Sandrine Dudoit, PhD

Affiliations: 
Statistics University of California, Berkeley, Berkeley, CA 
Area:
Statistical methods, Genomics, R,
Website:
http://www.stat.berkeley.edu/~sandrine/
Google:
"Sandrine Dudoit"
Cross-listing: MathTree

Children

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Katherine S. Pollard grad student 1998-2003 UC Berkeley
Yan Wang grad student 2006 UC Berkeley
David A. Shilane grad student 2008 UC Berkeley
James H. Bullard grad student 2009 UC Berkeley
Houston N. Gilbert grad student 2009 UC Berkeley
Kasper D. Hansen grad student 2009 UC Berkeley
Thomas J. Sharpton grad student 2004-2009 UC Berkeley
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Publications

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Boileau P, Hejazi NS, Dudoit S. (2020) Exploring High-Dimensional Biological Data with Sparse Contrastive Principal Component Analysis. Bioinformatics (Oxford, England)
Van den Berge K, Roux de Bézieux H, Street K, et al. (2020) Trajectory-based differential expression analysis for single-cell sequencing data. Nature Communications. 11: 1201
Cole MB, Risso D, Wagner A, et al. (2019) Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq. Cell Systems. 8: 315-328.e8
Risso D, Perraudeau F, Gribkova S, et al. (2019) Publisher Correction: A general and flexible method for signal extraction from single-cell RNA-seq data. Nature Communications. 10: 646
Van den Berge K, Perraudeau F, Soneson C, et al. (2018) Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications. Genome Biology. 19: 24
Risso D, Perraudeau F, Gribkova S, et al. (2018) A general and flexible method for signal extraction from single-cell RNA-seq data. Nature Communications. 9: 284
Perraudeau F, Risso D, Street K, et al. (2017) Bioconductor workflow for single-cell RNA sequencing: Normalization, dimensionality reduction, clustering, and lineage inference. F1000research. 6: 1158
Vallejos CA, Risso D, Scialdone A, et al. (2017) Normalizing single-cell RNA sequencing data: challenges and opportunities. Nature Methods
Risso D, Ngai J, Speed TP, et al. (2014) Normalization of RNA-seq data using factor analysis of control genes or samples. Nature Biotechnology. 32: 896-902
Cleynen A, Dudoit S, Robin S. (2014) Comparing Segmentation Methods for Genome Annotation Based on RNA-Seq Data Journal of Agricultural, Biological, and Environmental Statistics. 19: 101-118
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