSIRA PSEUDONANA (BACILLARIOPHYTA)1 Journal of Phycology. 41: 577-589. DOI: 10.1111/J.1529-8817.2005.00076.X  0.306
2004 Armbrust EV, Berges JA, Bowler C, Green BR, Martinez D, Putnam NH, Zhou S, Allen AE, Apt KE, Bechner M, Brzezinski MA, Chaal BK, Chiovitti A, Davis AK, Demarest MS, ... ... Hildebrand M, et al. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Science (New York, N.Y.). 306: 79-86. PMID 15459382 DOI: 10.1126/Science.1101156  0.589
2004 Hildebrand M, Waggoner LE, Lim GE, Sharp KH, Ridley CP, Haygood MG. Approaches to identify, clone, and express symbiont bioactive metabolite genes. Natural Product Reports. 21: 122-42. PMID 15039839 DOI: 10.1039/B302336M  0.318
2003 Hildebrand M. Biological processing of nanostructured silica in diatoms Progress in Organic Coatings. 47: 256-266. DOI: 10.1016/S0300-9440(03)00142-5  0.366
2000 Hildebrand M, Dahlin K. NITRATE TRANSPORTER GENES FROM THE DIATOM CYLINDROTHECA FUSIFORMIS (BACILLARIOPHYCEAE): mRNA LEVELS CONTROLLED BY NITROGEN SOURCE AND BY THE CELL CYCLE. Journal of Phycology. 36: 702-713. PMID 29542159 DOI: 10.1046/J.1529-8817.2000.99153.X  0.388
2000 Martin-Jézéquel V, Hildebrand M, Brzezinski MA. Silicon metabolism in diatoms: Implications for growth Journal of Phycology. 36: 821-840. DOI: 10.1046/J.1529-8817.2000.00019.X  0.412
2000 Hildebrand M, Dahlin K. CLONING AND CHARACTERIZATION OF NITRATE TRANSPORTER GENES FROM THE DIATOM CYLINDROTHECA FUSIFORMIS Journal of Phycology. 36: 30-30. DOI: 10.1046/J.1529-8817.1999.00001-91.X  0.389
1998 Hildebrand M, Dahlin K, Volcani BE. Characterization of a silicon transporter gene family in Cylindrotheca fusiformis: Sequences, expression analysis, and identification of homologs in other diatoms Molecular and General Genetics. 260: 480-486. PMID 9894919 DOI: 10.1007/S004380050920  0.634
1997 Hildebrand M, Volcani BE, Gassmann W, Schroeder JI. A gene family of silicon transporters. Nature. 385: 688-9. PMID 9034185 DOI: 10.1038/385688B0  0.577
1996 Van Waasbergen LG, Hildebrand M, Tebo BM. Identification and characterization of a gene cluster involved in manganese oxidation by spores of the marine Bacillus sp. strain SG-1 Journal of Bacteriology. 178: 3517-3530. PMID 8655549 DOI: 10.1128/Jb.178.12.3517-3530.1996  0.337
1993 Hildebrand M, Higgins DR, Busser K, Volcani BE. Silicon-responsive cDNA clones isolated from the marine diatom Cylindrotheca fusiformis. Gene. 132: 213-8. PMID 8224866 DOI: 10.1016/0378-1119(93)90198-C  0.638
1992 Jacobs JD, Ludwig JR, Hildebrand M, Kukel A, Feng TY, Ord RW, Volcani BE. Characterization of two circular plasmids from the marine diatom Cylindrotheca fusiformis: plasmids hybridize to chloroplast and nuclear DNA. Molecular & General Genetics : Mgg. 233: 302-10. PMID 1603070 DOI: 10.1007/Bf00587592  0.582
1992 Hildebrand M, Hasegawa P, Ord RW, Thorpe VS, Glass CA, Volcani BE. Nucleotide sequence of diatom plasmids: identification of open reading frames with similarity to site-specific recombinases. Plant Molecular Biology. 19: 759-70. PMID 1322740 DOI: 10.1007/BF00027072  0.571
1991 Hildebrand M, Corey DK, Ludwig JR, Kukel A, Feng TY, Volcani BE. Plasmids in diatom species. Journal of Bacteriology. 173: 5924-7. PMID 1885558 DOI: 10.1128/Jb.173.18.5924-5927.1991  0.573
1988 Hildebrand M, Hallick RB, Passavant CW, Bourque DP. Trans-splicing in chloroplasts: the rps 12 loci of Nicotiana tabacum. Proceedings of the National Academy of Sciences of the United States of America. 85: 372-6. PMID 3422433 DOI: 10.1073/Pnas.85.2.372  0.653
1985 Bard J, Bourque DP, Hildebrand M, Zaitlin D. In vitro expression of chloroplast genes in lysates of higher plant chloroplasts. Proceedings of the National Academy of Sciences of the United States of America. 82: 3983-7. PMID 3858855 DOI: 10.1073/Pnas.82.12.3983  0.667
1985 Hildebrand M, Jurgenson JE, Ramage RT, Bourque DP. Derivation of a physical map of chloroplast DNA from Nicotiana tabacum by two-dimensional gel and computer-aided restriction analysis. Plasmid. 14: 64-79. PMID 2994131 DOI: 10.1016/0147-619X(85)90033-2  0.63
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