| Year |
Citation |
Score |
| 2023 |
George N, Fexova S, Fuentes AM, Madrigal P, Bi Y, Iqbal H, Kumbham U, Nolte NF, Zhao L, Thanki AS, Yu ID, Marugan Calles JC, Erdos K, Vilmovsky L, Kurri SR, ... ... Brazma A, et al. Expression Atlas update: insights from sequencing data at both bulk and single cell level. Nucleic Acids Research. PMID 37992296 DOI: 10.1093/nar/gkad1021 |
0.347 |
|
| 2021 |
Moreno P, Fexova S, George N, Manning JR, Miao Z, Mohammed S, Muñoz-Pomer A, Fullgrabe A, Bi Y, Bush N, Iqbal H, Kumbham U, Solovyev A, Zhao L, Prakash A, ... ... Brazma A, et al. Expression Atlas update: gene and protein expression in multiple species. Nucleic Acids Research. PMID 34850121 DOI: 10.1093/nar/gkab1030 |
0.346 |
|
| 2020 |
Sarkans U, Füllgrabe A, Ali A, Athar A, Behrangi E, Diaz N, Fexova S, George N, Iqbal H, Kurri S, Munoz J, Rada J, Papatheodorou I, Brazma A. From ArrayExpress to BioStudies. Nucleic Acids Research. PMID 33211879 DOI: 10.1093/nar/gkaa1062 |
0.361 |
|
| 2020 |
Barzine M, Freivalds K, Wright JC, Opmanis M, Rituma D, Ghavidel FZ, Jarnuczak AJ, Celms E, Cerans K, Jonassen I, Lace L, Vizcaíno JA, Choudhary J, Brazma A, Viksna J. Using Deep Learning to Extrapolate Protein Expression Measurements. Proteomics. e2000009. PMID 32937025 DOI: 10.1002/Pmic.202000009 |
0.338 |
|
| 2020 |
Miao Z, Moreno P, Huang N, Papatheodorou I, Brazma A, Teichmann SA. Putative cell type discovery from single-cell gene expression data. Nature Methods. PMID 32424270 DOI: 10.1038/S41592-020-0825-9 |
0.367 |
|
| 2020 |
Calabrese C, Davidson NR, Demircioğlu D, Fonseca NA, He Y, Kahles A, Lehmann KV, Liu F, Shiraishi Y, Soulette CM, Urban L, Greger L, Li S, Liu D, ... ... Brazma A, et al. Genomic basis for RNA alterations in cancer. Nature. 578: 129-136. PMID 32025019 DOI: 10.1038/S41586-020-1970-0 |
0.425 |
|
| 2020 |
Zhang Y, Chen F, Fonseca NA, He Y, Fujita M, Nakagawa H, Zhang Z, Brazma A, Creighton CJ. High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations. Nature Communications. 11: 736. PMID 32024823 DOI: 10.1038/S41467-019-13885-W |
0.434 |
|
| 2019 |
Papatheodorou I, Moreno P, Manning J, Fuentes AM, George N, Fexova S, Fonseca NA, Füllgrabe A, Green M, Huang N, Huerta L, Iqbal H, Jianu M, Mohammed S, Zhao L, ... ... Brazma A, et al. Expression Atlas update: from tissues to single cells. Nucleic Acids Research. PMID 31665515 DOI: 10.1093/Nar/Gkz947 |
0.438 |
|
| 2019 |
Demircioğlu D, Cukuroglu E, Kindermans M, Nandi T, Calabrese C, Fonseca NA, Kahles A, Lehmann KV, Stegle O, Brazma A, Brooks AN, Rätsch G, Tan P, Göke J. A Pan-cancer Transcriptome Analysis Reveals Pervasive Regulation through Alternative Promoters. Cell. 178: 1465-1477.e17. PMID 31491388 DOI: 10.1016/J.Cell.2019.08.018 |
0.366 |
|
| 2019 |
Ruklisa D, Brazma A, Cerans K, Schlitt T, Viksna J. Dynamics of gene regulatory networks and their dependence on network topology and quantitative parameters - the case of phage λ. Bmc Bioinformatics. 20: 296. PMID 31151381 DOI: 10.1186/S12859-019-2909-Z |
0.316 |
|
| 2018 |
Perez-Riverol Y, Csordas A, Bai J, Bernal-Llinares M, Hewapathirana S, Kundu DJ, Inuganti A, Griss J, Mayer G, Eisenacher M, Pérez E, Uszkoreit J, Pfeuffer J, Sachsenberg T, Yilmaz S, ... ... Brazma A, et al. The PRIDE database and related tools and resources in 2019: improving support for quantification data. Nucleic Acids Research. PMID 30395289 DOI: 10.1093/Nar/Gky1106 |
0.405 |
|
| 2018 |
Ellenberg J, Swedlow JR, Barlow M, Cook CE, Sarkans U, Patwardhan A, Brazma A, Birney E. A call for public archives for biological image data. Nature Methods. 15: 849-854. PMID 30377375 DOI: 10.1038/S41592-018-0195-8 |
0.342 |
|
| 2018 |
Athar A, Füllgrabe A, George N, Iqbal H, Huerta L, Ali A, Snow C, Fonseca NA, Petryszak R, Papatheodorou I, Sarkans U, Brazma A. ArrayExpress update - from bulk to single-cell expression data. Nucleic Acids Research. PMID 30357387 DOI: 10.1093/Nar/Gky964 |
0.47 |
|
| 2018 |
Williams E, Moore J, Li SW, Rustici G, Tarkowska A, Chessel A, Leo S, Antal B, Ferguson RK, Sarkans U, Brazma A, Carazo Salas RE, Swedlow JR. Publisher Correction: Image Data Resource: a bioimage data integration and publication platform. Nature Methods. PMID 30287931 DOI: 10.1038/S41592-018-0169-X |
0.333 |
|
| 2018 |
Collord G, Tarpey P, Kurbatova N, Martincorena I, Moran S, Castro M, Nagy T, Bignell G, Maura F, Young MD, Berna J, Tubio JMC, McMurran CE, Young AMH, Sanders M, ... ... Brazma A, et al. An integrated genomic analysis of anaplastic meningioma identifies prognostic molecular signatures. Scientific Reports. 8: 13537. PMID 30202034 DOI: 10.1038/S41598-018-31659-0 |
0.32 |
|
| 2018 |
Karimzadeh M, Jandaghi P, Papadakis AI, Trainor S, Rung J, Gonzàlez-Porta M, Scelo G, Vasudev NS, Brazma A, Huang S, Banks RE, Lathrop M, Najafabadi HS, Riazalhosseini Y. Aberration hubs in protein interaction networks highlight actionable targets in cancer. Oncotarget. 9: 25166-25180. PMID 29861861 DOI: 10.18632/Oncotarget.25382 |
0.344 |
|
| 2018 |
Perron G, Jandaghi P, Solanki S, Safisamghabadi M, Storoz C, Karimzadeh M, Papadakis AI, Arseneault M, Scelo G, Banks RE, Tost J, Lathrop M, Tanguay S, Brazma A, Huang S, et al. A General Framework for Interrogation of mRNA Stability Programs Identifies RNA-Binding Proteins that Govern Cancer Transcriptomes. Cell Reports. 23: 1639-1650. PMID 29742422 DOI: 10.1016/J.Celrep.2018.04.031 |
0.338 |
|
| 2018 |
Thybert D, Roller M, Navarro FCP, Fiddes I, Streeter I, Feig C, Martin-Galvez D, Kolmogorov M, Janoušek V, Akanni W, Aken B, Aldridge S, Chakrapani V, Chow W, Clarke L, ... ... Brazma A, et al. Repeat associated mechanisms of genome evolution and function revealed by theandgenomes. Genome Research. PMID 29563166 DOI: 10.1101/Gr.234096.117 |
0.333 |
|
| 2018 |
Brazma A. Abstract SY31-03: Reuse of genomics data and lessons for cancer research Cancer Research. 78. DOI: 10.1158/1538-7445.Am2018-Sy31-03 |
0.419 |
|
| 2017 |
Papatheodorou I, Fonseca NA, Keays M, Tang YA, Barrera E, Bazant W, Burke M, Füllgrabe A, Fuentes AM, George N, Huerta L, Koskinen S, Mohammed S, Geniza M, Preece J, ... ... Brazma A, et al. Expression Atlas: gene and protein expression across multiple studies and organisms. Nucleic Acids Research. PMID 29165655 DOI: 10.1093/Nar/Gkx1158 |
0.489 |
|
| 2017 |
Sarkans U, Gostev M, Athar A, Behrangi E, Melnichuk O, Ali A, Minguet J, Rada JC, Snow C, Tikhonov A, Brazma A, McEntyre J. The BioStudies database-one stop shop for all data supporting a life sciences study. Nucleic Acids Research. PMID 29069414 DOI: 10.1093/Nar/Gkx965 |
0.396 |
|
| 2017 |
Torrente A, Brazma A. clustComp, a Bioconductor package for the comparison of clustering results. Bioinformatics (Oxford, England). PMID 28961761 DOI: 10.1093/Bioinformatics/Btx532 |
0.322 |
|
| 2017 |
Roumeliotis TI, Williams SP, Gonçalves E, Alsinet C, Del Castillo Velasco-Herrera M, Aben N, Ghavidel FZ, Michaut M, Schubert M, Price S, Wright JC, Yu L, Yang M, Dienstmann R, Guinney J, ... ... Brazma A, et al. Genomic Determinants of Protein Abundance Variation in Colorectal Cancer Cells. Cell Reports. 20: 2201-2214. PMID 28854368 DOI: 10.1016/J.Celrep.2017.08.010 |
0.32 |
|
| 2017 |
Williams E, Moore J, Li SW, Rustici G, Tarkowska A, Chessel A, Leo S, Antal B, Ferguson RK, Sarkans U, Brazma A, Salas REC, Swedlow JR. The Image Data Resource: A Bioimage Data Integration and Publication Platform. Nature Methods. 14: 775-781. PMID 28775673 DOI: 10.1038/Nmeth.4326 |
0.383 |
|
| 2017 |
Liu Y, Gonzàlez-Porta M, Santos S, Brazma A, Marioni JC, Aebersold R, Venkitaraman AR, Wickramasinghe VO. Impact of Alternative Splicing on the Human Proteome. Cell Reports. 20: 1229-1241. PMID 28768205 DOI: 10.1016/J.Celrep.2017.07.025 |
0.411 |
|
| 2017 |
Petryszak R, Fonseca NA, Füllgrabe A, Huerta L, Keays M, Amy Tang Y, Brazma A. The RNASeq-er API - a gateway to systematically updated analysis of public RNA-Seq data. Bioinformatics (Oxford, England). PMID 28369191 DOI: 10.1093/Bioinformatics/Btx143 |
0.377 |
|
| 2017 |
Brandizi M, Melnichuk O, Bild R, Kohlmayer F, Rodriguez-Castro B, Spengler H, Kuhn KA, Kuchinke W, Ohmann C, Mustonen T, Linden M, Nyrönen T, Lappalainen I, Brazma A, Sarkans U. Orchestrating differential data access for translational research: a pilot implementation. Bmc Medical Informatics and Decision Making. 17: 30. PMID 28330491 DOI: 10.1186/S12911-017-0424-6 |
0.366 |
|
| 2017 |
Huerta L, Barrera E, Bazant W, Fonseca NA, Fullgrabe A, Keays M, Mohammed S, Munoz-Pomer A, Tang A, Papatheodorou I, Petryszak R, Sarkans U, Brazma A. Expression Atlas: exploring gene expression results across species under different biological conditions F1000research. 6. DOI: 10.7490/F1000Research.1114619.1 |
0.385 |
|
| 2017 |
Davidson NR, Brazma A, Brooks AN, Calabrese C, Fonseca NA, Goke J, He Y, Hu X, Kahles A, Lehmann K, Liu F, Rätsch G, Li S, Schwarz RF, Yang M, et al. Abstract 389: Integrating diverse transcriptomic alterations to identify cancer-relevant genes Cancer Research. 77: 389-389. DOI: 10.1158/1538-7445.Am2017-389 |
0.452 |
|
| 2016 |
Torrente A, Lukk M, Xue V, Parkinson H, Rung J, Brazma A. Identification of Cancer Related Genes Using a Comprehensive Map of Human Gene Expression. Plos One. 11: e0157484. PMID 27322383 DOI: 10.1371/Journal.Pone.0157484 |
0.5 |
|
| 2016 |
Wright JC, Mudge J, Weisser H, Barzine MP, Gonzalez JM, Brazma A, Choudhary JS, Harrow J. Improving GENCODE reference gene annotation using a high-stringency proteogenomics workflow. Nature Communications. 7: 11778. PMID 27250503 DOI: 10.1038/Ncomms11778 |
0.459 |
|
| 2016 |
Blomstedt P, Dutta R, Seth S, Brazma A, Kaski S. Modelling-based experiment retrieval: A case study with gene expression clustering. Bioinformatics (Oxford, England). PMID 26740526 DOI: 10.1093/Bioinformatics/Btv762 |
0.426 |
|
| 2016 |
Fuentes AM, Bażant W, Barrera E, Burke M, Eliasova J, Fonseca N, Huerta L, Fullgrabe A, Keays M, Koskinen S, Papatheodorou I, Tang A, Petryszak R, Brazma A. Expression Atlas: functional genomics resource at EMBL-EBI F1000research. 5. DOI: 10.7490/F1000Research.1112952.1 |
0.36 |
|
| 2015 |
McEntyre J, Sarkans U, Brazma A. The BioStudies database. Molecular Systems Biology. 11: 847. PMID 26700850 DOI: 10.15252/Msb.20156658 |
0.377 |
|
| 2015 |
Petryszak R, Keays M, Tang YA, Fonseca NA, Barrera E, Burdett T, Füllgrabe A, Fuentes AM, Jupp S, Koskinen S, Mannion O, Huerta L, Megy K, Snow C, Williams E, ... ... Brazma A, et al. Expression Atlas update-an integrated database of gene and protein expression in humans, animals and plants. Nucleic Acids Research. PMID 26481351 DOI: 10.1093/Nar/Gkv1045 |
0.451 |
|
| 2015 |
Su J, Ekman C, Oskolkov N, Lahti L, Ström K, Brazma A, Groop L, Rung J, Hansson O. A novel atlas of gene expression in human skeletal muscle reveals molecular changes associated with aging. Skeletal Muscle. 5: 35. PMID 26457177 DOI: 10.1186/S13395-015-0059-1 |
0.356 |
|
| 2015 |
Leigh-Brown S, Goncalves A, Thybert D, Stefflova K, Watt S, Flicek P, Brazma A, Marioni JC, Odom DT. Regulatory Divergence of Transcript Isoforms in a Mammalian Model System. Plos One. 10: e0137367. PMID 26339903 DOI: 10.1371/Journal.Pone.0137367 |
0.622 |
|
| 2015 |
Frankish A, Uszczynska B, Ritchie GR, Gonzalez JM, Pervouchine D, Petryszak R, Mudge JM, Fonseca N, Brazma A, Guigo R, Harrow J. Comparison of GENCODE and RefSeq gene annotation and the impact of reference geneset on variant effect prediction. Bmc Genomics. 16: S2. PMID 26110515 DOI: 10.1186/1471-2164-16-S8-S2 |
0.456 |
|
| 2015 |
Kirsanova C, Brazma A, Rustici G, Sarkans U. Cellular phenotype database: a repository for systems microscopy data. Bioinformatics (Oxford, England). PMID 25861964 DOI: 10.1093/Bioinformatics/Btv199 |
0.368 |
|
| 2015 |
Kolesnikov N, Hastings E, Keays M, Melnichuk O, Tang YA, Williams E, Dylag M, Kurbatova N, Brandizi M, Burdett T, Megy K, Pilicheva E, Rustici G, Tikhonov A, Parkinson H, ... ... Brazma A, et al. ArrayExpress update--simplifying data submissions. Nucleic Acids Research. 43: D1113-6. PMID 25361974 DOI: 10.1093/Nar/Gku1057 |
0.428 |
|
| 2014 |
Scelo G, Riazalhosseini Y, Greger L, Letourneau L, Gonzàlez-Porta M, Wozniak MB, Bourgey M, Harnden P, Egevad L, Jackson SM, Karimzadeh M, Arseneault M, Lepage P, How-Kit A, Daunay A, ... ... Brazma A, et al. Variation in genomic landscape of clear cell renal cell carcinoma across Europe. Nature Communications. 5: 5135. PMID 25351205 DOI: 10.1038/Ncomms6135 |
0.336 |
|
| 2014 |
Fonseca NA, Marioni J, Brazma A. RNA-Seq gene profiling--a systematic empirical comparison. Plos One. 9: e107026. PMID 25268973 DOI: 10.1371/Journal.Pone.0107026 |
0.489 |
|
| 2014 |
Greger L, Su J, Rung J, Ferreira PG, Lappalainen T, Dermitzakis ET, Brazma A. Tandem RNA chimeras contribute to transcriptome diversity in human population and are associated with intronic genetic variants. Plos One. 9: e104567. PMID 25133550 DOI: 10.1371/Journal.Pone.0104567 |
0.359 |
|
| 2014 |
Marguerat S, Lawler K, Brazma A, Bähler J. Contributions of transcription and mRNA decay to gene expression dynamics of fission yeast in response to oxidative stress. Rna Biology. 11: 702-14. PMID 25007214 DOI: 10.4161/Rna.29196 |
0.374 |
|
| 2014 |
Petryszak R, Burdett T, Fiorelli B, Fonseca NA, Gonzalez-Porta M, Hastings E, Huber W, Jupp S, Keays M, Kryvych N, McMurry J, Marioni JC, Malone J, Megy K, Rustici G, ... ... Brazma A, et al. Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments. Nucleic Acids Research. 42: D926-32. PMID 24304889 DOI: 10.1093/Nar/Gkt1270 |
0.508 |
|
| 2014 |
Faulconbridge A, Burdett T, Brandizi M, Gostev M, Pereira R, Vasant D, Sarkans U, Brazma A, Parkinson H. Updates to BioSamples database at European Bioinformatics Institute. Nucleic Acids Research. 42: D50-2. PMID 24265224 DOI: 10.1093/Nar/Gkt1081 |
0.367 |
|
| 2014 |
Viksna J, Brazma A, Cerans K, Ruklisa D, Schlitt T. Hybrid systems for modeling and analysis of qualitative behaviour of gene regulatory networks F1000research. 5. DOI: 10.7490/F1000Research.1097020.1 |
0.34 |
|
| 2014 |
Kirsanova C, Sarkans U, Rustici G, Jupp S, Brazma A. Cellular phenotype database with ontology assisted data browsing F1000research. 5. DOI: 10.7490/F1000Research.1096808.1 |
0.387 |
|
| 2013 |
Lappalainen T, Sammeth M, Friedländer MR, 't Hoen PA, Monlong J, Rivas MA, Gonzà lez-Porta M, Kurbatova N, Griebel T, Ferreira PG, Barann M, Wieland T, Greger L, van Iterson M, Almlöf J, ... ... Brazma A, et al. Transcriptome and genome sequencing uncovers functional variation in humans. Nature. 501: 506-11. PMID 24037378 DOI: 10.1038/Nature12531 |
0.362 |
|
| 2013 |
Stefflova K, Thybert D, Wilson MD, Streeter I, Aleksic J, Karagianni P, Brazma A, Adams DJ, Talianidis I, Marioni JC, Flicek P, Odom DT. Cooperativity and rapid evolution of cobound transcription factors in closely related mammals. Cell. 154: 530-40. PMID 23911320 DOI: 10.1016/J.Cell.2013.07.007 |
0.306 |
|
| 2013 |
Gonzàlez-Porta M, Frankish A, Rung J, Harrow J, Brazma A. Transcriptome analysis of human tissues and cell lines reveals one dominant transcript per gene. Genome Biology. 14: R70. PMID 23815980 DOI: 10.1186/Gb-2013-14-7-R70 |
0.4 |
|
| 2013 |
Lawler K, Hammond-Kosack K, Brazma A, Coulson RM. Genomic clustering and co-regulation of transcriptional networks in the pathogenic fungus Fusarium graminearum. Bmc Systems Biology. 7: 52. PMID 23805903 DOI: 10.1186/1752-0509-7-52 |
0.434 |
|
| 2013 |
Majewski IJ, Mittempergher L, Davidson NM, Bosma A, Willems SM, Horlings HM, de Rink I, Greger L, Hooijer GK, Peters D, Nederlof PM, Hofland I, de Jong J, Wesseling J, Kluin RJ, ... ... Brazma A, et al. Identification of recurrent FGFR3 fusion genes in lung cancer through kinome-centred RNA sequencing. The Journal of Pathology. 230: 270-6. PMID 23661334 DOI: 10.1002/Path.4209 |
0.332 |
|
| 2013 |
Lahti L, Torrente A, Elo LL, Brazma A, Rung J. A fully scalable online pre-processing algorithm for short oligonucleotide microarray atlases. Nucleic Acids Research. 41: e110. PMID 23563154 DOI: 10.1093/Nar/Gkt229 |
0.382 |
|
| 2013 |
Rung J, Brazma A. Reuse of public genome-wide gene expression data. Nature Reviews. Genetics. 14: 89-99. PMID 23269463 DOI: 10.1038/Nrg3394 |
0.516 |
|
| 2013 |
Brazma A, Cerans K, Ruklisa D, Schlitt T, Viksna J. HSM - a hybrid system based approach for modelling intracellular networks. Gene. 518: 70-7. PMID 23266641 DOI: 10.1016/J.Gene.2012.11.084 |
0.304 |
|
| 2013 |
Rustici G, Kolesnikov N, Brandizi M, Burdett T, Dylag M, Emam I, Farne A, Hastings E, Ison J, Keays M, Kurbatova N, Malone J, Mani R, Mupo A, Pedro Pereira R, ... ... Brazma A, et al. ArrayExpress update--trends in database growth and links to data analysis tools. Nucleic Acids Research. 41: D987-90. PMID 23193272 DOI: 10.1093/Nar/Gks1174 |
0.459 |
|
| 2012 |
Fonseca NA, Rung J, Brazma A, Marioni JC. Tools for mapping high-throughput sequencing data. Bioinformatics (Oxford, England). 28: 3169-77. PMID 23060614 DOI: 10.1093/Bioinformatics/Bts605 |
0.321 |
|
| 2012 |
Goncalves A, Leigh-Brown S, Thybert D, Stefflova K, Turro E, Flicek P, Brazma A, Odom DT, Marioni JC. Extensive compensatory cis-trans regulation in the evolution of mouse gene expression. Genome Research. 22: 2376-84. PMID 22919075 DOI: 10.1101/Gr.142281.112 |
0.608 |
|
| 2012 |
Xue V, Burdett T, Lukk M, Taylor J, Brazma A, Parkinson H. MageComet--web application for harmonizing existing large-scale experiment descriptions. Bioinformatics (Oxford, England). 28: 1402-3. PMID 22474121 DOI: 10.1093/Bioinformatics/Bts148 |
0.486 |
|
| 2012 |
Caldas J, Gehlenborg N, Kettunen E, Faisal A, Rönty M, Nicholson AG, Knuutila S, Brazma A, Kaski S. Data-driven information retrieval in heterogeneous collections of transcriptomics data links SIM2s to malignant pleural mesothelioma. Bioinformatics (Oxford, England). 28: 246-53. PMID 22106335 DOI: 10.1093/Bioinformatics/Btr634 |
0.448 |
|
| 2012 |
Gostev M, Faulconbridge A, Brandizi M, Fernandez-Banet J, Sarkans U, Brazma A, Parkinson H. The BioSample Database (BioSD) at the European Bioinformatics Institute. Nucleic Acids Research. 40: D64-70. PMID 22096232 DOI: 10.1093/Nar/Gkr937 |
0.367 |
|
| 2012 |
Kapushesky M, Adamusiak T, Burdett T, Culhane A, Farne A, Filippov A, Holloway E, Klebanov A, Kryvych N, Kurbatova N, Kurnosov P, Malone J, Melnichuk O, Petryszak R, Pultsin N, ... ... Brazma A, et al. Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments. Nucleic Acids Research. 40: D1077-81. PMID 22064864 DOI: 10.1093/Nar/Gkr913 |
0.486 |
|
| 2011 |
Kutter C, Brown GD, Gonçalves A, Wilson MD, Watt S, Brazma A, White RJ, Odom DT. Pol III binding in six mammals shows conservation among amino acid isotypes despite divergence among tRNA genes. Nature Genetics. 43: 948-55. PMID 21873999 DOI: 10.1038/Ng.906 |
0.57 |
|
| 2011 |
Goncalves A, Tikhonov A, Brazma A, Kapushesky M. A pipeline for RNA-seq data processing and quality assessment. Bioinformatics (Oxford, England). 27: 867-9. PMID 21233166 DOI: 10.1093/Bioinformatics/Btr012 |
0.589 |
|
| 2011 |
Beisvåg V, Kauffmann A, Malone J, Foy C, Salit M, Schimmel H, Bongcam-Rudloff E, Landegren U, Parkinson H, Huber W, Brazma A, Sandvik AK, Kuiper M. Contributions of the EMERALD project to assessing and improving microarray data quality. Biotechniques. 50: 27-31. PMID 21231919 DOI: 10.2144/000113591 |
0.435 |
|
| 2011 |
Gostev M, Fernandez-Banet J, Rung J, Dietrich J, Prokopenko I, Ripatti S, McCarthy MI, Brazma A, Krestyaninova M. SAIL--a software system for sample and phenotype availability across biobanks and cohorts. Bioinformatics (Oxford, England). 27: 589-91. PMID 21169373 DOI: 10.1093/Bioinformatics/Btq693 |
0.381 |
|
| 2011 |
Parkinson H, Sarkans U, Kolesnikov N, Abeygunawardena N, Burdett T, Dylag M, Emam I, Farne A, Hastings E, Holloway E, Kurbatova N, Lukk M, Malone J, Mani R, Pilicheva E, ... ... Brazma A, et al. ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments. Nucleic Acids Research. 39: D1002-4. PMID 21071405 DOI: 10.1093/Nar/Gkq1040 |
0.48 |
|
| 2010 |
Zheng-Bradley X, Rung J, Parkinson H, Brazma A. Large scale comparison of global gene expression patterns in human and mouse. Genome Biology. 11: R124. PMID 21182765 DOI: 10.1186/Gb-2010-11-12-R124 |
0.441 |
|
| 2010 |
Shankar R, Parkinson H, Burdett T, Hastings E, Liu J, Miller M, Srinivasa R, White J, Brazma A, Sherlock G, Stoeckert CJ, Ball CA. Annotare--a tool for annotating high-throughput biomedical investigations and resulting data. Bioinformatics (Oxford, England). 26: 2470-1. PMID 20733062 DOI: 10.1093/Bioinformatics/Btq462 |
0.385 |
|
| 2010 |
McKinney EF, Lyons PA, Carr EJ, Hollis JL, Jayne DR, Willcocks LC, Koukoulaki M, Brazma A, Jovanovic V, Kemeny DM, Pollard AJ, Macary PA, Chaudhry AN, Smith KG. A CD8+ T cell transcription signature predicts prognosis in autoimmune disease. Nature Medicine. 16: 586-91, 1p following. PMID 20400961 DOI: 10.1038/Nm.2130 |
0.314 |
|
| 2010 |
Hudson TJ, Anderson W, Artez A, Barker AD, Bell C, Bernabé RR, Bhan MK, Calvo F, Eerola I, Gerhard DS, Guttmacher A, Guyer M, Hemsley FM, Jennings JL, ... ... Brazma A, et al. International network of cancer genome projects. Nature. 464: 993-8. PMID 20393554 DOI: 10.1038/Nature08987 |
0.304 |
|
| 2010 |
Lukk M, Kapushesky M, Nikkilä J, Parkinson H, Goncalves A, Huber W, Ukkonen E, Brazma A. A global map of human gene expression. Nature Biotechnology. 28: 322-4. PMID 20379172 DOI: 10.1038/Nbt0410-322 |
0.615 |
|
| 2010 |
Malone J, Holloway E, Adamusiak T, Kapushesky M, Zheng J, Kolesnikov N, Zhukova A, Brazma A, Parkinson H. Modeling sample variables with an Experimental Factor Ontology. Bioinformatics (Oxford, England). 26: 1112-8. PMID 20200009 DOI: 10.1093/Bioinformatics/Btq099 |
0.386 |
|
| 2010 |
Vainshtein Y, Sanchez M, Brazma A, Hentze MW, Dandekar T, Muckenthaler MU. The IronChip evaluation package: a package of perl modules for robust analysis of custom microarrays. Bmc Bioinformatics. 11: 112. PMID 20193060 DOI: 10.1186/1471-2105-11-112 |
0.399 |
|
| 2010 |
Kapushesky M, Emam I, Holloway E, Kurnosov P, Zorin A, Malone J, Rustici G, Williams E, Parkinson H, Brazma A. Gene expression atlas at the European bioinformatics institute. Nucleic Acids Research. 38: D690-8. PMID 19906730 DOI: 10.1093/Nar/Gkp936 |
0.483 |
|
| 2010 |
Kapushesky M, Tikhonov A, Aulchenko YS, Gonçalves A, Rung J, Santamaria R, Brazma A. EBI R CLOUD – Cloud computing for functional genomics at the EBI F1000research. 1. DOI: 10.7490/F1000Research.328.1 |
0.522 |
|
| 2010 |
Peltonen J, Aidos H, Gehlenborg N, Brazma A, Kaski S. An information retrieval perspective on visualization of gene expression data with ontological annotation Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 2178-2181. DOI: 10.1109/ICASSP.2010.5495665 |
0.32 |
|
| 2009 |
Aligianni S, Lackner DH, Klier S, Rustici G, Wilhelm BT, Marguerat S, Codlin S, Brazma A, de Bruin RA, Bähler J. The fission yeast homeodomain protein Yox1p binds to MBF and confines MBF-dependent cell-cycle transcription to G1-S via negative feedback. Plos Genetics. 5: e1000626. PMID 19714215 DOI: 10.1371/Journal.Pgen.1000626 |
0.349 |
|
| 2009 |
Krestyaninova M, Zarins A, Viksna J, Kurbatova N, Rucevskis P, Neogi SG, Gostev M, Perheentupa T, Knuuttila J, Barrett A, Lappalainen I, Rung J, Podnieks K, Sarkans U, McCarthy MI, ... Brazma A, et al. A System for Information Management in BioMedical Studies--SIMBioMS. Bioinformatics (Oxford, England). 25: 2768-9. PMID 19633095 DOI: 10.1093/Bioinformatics/Btp420 |
0.417 |
|
| 2009 |
Kauffmann A, Rayner TF, Parkinson H, Kapushesky M, Lukk M, Brazma A, Huber W. Importing ArrayExpress datasets into R/Bioconductor. Bioinformatics (Oxford, England). 25: 2092-4. PMID 19505942 DOI: 10.1093/Bioinformatics/Btp354 |
0.317 |
|
| 2009 |
Brazma A. Minimum Information About a Microarray Experiment (MIAME)--successes, failures, challenges. Thescientificworldjournal. 9: 420-3. PMID 19484163 DOI: 10.1100/Tsw.2009.57 |
0.348 |
|
| 2009 |
Caldas J, Gehlenborg N, Faisal A, Brazma A, Kaski S. Probabilistic retrieval and visualization of biologically relevant microarray experiments. Bioinformatics (Oxford, England). 25: i145-53. PMID 19477980 DOI: 10.1186/1471-2105-10-S13-P1 |
0.342 |
|
| 2009 |
Aebersold R, Auffray C, Baney E, Barillot E, Brazma A, Brett C, Brunak S, Butte A, Califano A, Celis J, Cufer T, Ferrell J, Galas D, Gallahan D, Gatenby R, et al. Report on EU-USA workshop: how systems biology can advance cancer research (27 October 2008). Molecular Oncology. 3: 9-17. PMID 19383362 DOI: 10.1016/J.Molonc.2008.11.003 |
0.325 |
|
| 2009 |
Vingron M, Brazma A, Coulson R, van Helden J, Manke T, Palin K, Sand O, Ukkonen E. Integrating sequence, evolution and functional genomics in regulatory genomics. Genome Biology. 10: 202. PMID 19226437 DOI: 10.1186/Gb-2009-10-1-202 |
0.377 |
|
| 2009 |
Parkinson H, Kapushesky M, Kolesnikov N, Rustici G, Shojatalab M, Abeygunawardena N, Berube H, Dylag M, Emam I, Farne A, Holloway E, Lukk M, Malone J, Mani R, Pilicheva E, ... ... Brazma A, et al. ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression. Nucleic Acids Research. 37: D868-72. PMID 19015125 DOI: 10.1093/Nar/Gkn889 |
0.531 |
|
| 2009 |
Gehlenborg N, Brazma A. Visualization of large microarray experiments with space maps Bmc Bioinformatics. 10: O7. DOI: 10.1186/1471-2105-10-S13-O7 |
0.348 |
|
| 2008 |
Rustici G, Kapushesky M, Kolesnikov N, Parkinson H, Sarkans U, Brazma A. Data storage and analysis in ArrayExpress and Expression Profiler. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 7.13. PMID 18819076 DOI: 10.1002/0471250953.Bi0713S23 |
0.504 |
|
| 2008 |
Sansone SA, Rocca-Serra P, Brandizi M, Brazma A, Field D, Fostel J, Garrow AG, Gilbert J, Goodsaid F, Hardy N, Jones P, Lister A, Miller M, Morrison N, Rayner T, et al. The first RSBI (ISA-TAB) workshop: "can a simple format work for complex studies?". Omics : a Journal of Integrative Biology. 12: 143-9. PMID 18447634 DOI: 10.1089/Omi.2008.0019 |
0.415 |
|
| 2008 |
Deutsch EW, Ball CA, Berman JJ, Bova GS, Brazma A, Bumgarner RE, Campbell D, Causton HC, Christiansen JH, Daian F, Dauga D, Davidson DR, Gimenez G, Goo YA, Grimmond S, et al. Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE). Nature Biotechnology. 26: 305-12. PMID 18327244 DOI: 10.1038/Nbt1391 |
0.351 |
|
| 2008 |
Haudry Y, Berube H, Letunic I, Weeber PD, Gagneur J, Girardot C, Kapushesky M, Arendt D, Bork P, Brazma A, Furlong EE, Wittbrodt J, Henrich T. 4DXpress: a database for cross-species expression pattern comparisons. Nucleic Acids Research. 36: D847-53. PMID 17916571 DOI: 10.1093/Nar/Gkm797 |
0.448 |
|
| 2008 |
Coulson R, Manke T, Palin K, Roider H, Sand O, Van Helden J, Ukkonen E, Vingron M, Brazma A. From gene expression profiling to gene regulation Modern Genome Annotation: the Biosapiens Network. 105-119. DOI: 10.1007/978-3-211-75123-7_6 |
0.312 |
|
| 2007 |
Jones AR, Miller M, Aebersold R, Apweiler R, Ball CA, Brazma A, Degreef J, Hardy N, Hermjakob H, Hubbard SJ, Hussey P, Igra M, Jenkins H, Julian RK, Laursen K, et al. The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics. Nature Biotechnology. 25: 1127-33. PMID 17921998 DOI: 10.1038/Nbt1347 |
0.443 |
|
| 2007 |
Schlitt T, Brazma A. Current approaches to gene regulatory network modelling. Bmc Bioinformatics. 8: S9. PMID 17903290 DOI: 10.1186/1471-2105-8-S6-S9 |
0.307 |
|
| 2007 |
Samsonova AA, Niranjan M, Russell S, Brazma A. Prediction of gene expression in embryonic structures of Drosophila melanogaster. Plos Computational Biology. 3: e144. PMID 17658945 DOI: 10.1371/Journal.Pcbi.0030144 |
0.493 |
|
| 2007 |
Rustici G, van Bakel H, Lackner DH, Holstege FC, Wijmenga C, Bähler J, Brazma A. Global transcriptional responses of fission and budding yeast to changes in copper and iron levels: a comparative study. Genome Biology. 8: R73. PMID 17477863 DOI: 10.1186/Gb-2007-8-5-R73 |
0.346 |
|
| 2007 |
Viksna J, Celms E, Opmanis M, Podnieks K, Rucevskis P, Zarins A, Barrett A, Neogi SG, Krestyaninova M, McCarthy MI, Brazma A, Sarkans U. PASSIM--an open source software system for managing information in biomedical studies. Bmc Bioinformatics. 8: 52. PMID 17291344 DOI: 10.1186/1471-2105-8-52 |
0.303 |
|
| 2007 |
Parkinson H, Kapushesky M, Shojatalab M, Abeygunawardena N, Coulson R, Farne A, Holloway E, Kolesnykov N, Lilja P, Lukk M, Mani R, Rayner T, Sharma A, William E, Sarkans U, ... Brazma A, et al. ArrayExpress--a public database of microarray experiments and gene expression profiles. Nucleic Acids Research. 35: D747-50. PMID 17132828 DOI: 10.1093/Nar/Gkl995 |
0.52 |
|
| 2006 |
Rayner TF, Rocca-Serra P, Spellman PT, Causton HC, Farne A, Holloway E, Irizarry RA, Liu J, Maier DS, Miller M, Petersen K, Quackenbush J, Sherlock G, Stoeckert CJ, White J, ... ... Brazma A, et al. A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB. Bmc Bioinformatics. 7: 489. PMID 17087822 DOI: 10.1186/1471-2105-7-489 |
0.373 |
|
| 2006 |
Brazma A, Kapushesky M, Parkinson H, Sarkans U, Shojatalab M. Data storage and analysis in ArrayExpress. Methods in Enzymology. 411: 370-86. PMID 16939801 DOI: 10.1016/S0076-6879(06)11020-4 |
0.482 |
|
| 2006 |
Deutsch EW, Ball CA, Bova GS, Brazma A, Bumgarner RE, Campbell D, Causton HC, Christiansen J, Davidson D, Eichner LJ, Goo YA, Grimmond S, Henrich T, Johnson MH, Korb M, et al. Development of the Minimum Information Specification for In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE). Omics : a Journal of Integrative Biology. 10: 205-8. PMID 16901227 DOI: 10.1089/Omi.2006.10.205 |
0.367 |
|
| 2006 |
Ball CA, Brazma A. MGED standards: work in progress. Omics : a Journal of Integrative Biology. 10: 138-44. PMID 16901218 DOI: 10.1089/Omi.2006.10.138 |
0.49 |
|
| 2006 |
Brazma A, Krestyaninova M, Sarkans U. Standards for systems biology. Nature Reviews. Genetics. 7: 593-605. PMID 16847461 DOI: 10.1038/Nrg1922 |
0.34 |
|
| 2006 |
Schlitt T, Brazma A. Modelling in molecular biology: describing transcription regulatory networks at different scales. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 361: 483-94. PMID 16524837 DOI: 10.1098/Rstb.2005.1806 |
0.303 |
|
| 2006 |
Blake J, Schwager C, Kapushesky M, Brazma A. ChroCoLoc: an application for calculating the probability of co-localization of microarray gene expression. Bioinformatics (Oxford, England). 22: 765-7. PMID 16377611 DOI: 10.1093/Bioinformatics/Btk022 |
0.413 |
|
| 2005 |
Mukherjee G, Abeygunawardena N, Parkinson H, Contrino S, Durinck S, Farne A, Holloway E, Lilja P, Moreau Y, Oezcimen A, Rayner T, Sharma A, Brazma A, Sarkans U, Shojatalab M. Plant-based microarray data at the European Bioinformatics Institute. Introducing AtMIAMExpress, a submission tool for Arabidopsis gene expression data to ArrayExpress. Plant Physiology. 139: 632-6. PMID 16219923 DOI: 10.1104/Pp.105.063156 |
0.46 |
|
| 2005 |
Gilks WR, Tom BD, Brazma A. Fusing microarray experiments with multivariate regression. Bioinformatics (Oxford, England). 21: ii137-43. PMID 16204093 DOI: 10.1093/Bioinformatics/Bti1123 |
0.402 |
|
| 2005 |
Torrente A, Kapushesky M, Brazma A. A new algorithm for comparing and visualizing relationships between hierarchical and flat gene expression data clusterings. Bioinformatics (Oxford, England). 21: 3993-9. PMID 16141251 DOI: 10.1093/Bioinformatics/Bti644 |
0.314 |
|
| 2005 |
Durinck S, Moreau Y, Kasprzyk A, Davis S, De Moor B, Brazma A, Huber W. BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis. Bioinformatics (Oxford, England). 21: 3439-40. PMID 16082012 DOI: 10.1093/Bioinformatics/Bti525 |
0.489 |
|
| 2005 |
Parkinson H, Sarkans U, Shojatalab M, Abeygunawardena N, Contrino S, Coulson R, Farne A, Lara GG, Holloway E, Kapushesky M, Lilja P, Mukherjee G, Oezcimen A, Rayner T, Rocca-Serra P, ... ... Brazma A, et al. ArrayExpress--a public repository for microarray gene expression data at the EBI. Nucleic Acids Research. 33: D553-5. PMID 15608260 DOI: 10.1093/Nar/Gki056 |
0.473 |
|
| 2005 |
Sarkans U, Parkinson H, Lara GG, Oezcimen A, Sharma A, Abeygunawardena N, Contrino S, Holloway E, Rocca-Serra P, Mukherjee G, Shojatalab M, Kapushesky M, Sansone SA, Farne A, Rayner T, ... Brazma A, et al. The ArrayExpress gene expression database: a software engineering and implementation perspective. Bioinformatics (Oxford, England). 21: 1495-501. PMID 15564302 DOI: 10.1093/Bioinformatics/Bti157 |
0.406 |
|
| 2004 |
Ball C, Brazma A, Causton H, Chervitz S, Edgar R, Hingamp P, Matese JC, Parkinson H, Quackenbush J, Ringwald M, Sansone SA, Sherlock G, Spellman P, Stoeckert C, Tateno Y, et al. Standards for microarray data: an open letter. Environmental Health Perspectives. 112: A666-7. PMID 15345376 DOI: 10.1289/Ehp.112-1277123 |
0.451 |
|
| 2004 |
Ball CA, Brazma A, Causton H, Chervitz S, Edgar R, Hingamp P, Matese JC, Parkinson H, Quackenbush J, Ringwald M, Sansone SA, Sherlock G, Spellman P, Stoeckert C, Tateno Y, et al. Submission of microarray data to public repositories. Plos Biology. 2: E317. PMID 15340489 DOI: 10.1371/Journal.Pbio.0020317 |
0.425 |
|
| 2004 |
Ball CA, Sherlock G, Brazma A. Funding high-throughput data sharing. Nature Biotechnology. 22: 1179-83. PMID 15340487 DOI: 10.1038/Nbt0904-1179 |
0.345 |
|
| 2004 |
Brazma A, Freeman T, Gardiner K, Weissman S, Werner T, Korn B. Report on the thirteenth international workshop on the identification and functional, evolutionary and expression analysis of transcribed sequences: comparative and functional genomics workshop. Cytogenetic and Genome Research. 105: 11-7. PMID 15218252 DOI: 10.1159/000078003 |
0.364 |
|
| 2004 |
Kapushesky M, Kemmeren P, Culhane AC, Durinck S, Ihmels J, Körner C, Kull M, Torrente A, Sarkans U, Vilo J, Brazma A. Expression Profiler: next generation--an online platform for analysis of microarray data. Nucleic Acids Research. 32: W465-70. PMID 15215431 DOI: 10.1093/Nar/Gkh470 |
0.487 |
|
| 2004 |
Rustici G, Mata J, Kivinen K, Lió P, Penkett CJ, Burns G, Hayles J, Brazma A, Nurse P, Bähler J. Periodic gene expression program of the fission yeast cell cycle. Nature Genetics. 36: 809-17. PMID 15195092 DOI: 10.1038/Ng1377 |
0.373 |
|
| 2004 |
Hermjakob H, Montecchi-Palazzi L, Bader G, Wojcik J, Salwinski L, Ceol A, Moore S, Orchard S, Sarkans U, von Mering C, Roechert B, Poux S, Jung E, Mersch H, Kersey P, ... ... Brazma A, et al. The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data. Nature Biotechnology. 22: 177-83. PMID 14755292 DOI: 10.1038/Nbt926 |
0.336 |
|
| 2004 |
Stoeckert CJ, Quackenbush J, Brazma A, Ball CA. Minimum information about a functional genomics experiment: The state of microarray standards and their extension to other technologies Drug Discovery Today: Targets. 3: 159-164. DOI: 10.1016/S1741-8372(04)02435-1 |
0.425 |
|
| 2003 |
Rocca-Serra P, Brazma A, Parkinson H, Sarkans U, Shojatalab M, Contrino S, Vilo J, Abeygunawardena N, Mukherjee G, Holloway E, Kapushesky M, Kemmeren P, Lara GG, Oezcimen A, Sansone SA. ArrayExpress: a public database of gene expression data at EBI. Comptes Rendus Biologies. 326: 1075-8. PMID 14744115 DOI: 10.1016/J.Crvi.2003.09.026 |
0.492 |
|
| 2003 |
Schlitt T, Palin K, Rung J, Dietmann S, Lappe M, Ukkonen E, Brazma A. From gene networks to gene function. Genome Research. 13: 2568-76. PMID 14656964 DOI: 10.1101/Gr.1111403 |
0.439 |
|
| 2003 |
Soinov LA, Krestyaninova MA, Brazma A. Towards reconstruction of gene networks from expression data by supervised learning. Genome Biology. 4: R6. PMID 12540298 DOI: 10.1186/Gb-2003-4-1-R6 |
0.442 |
|
| 2003 |
Brazma A, Parkinson H, Sarkans U, Shojatalab M, Vilo J, Abeygunawardena N, Holloway E, Kapushesky M, Kemmeren P, Lara GG, Oezcimen A, Rocca-Serra P, Sansone SA. ArrayExpress--a public repository for microarray gene expression data at the EBI. Nucleic Acids Research. 31: 68-71. PMID 12519949 DOI: 10.1093/nar/gkg091 |
0.413 |
|
| 2003 |
Brazma A, Schlitt T. Genome Biology. 4: P5. DOI: 10.1186/Gb-2003-4-6-P5 |
0.366 |
|
| 2002 |
Schlitt T, Brazma A. Learning about gene regulatory networks from gene deletion experiments. Comparative and Functional Genomics. 3: 499-503. PMID 18629255 DOI: 10.1002/Cfg.220 |
0.391 |
|
| 2002 |
Ball CA, Sherlock G, Parkinson H, Rocca-Sera P, Brooksbank C, Causton HC, Cavalieri D, Gaasterland T, Hingamp P, Holstege F, Ringwald M, Spellman P, Stoeckert CJ, Stewart JE, Taylor R, ... Brazma A, et al. Standards for microarray data. Science (New York, N.Y.). 298: 539. PMID 12387284 DOI: 10.1126/Science.298.5593.539B |
0.424 |
|
| 2002 |
Palin K, Ukkonen E, Brazma A, Vilo J. Correlating gene promoters and expression in gene disruption experiments. Bioinformatics (Oxford, England). 18: S172-80. PMID 12386000 |
0.328 |
|
| 2002 |
Brazma A, Sarkans U, Robinson A, Vilo J, Vingron M, Hoheisel J, Fellenberg K. Microarray data representation, annotation and storage. Advances in Biochemical Engineering/Biotechnology. 77: 113-39. PMID 12227734 DOI: 10.1007/3-540-45713-5_7 |
0.461 |
|
| 2002 |
Spellman PT, Miller M, Stewart J, Troup C, Sarkans U, Chervitz S, Bernhart D, Sherlock G, Ball C, Lepage M, Swiatek M, Marks WL, Goncalves J, Markel S, Iordan D, ... ... Brazma A, et al. Design and implementation of microarray gene expression markup language (MAGE-ML). Genome Biology. 3: RESEARCH0046. PMID 12225585 DOI: 10.1186/Gb-2002-3-9-Research0046 |
0.467 |
|
| 2002 |
Kemmeren P, van Berkum NL, Vilo J, Bijma T, Donders R, Brazma A, Holstege FC. Protein interaction verification and functional annotation by integrated analysis of genome-scale data. Molecular Cell. 9: 1133-43. PMID 12049748 DOI: 10.1016/S1097-2765(02)00531-2 |
0.462 |
|
| 2001 |
Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, Stoeckert C, Aach J, Ansorge W, Ball CA, Causton HC, Gaasterland T, Glenisson P, Holstege FC, Kim IF, Markowitz V, et al. Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nature Genetics. 29: 365-71. PMID 11726920 DOI: 10.1038/Ng1201-365 |
0.494 |
|
| 2001 |
Brazma A, Vilo J. Gene expression data analysis. Microbes and Infection / Institut Pasteur. 3: 823-9. PMID 11580977 DOI: 10.1016/S1286-4579(01)01440-X |
0.495 |
|
| 2000 |
Brazma A, Vilo J. Gene expression data analysis. Febs Letters. 480: 17-24. PMID 10967323 DOI: 10.1016/S0014-5793(00)01772-5 |
0.503 |
|
| 2000 |
Brazma A, Robinson A, Cameron G, Ashburner M. One-stop shop for microarray data. Nature. 403: 699-700. PMID 10693778 DOI: 10.1038/35001676 |
0.406 |
|
| 1999 |
Vilo J, Brazma A, Jonassen I, Ukkonen E. Discovery of putative transcription factor binding sites from microarray-based gene expression profiles Nature Genetics. 23: 79-80. DOI: 10.1038/14420 |
0.438 |
|
| 1999 |
Robinson A, Brazma A. Data mining and visualisation of microarray gene expression data Nature Genetics. 23: 71-71. DOI: 10.1038/14392 |
0.479 |
|
| 1999 |
Brazma A, Robinson A, Vilo J. A public repository for DNA microarray-based gene expression data Nature Genetics. 23: 34-34. DOI: 10.1038/14271 |
0.511 |
|
| 1998 |
Brazma A, Jonassen I, Vilo J, Ukkonen E. Predicting gene regulatory elements in silico on a genomic scale Genome Research. 8: 1202-1215. PMID 9847082 |
0.331 |
|
| Show low-probability matches. |