Eileen E. M. Furlong, Ph.D. - Publications

Affiliations: 
Genome Biology European Molecular Biology 

39 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Schor IE, Degner JF, Harnett D, Cannavò E, Casale FP, Shim H, Garfield DA, Birney E, Stephens M, Stegle O, Furlong EE. Promoter shape varies across populations and affects promoter evolution and expression noise. Nature Genetics. PMID 28191888 DOI: 10.1038/ng.3791  0.4
2016 Tica J, Lee E, Untergasser A, Meiers S, Garfield DA, Gokcumen O, Furlong EE, Park PJ, Stütz AM, Korbel JO. Next-generation sequencing-based detection of germline L1-mediated transductions. Bmc Genomics. 17: 342. PMID 27161561 DOI: 10.1186/s12864-016-2670-x  0.4
2015 Cannavò E, Khoueiry P, Garfield DA, Geeleher P, Zichner T, Gustafson EH, Ciglar L, Korbel JO, Furlong EE. Shadow Enhancers Are Pervasive Features of Developmental Regulatory Networks. Current Biology : Cb. PMID 26687625 DOI: 10.1016/j.cub.2015.11.034  0.4
2015 Klein FA, Pakozdi T, Anders S, Ghavi-Helm Y, Furlong EE, Huber W. FourCSeq: analysis of 4C sequencing data. Bioinformatics (Oxford, England). PMID 26034064 DOI: 10.1093/bioinformatics/btv335  0.4
2015 Nitta KR, Jolma A, Yin Y, Morgunova E, Kivioja T, Akhtar J, Hens K, Toivonen J, Deplancke B, Furlong EE, Taipale J. Conservation of transcription factor binding specificities across 600 million years of bilateria evolution. Elife. 4. PMID 25779349 DOI: 10.7554/eLife.04837  0.4
2014 Hughes CS, Foehr S, Garfield DA, Furlong EE, Steinmetz LM, Krijgsveld J. Ultrasensitive proteome analysis using paramagnetic bead technology. Molecular Systems Biology. 10: 757. PMID 25358341  0.4
2014 Ghavi-Helm Y, Klein FA, Pakozdi T, Ciglar L, Noordermeer D, Huber W, Furlong EE. Enhancer loops appear stable during development and are associated with paused polymerase. Nature. 512: 96-100. PMID 25043061 DOI: 10.1038/nature13417  0.4
2014 Rembold M, Ciglar L, Yáñez-Cuna JO, Zinzen RP, Girardot C, Jain A, Welte MA, Stark A, Leptin M, Furlong EE. A conserved role for Snail as a potentiator of active transcription. Genes & Development. 28: 167-81. PMID 24402316 DOI: 10.1101/gad.230953.113  0.4
2014 Erceg J, Saunders TE, Girardot C, Devos DP, Hufnagel L, Furlong EE. Subtle changes in motif positioning cause tissue-specific effects on robustness of an enhancer's activity. Plos Genetics. 10: e1004060. PMID 24391522 DOI: 10.1371/journal.pgen.1004060  0.4
2014 Hughes CS, Foehr S, Garfield DA, Furlong EE, Steinmetz LM, Krijgsveld J. Ultrasensitive proteome analysis using paramagnetic bead technology Molecular Systems Biology. 10. DOI: 10.15252/msb.20145625  0.4
2013 Zichner T, Garfield DA, Rausch T, Stütz AM, Cannavó E, Braun M, Furlong EE, Korbel JO. Impact of genomic structural variation in Drosophila melanogaster based on population-scale sequencing. Genome Research. 23: 568-79. PMID 23222910 DOI: 10.1101/gr.142646.112  0.4
2012 Spivakov M, Akhtar J, Kheradpour P, Beal K, Girardot C, Koscielny G, Herrero J, Kellis M, Furlong EE, Birney E. Analysis of variation at transcription factor binding sites in Drosophila and humans. Genome Biology. 13: R49. PMID 22950968 DOI: 10.1186/gb-2012-13-9-r49  0.4
2012 Spitz F, Furlong EE. Transcription factors: from enhancer binding to developmental control. Nature Reviews. Genetics. 13: 613-26. PMID 22868264 DOI: 10.1038/nrg3207  0.4
2012 Delhomme N, Padioleau I, Furlong EE, Steinmetz LM. easyRNASeq: a bioconductor package for processing RNA-Seq data. Bioinformatics (Oxford, England). 28: 2532-3. PMID 22847932 DOI: 10.1093/bioinformatics/bts477  0.4
2012 Bonn S, Zinzen RP, Perez-Gonzalez A, Riddell A, Gavin AC, Furlong EE. Cell type-specific chromatin immunoprecipitation from multicellular complex samples using BiTS-ChIP. Nature Protocols. 7: 978-94. PMID 22538849 DOI: 10.1038/nprot.2012.049  0.4
2012 Junion G, Spivakov M, Girardot C, Braun M, Gustafson EH, Birney E, Furlong EE. A transcription factor collective defines cardiac cell fate and reflects lineage history. Cell. 148: 473-86. PMID 22304916 DOI: 10.1016/j.cell.2012.01.030  0.4
2012 Bonn S, Zinzen RP, Girardot C, Gustafson EH, Perez-Gonzalez A, Delhomme N, Ghavi-Helm Y, WilczyÅ„ski B, Riddell A, Furlong EE. Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development. Nature Genetics. 44: 148-56. PMID 22231485 DOI: 10.1038/ng.1064  0.4
2010 Furlong EE. The importance of being specified: cell fate decisions and their role in cell biology. Molecular Biology of the Cell. 21: 3797-8. PMID 21079016 DOI: 10.1091/mbc.E10-05-0436  0.4
2010 Cunha PM, Sandmann T, Gustafson EH, Ciglar L, Eichenlaub MP, Furlong EE. Combinatorial binding leads to diverse regulatory responses: Lmd is a tissue-specific modulator of Mef2 activity. Plos Genetics. 6: e1001014. PMID 20617173 DOI: 10.1371/journal.pgen.1001014  0.4
2009 Ciglar L, Furlong EE. Conservation and divergence in developmental networks: a view from Drosophila myogenesis. Current Opinion in Cell Biology. 21: 754-60. PMID 19896355 DOI: 10.1016/j.ceb.2009.10.001  0.4
2009 Zinzen RP, Girardot C, Gagneur J, Braun M, Furlong EE. Combinatorial binding predicts spatio-temporal cis-regulatory activity. Nature. 462: 65-70. PMID 19890324 DOI: 10.1038/nature08531  0.4
2009 Liu YH, Jakobsen JS, Valentin G, Amarantos I, Gilmour DT, Furlong EE. A systematic analysis of Tinman function reveals Eya and JAK-STAT signaling as essential regulators of muscle development. Developmental Cell. 16: 280-91. PMID 19217429 DOI: 10.1016/j.devcel.2009.01.006  0.4
2008 Zinzen RP, Furlong EE. Divergence in cis-regulatory networks: taking the 'species' out of cross-species analysis. Genome Biology. 9: 240. PMID 19012800 DOI: 10.1186/gb-2008-9-11-240  0.4
2008 Shah PK, Tripathi LP, Jensen LJ, Gahnim M, Mason C, Furlong EE, Rodrigues V, White KP, Bork P, Sowdhamini R. Enhanced function annotations for Drosophila serine proteases: a case study for systematic annotation of multi-member gene families. Gene. 407: 199-215. PMID 17996400 DOI: 10.1016/j.gene.2007.10.012  0.4
2008 Haudry Y, Berube H, Letunic I, Weeber PD, Gagneur J, Girardot C, Kapushesky M, Arendt D, Bork P, Brazma A, Furlong EE, Wittbrodt J, Henrich T. 4DXpress: a database for cross-species expression pattern comparisons. Nucleic Acids Research. 36: D847-53. PMID 17916571 DOI: 10.1093/nar/gkm797  0.4
2008 Haudry Y, Ong CK, Ettwiller L, Berube H, Letunic I, Kapushesky M, Weeber PD, Wang X, Gagneur J, Girardot C, Arendt D, Bork P, Brazma A, Furlong E, Wittbrodt J, et al. Comparing and analysing gene expression patterns across animal species using 4DXpress Series On Advances in Bioinformatics and Computational Biology. 6: 373-382.  0.4
2007 Hooper SD, Boué S, Krause R, Jensen LJ, Mason CE, Ghanim M, White KP, Furlong EE, Bork P. Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis. Molecular Systems Biology. 3: 72. PMID 17224916 DOI: 10.1038/msb4100112  0.4
2006 Spitz F, Furlong EE. Genomics and development: Taking developmental biology to new heights. Developmental Cell. 11: 451-7. PMID 17051688 DOI: 10.1016/j.devcel.2006.09.013  0.4
2006 Zimmermann G, Furlong EE, Suyama K, Scott MP. Mes2, a MADF-containing transcription factor essential for Drosophila development. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 235: 3387-95. PMID 17029287 DOI: 10.1002/dvdy.20970  0.4
2006 Brandt A, Papagiannouli F, Wagner N, Wilsch-Bräuninger M, Braun M, Furlong EE, Loserth S, Wenzl C, Pilot F, Vogt N, Lecuit T, Krohne G, Grosshans J. Developmental control of nuclear size and shape by Kugelkern and Kurzkern. Current Biology : Cb. 16: 543-52. PMID 16458513 DOI: 10.1016/j.cub.2006.01.051  0.4
2005 Furlong EE. A functional genomics approach to identify new regulators of Wnt signaling. Developmental Cell. 8: 624-6. PMID 15866154 DOI: 10.1016/j.devcel.2005.04.006  0.4
2005 Qiu F, Brendel S, Cunha PM, Astola N, Song B, Furlong EE, Leonard KR, Bullard B. Myofilin, a protein in the thick filaments of insect muscle. Journal of Cell Science. 118: 1527-36. PMID 15769842 DOI: 10.1242/jcs.02281  0.4
2004 Hollich V, Johnson E, Furlong EE, Beckmann B, Carlson J, Celniker SE, Hoheisel JD. Creation of a minimal tiling path of genomic clones for Drosophila: provision of a common resource. Biotechniques. 37: 282-4. PMID 15335221  0.4
2004 Furlong EE. Integrating transcriptional and signalling networks during muscle development. Current Opinion in Genetics & Development. 14: 343-50. PMID 15261649 DOI: 10.1016/j.gde.2004.06.011  0.4
2003 Artero R, Furlong EE, Beckett K, Scott MP, Baylies M. Notch and Ras signaling pathway effector genes expressed in fusion competent and founder cells during Drosophila myogenesis. Development (Cambridge, England). 130: 6257-72. PMID 14602676 DOI: 10.1242/dev.00843  0.4
2002 Arbeitman MN, Furlong EE, Imam F, Johnson E, Null BH, Baker BS, Krasnow MA, Scott MP, Davis RW, White KP. Gene expression during the life cycle of Drosophila melanogaster. Science (New York, N.Y.). 297: 2270-5. PMID 12351791 DOI: 10.1126/science.1072152  0.4
2001 Furlong EE, Andersen EC, Null B, White KP, Scott MP. Patterns of gene expression during Drosophila mesoderm development. Science (New York, N.Y.). 293: 1629-33. PMID 11486054 DOI: 10.1126/science.1062660  0.4
2001 Furlong EE, Profitt D, Scott MP. Automated sorting of live transgenic embryos. Nature Biotechnology. 19: 153-6. PMID 11175730 DOI: 10.1038/84422  0.4
1992 Barniville G, Hartigan PJ, Lydon A, Rawas O, Andrews JF, Donne B, Kelly M, Brady C, McNamara B, Taylor D, Ishtiaq A, Glacken P, O'brien M, Moraes D, Tyrrell J, ... ... Furlong E, et al. Royal academy of medicine in Ireland section of biomedical sciences - Proceedings of meeting held 23rd and 24th June, 1992 Irish Journal of Medical Science. 161: 639-652. DOI: 10.1007/BF02983772  0.4
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