Sandrine Dudoit, PhD

Affiliations: 
Statistics University of California, Berkeley, Berkeley, CA 
Area:
Statistical methods, Genomics, R,
Website:
http://www.stat.berkeley.edu/~sandrine/
Google:
"Sandrine Dudoit"
Cross-listing: MathTree

Children

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Katherine S. Pollard grad student 1998-2003 UC Berkeley
Yan Wang grad student 2006 UC Berkeley
David A. Shilane grad student 2008 UC Berkeley
James H. Bullard grad student 2009 UC Berkeley
Houston N. Gilbert grad student 2009 UC Berkeley
Kasper D. Hansen grad student 2009 UC Berkeley
Thomas J. Sharpton grad student 2004-2009 UC Berkeley
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Publications

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Brann DH, Tsukahara T, Weinreb C, et al. (2020) Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia. Science Advances. 6
Cole MB, Risso D, Wagner A, et al. (2019) Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq. Cell Systems. 8: 315-328.e8
Risso D, Purvis L, Fletcher RB, et al. (2018) clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets. Plos Computational Biology. 14: e1006378
Street K, Risso D, Fletcher RB, et al. (2018) Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics. Bmc Genomics. 19: 477
Gadye L, Das D, Sanchez MA, et al. (2017) Injury Activates Transient Olfactory Stem Cell States with Diverse Lineage Capacities. Cell Stem Cell. 21: 775-790.e9
Gadye L, Das D, Sanchez MA, et al. (2017) Injury Activates Transient Olfactory Stem Cell States with Diverse Lineage Capacities. Cell Stem Cell. 21: 775-790.e9
Perraudeau F, Risso D, Street K, et al. (2017) Bioconductor workflow for single-cell RNA sequencing: Normalization, dimensionality reduction, clustering, and lineage inference. F1000research. 6: 1158
Fletcher RB, Das D, Gadye L, et al. (2017) Deconstructing Olfactory Stem Cell Trajectories at Single-Cell Resolution. Cell Stem Cell
Risso D, Ngai J, Speed TP, et al. (2014) Normalization of RNA-seq data using factor analysis of control genes or samples. Nature Biotechnology. 32: 896-902
Ferreira T, Wilson SR, Choi YG, et al. (2014) Silencing of odorant receptor genes by G protein βγ signaling ensures the expression of one odorant receptor per olfactory sensory neuron. Neuron. 81: 847-59
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