James H. Bullard, Ph.D.

Statistical methods, Genomics, R,

Sandrine Dudoit	grad student	2009	UC Berkeley
(Statistical methods and software for high -throughput gene expression experiments.)

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Bashir A, Klammer AA, Robins WP, et al. (2012) A hybrid approach for the automated finishing of bacterial genomes. Nature Biotechnology. 30: 701-7
Bullard JH, Mostovoy Y, Dudoit S, et al. (2010) Polygenic and directional regulatory evolution across pathways in Saccharomyces. Proceedings of the National Academy of Sciences of the United States of America. 107: 5058-63
Bullard JH, Purdom E, Hansen KD, et al. (2010) Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments. Bmc Bioinformatics. 11: 94
Durinck S, Bullard J, Spellman PT, et al. (2009) GenomeGraphs: integrated genomic data visualization with R. Bmc Bioinformatics. 10: 2
Lee A, Hansen KD, Bullard J, et al. (2008) Novel low abundance and transient RNAs in yeast revealed by tiling microarrays and ultra high-throughput sequencing are not conserved across closely related yeast species. Plos Genetics. 4: e1000299