Eileen E. M. Furlong, Ph.D. - Publications

Affiliations: 
Genome Biology European Molecular Biology 

103 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Kögler AC, Kherdjemil Y, Bender K, Rabinowitz A, Marco-Ferreres R, Furlong EEM. Extremely rapid and reversible optogenetic perturbation of nuclear proteins in living embryos. Developmental Cell. PMID 34363757 DOI: 10.1016/j.devcel.2021.07.011  1
2021 Liu J, Viales RR, Khoueiry P, Reddington JP, Girardot C, Furlong E, Robinson-Rechavi M. The hourglass model of evolutionary conservation during embryogenesis extends to developmental enhancers with signatures of positive selection. Genome Research. PMID 34266978 DOI: 10.1101/gr.275212.121  1
2020 Floc'hlay S, Wong E, Zhao B, Viales RR, Thomas-Chollier M, Thieffry D, Garfield DA, Furlong EEM. -acting variation is common across regulatory layers but is often buffered during embryonic development. Genome Research. PMID 33310749 DOI: 10.1101/gr.266338.120  1
2020 Reddington JP, Garfield DA, Sigalova OM, Karabacak Calviello A, Marco-Ferreres R, Girardot C, Viales RR, Degner JF, Ohler U, Furlong EEM. Lineage-Resolved Enhancer and Promoter Usage during a Time Course of Embryogenesis. Developmental Cell. PMID 33171098 DOI: 10.1016/j.devcel.2020.10.009  1
2020 McGuire AL, Gabriel S, Tishkoff SA, Wonkam A, Chakravarti A, Furlong EEM, Treutlein B, Meissner A, Chang HY, López-Bigas N, Segal E, Kim JS. The road ahead in genetics and genomics. Nature Reviews. Genetics. PMID 32839576 DOI: 10.1038/S41576-020-0272-6  0.01
2019 Viets K, Sauria MEG, Chernoff C, Rodriguez Viales R, Echterling M, Anderson C, Tran S, Dove A, Goyal R, Voortman L, Gordus A, Furlong EEM, Taylor J, Johnston RJ. Characterization of Button Loci that Promote Homologous Chromosome Pairing and Cell-Type-Specific Interchromosomal Gene Regulation. Developmental Cell. PMID 31607649 DOI: 10.1016/J.Devcel.2019.09.007  0.04
2019 Mir M, Bickmore W, Furlong EEM, Narlikar G. Chromatin topology, condensates and gene regulation: shifting paradigms or just a phase? Development (Cambridge, England). 146. PMID 31554625 DOI: 10.1242/Dev.182766  0.04
2019 Zhou J, Schor IE, Yao V, Theesfeld CL, Marco-Ferreres R, Tadych A, Furlong EEM, Troyanskaya OG. Accurate genome-wide predictions of spatio-temporal gene expression during embryonic development. Plos Genetics. 15: e1008382. PMID 31553718 DOI: 10.1371/Journal.Pgen.1008382  1
2019 Ghavi-Helm Y, Jankowski A, Meiers S, Viales RR, Korbel JO, Furlong EEM. Highly rearranged chromosomes reveal uncoupling between genome topology and gene expression. Nature Genetics. PMID 31308546 DOI: 10.1038/S41588-019-0462-3  1
2019 Khoueiry P, Ward Gahlawat A, Petretich M, Michon AM, Simola D, Lam E, Furlong EE, Benes V, Dawson MA, Prinjha RK, Drewes G, Grandi P. BRD4 bimodal binding at promoters and drug-induced displacement at Pol II pause sites associates with I-BET sensitivity. Epigenetics & Chromatin. 12: 39. PMID 31266503 DOI: 10.1186/s13072-019-0286-5  1
2019 Peng PC, Khoueiry P, Girardot C, Reddington JP, Garfield DA, Furlong EEM, Sinha S. The role of chromatin accessibility in cis-regulatory evolution. Genome Biology and Evolution. PMID 31114856 DOI: 10.1093/Gbe/Evz103  1
2019 Wu WH, Kuo TH, Kao CW, Girardot C, Hung SJ, Liu T, Furlong EEM, Liu YH. Expanding the mesodermal transcriptional network by genome-wide identification of Zinc finger homeodomain 1 (Zfh1) targets. Febs Letters. PMID 31093969 DOI: 10.1002/1873-3468.13443  1
2019 van Steensel B, Furlong EEM. The role of transcription in shaping the spatial organization of the genome. Nature Reviews. Molecular Cell Biology. PMID 30886333 DOI: 10.1038/S41580-019-0114-6  0.08
2018 Schor IE, Bussotti G, Maleš M, Forneris M, Viales RR, Enright AJ, Furlong EEM. Non-coding RNA Expression, Function, and Variation during Drosophila Embryogenesis. Current Biology : Cb. 28: 3547-3561.e9. PMID 30393032 DOI: 10.1016/J.Cub.2018.09.026  1
2018 Furlong EEM, Levine M. Developmental enhancers and chromosome topology. Science (New York, N.Y.). 361: 1341-1345. PMID 30262496 DOI: 10.1126/Science.Aau0320  0.04
2018 Gambetta MC, Furlong EEM. The Insulator Protein CTCF Is Required for Correct Gene Expression, but Not for Embryonic Development in . Genetics. PMID 30021792 DOI: 10.1534/Genetics.118.301350  0.01
2018 Utharala R, Tseng Q, Furlong EEM, Merten CA. A versatile, low-cost, multi-way microfluidic sorter for droplets, cells and embryos. Analytical Chemistry. PMID 29688703 DOI: 10.1021/Acs.Analchem.7B04689  1
2018 Cusanovich DA, Reddington JP, Garfield DA, Daza RM, Aghamirzaie D, Marco-Ferreres R, Pliner HA, Christiansen L, Qiu X, Steemers FJ, Trapnell C, Shendure J, Furlong EEM. The cis-regulatory dynamics of embryonic development at single-cell resolution. Nature. PMID 29539636 DOI: 10.1038/Nature25981  1
2018 Mikhaylichenko O, Bondarenko V, Harnett D, Schor IE, Males M, Viales RR, Furlong EEM. The degree of enhancer or promoter activity is reflected by the levels and directionality of eRNA transcription. Genes & Development. PMID 29378788 DOI: 10.1101/Gad.308619.117  1
2018 Furlong E, Darley A, Fox PA, Buick AR, Kotronoulas G, Miller M, Smith R, Miaskowski C, Patiraki E, Katsaragakis S, Ream E, Armes J, Gaiger A, Berg GV, McCrone P, et al. Adaptation and implementation of a multinational eHealth intervention for people with cancer: reflections from the field Journal of Medical Internet Research. DOI: 10.2196/Preprints.10813  1
2017 Lehmann LH, Jebessa ZH, Kreusser MM, Horsch A, He T, Kronlage M, Dewenter M, Sramek V, Oehl U, Krebs-Haupenthal J, von der Lieth AH, Schmidt A, Sun Q, Ritterhoff J, Finke D, ... ... Furlong EEM, et al. A proteolytic fragment of histone deacetylase 4 protects the heart from failure by regulating the hexosamine biosynthetic pathway. Nature Medicine. PMID 29227474 DOI: 10.1038/Nm.4452  0.01
2017 Zolotarev N, Maksimenko O, Kyrchanova O, Sokolinskaya E, Osadchiy I, Girardot C, Bonchuk A, Ciglar L, Furlong EEM, Georgiev P. Opbp is a new architectural/insulator protein required for ribosomal gene expression. Nucleic Acids Research. PMID 29036346 DOI: 10.1093/Nar/Gkx840  1
2017 Schauer T, Ghavi-Helm Y, Sexton T, Albig C, Regnard C, Cavalli G, Furlong EE, Becker PB. Chromosome topology guides the Drosophila Dosage Compensation Complex for target gene activation. Embo Reports. PMID 28794204 DOI: 10.15252/Embr.201744292  1
2017 Khoueiry P, Girardot C, Ciglar L, Peng PC, Gustafson EH, Sinha S, Furlong EE. Uncoupling evolutionary changes in DNA sequence, transcription factor occupancy and enhancer activity. Elife. 6. PMID 28792889 DOI: 10.7554/Elife.28440  1
2017 Maguire R, Fox PA, McCann L, Miaskowski C, Kotronoulas G, Miller M, Furlong E, Ream E, Armes J, Patiraki E, Gaiger A, Berg GV, Flowerday A, Donnan P, McCrone P, et al. The eSMART study protocol: a randomised controlled trial to evaluate electronic symptom management using the advanced symptom management system (ASyMS) remote technology for patients with cancer. Bmj Open. 7: e015016. PMID 28592577 DOI: 10.1136/Bmjopen-2016-015016  1
2017 Pollex T, Furlong EEM. Correlation Does Not Imply Causation: Histone Methyltransferases, but Not Histone Methylation, SET the Stage for Enhancer Activation. Molecular Cell. 66: 439-441. PMID 28525737 DOI: 10.1016/J.Molcel.2017.05.005  0.04
2017 Erceg J, Pakozdi T, Marco-Ferreres R, Ghavi-Helm Y, Girardot C, Bracken AP, Furlong EE. Dual functionality of cis-regulatory elements as developmental enhancers and Polycomb response elements. Genes & Development. PMID 28381411 DOI: 10.1101/Gad.292870.116  1
2017 Monfort M, Furlong EE, Girardot C. Dynamix: Dynamic visualization by automatic selection of informative tracks from hundreds of genomic data sets. Bioinformatics (Oxford, England). PMID 28334301 DOI: 10.1093/Bioinformatics/Btx141  1
2017 Schor IE, Degner JF, Harnett D, Cannavò E, Casale FP, Shim H, Garfield DA, Birney E, Stephens M, Stegle O, Furlong EE. Promoter shape varies across populations and affects promoter evolution and expression noise. Nature Genetics. PMID 28191888 DOI: 10.1038/Ng.3791  1
2016 Cannavò E, Koelling N, Harnett D, Garfield D, Casale FP, Ciglar L, Gustafson HE, Viales RR, Marco-Ferreres R, Degner JF, Zhao B, Stegle O, Birney E, Furlong EE. Genetic variants regulating expression levels and isoform diversity during embryogenesis. Nature. PMID 28024300 DOI: 10.1038/Nature20802  1
2016 Seyres D, Ghavi-Helm Y, Junion G, Taghli-Lamallem O, Guichard C, Röder L, Girardot C, Furlong EE, Perrin L. Identification and in silico modeling of enhancers reveals new features of the cardiac differentiation network. Development (Cambridge, England). 143: 4533-4542. PMID 27899510 DOI: 10.1242/Dev.140822  1
2016 Ghavi-Helm Y, Zhao B, Furlong EE. Chromatin Immunoprecipitation for Analyzing Transcription Factor Binding and Histone Modifications in Drosophila. Methods in Molecular Biology (Clifton, N.J.). 1478: 263-277. PMID 27730588 DOI: 10.1007/978-1-4939-6371-3_16  1
2016 Girardot C, Scholtalbers J, Sauer S, Su SY, Furlong EE. Je, a versatile suite to handle multiplexed NGS libraries with unique molecular identifiers. Bmc Bioinformatics. 17: 419. PMID 27717304 DOI: 10.1186/S12859-016-1284-2  1
2016 Mbodj A, Gustafson EH, Ciglar L, Junion G, Gonzalez A, Girardot C, Perrin L, Furlong EE, Thieffry D. Qualitative Dynamical Modelling Can Formally Explain Mesoderm Specification and Predict Novel Developmental Phenotypes. Plos Computational Biology. 12: e1005073. PMID 27599298 DOI: 10.1371/Journal.Pcbi.1005073  1
2016 Ghavi-Helm Y, Klein FA, Pakozdi T, Ciglar L, Noordermeer D, Huber W, Furlong EE. Corrigendum: Enhancer loops appear stable during development and are associated with paused polymerase. Nature. PMID 27409805 DOI: 10.1038/Nature18962  1
2016 Tica J, Lee E, Untergasser A, Meiers S, Garfield DA, Gokcumen O, Furlong EE, Park PJ, Stütz AM, Korbel JO. Next-generation sequencing-based detection of germline L1-mediated transductions. Bmc Genomics. 17: 342. PMID 27161561 DOI: 10.1186/S12864-016-2670-X  1
2016 Miaskowski C, Cooper BA, Aouizerat B, Melisko M, Chen LM, Dunn L, Hu X, Kober KM, Mastick J, Levine JD, Hammer M, Wright F, Harris J, Armes J, Furlong E, et al. The symptom phenotype of oncology outpatients remains relatively stable from prior to through 1 week following chemotherapy. European Journal of Cancer Care. PMID 26777053 DOI: 10.1111/Ecc.12437  1
2015 Cannavò E, Khoueiry P, Garfield DA, Geeleher P, Zichner T, Gustafson EH, Ciglar L, Korbel JO, Furlong EE. Shadow Enhancers Are Pervasive Features of Developmental Regulatory Networks. Current Biology : Cb. PMID 26687625 DOI: 10.1016/J.Cub.2015.11.034  1
2015 Furlong EE, AuBuchon S, Kraut J, Joiner N, Knowles J, Lewis K, Win M, Furlong J. From Crisis to Crowd Control. Commentary: A Crisis in Comparative Psychology: Where Have All the Undergraduates Gone? Frontiers in Psychology. 6: 1729. PMID 26617553 DOI: 10.3389/fpsyg.2015.01729  1
2015 Klein FA, Pakozdi T, Anders S, Ghavi-Helm Y, Furlong EE, Huber W. FourCSeq: analysis of 4C sequencing data. Bioinformatics (Oxford, England). PMID 26034064 DOI: 10.1093/Bioinformatics/Btv335  1
2015 Nitta KR, Jolma A, Yin Y, Morgunova E, Kivioja T, Akhtar J, Hens K, Toivonen J, Deplancke B, Furlong EE, Taipale J. Conservation of transcription factor binding specificities across 600 million years of bilateria evolution. Elife. 4. PMID 25779349 DOI: 10.7554/Elife.04837  1
2015 Nitta KR, Jolma A, Yin Y, Morgunova E, Kivioja T, Akhtar J, Hens K, Toivonen J, Deplancke B, Furlong EEM, Taipale J. Author response: Conservation of transcription factor binding specificities across 600 million years of bilateria evolution Elife. DOI: 10.7554/Elife.04837.037  1
2014 Hughes CS, Foehr S, Garfield DA, Furlong EE, Steinmetz LM, Krijgsveld J. Ultrasensitive proteome analysis using paramagnetic bead technology. Molecular Systems Biology. 10: 757. PMID 25358341 DOI: 10.15252/Msb.20145625  1
2014 Ghavi-Helm Y, Klein FA, Pakozdi T, Ciglar L, Noordermeer D, Huber W, Furlong EE. Enhancer loops appear stable during development and are associated with paused polymerase. Nature. 512: 96-100. PMID 25043061 DOI: 10.1038/Nature13417  1
2014 Ciglar L, Girardot C, WilczyÅ„ski B, Braun M, Furlong EE. Coordinated repression and activation of two transcriptional programs stabilizes cell fate during myogenesis. Development (Cambridge, England). 141: 2633-43. PMID 24961800 DOI: 10.1242/Jcs.158311  1
2014 Rembold M, Ciglar L, Yáñez-Cuna JO, Zinzen RP, Girardot C, Jain A, Welte MA, Stark A, Leptin M, Furlong EE. A conserved role for Snail as a potentiator of active transcription. Genes & Development. 28: 167-81. PMID 24402316 DOI: 10.1101/Gad.230953.113  1
2014 Erceg J, Saunders TE, Girardot C, Devos DP, Hufnagel L, Furlong EE. Subtle changes in motif positioning cause tissue-specific effects on robustness of an enhancer's activity. Plos Genetics. 10: e1004060. PMID 24391522 DOI: 10.1371/Journal.Pgen.1004060  1
2014 Ireland PM, McMahon RM, Marshall LE, Halili M, Furlong E, Tay S, Martin JL, Sarkar-Tyson M. Disarming Burkholderia pseudomallei: structural and functional characterization of a disulfide oxidoreductase (DsbA) required for virulence in vivo. Antioxidants & Redox Signaling. 20: 606-17. PMID 23901809 DOI: 10.1089/ars.2013.5375  1
2014 Hughes CS, Foehr S, Garfield DA, Furlong EE, Steinmetz LM, Krijgsveld J. Ultrasensitive proteome analysis using paramagnetic bead technology Molecular Systems Biology. 10. DOI: 10.15252/msb.20145625  1
2014 Furlong EE, Santos LR. Response to Miller and Hare Moral Psychology, Volume 4: Free Will and Moral Responsibility. 375-380.  1
2014 Furlong EE, Santos LR. Evolutionary insights into the nature of choice: Evidence from nonhuman primates Moral Psychology, Volume 4: Free Will and Moral Responsibility. 347-360.  1
2013 Mbodj A, Junion G, Brun C, Furlong EE, Thieffry D. Logical modelling of Drosophila signalling pathways. Molecular Biosystems. 9: 2248-58. PMID 23868318 DOI: 10.1039/C3Mb70187E  1
2013 Zichner T, Garfield DA, Rausch T, Stütz AM, Cannavó E, Braun M, Furlong EE, Korbel JO. Impact of genomic structural variation in Drosophila melanogaster based on population-scale sequencing. Genome Research. 23: 568-79. PMID 23222910 DOI: 10.1101/Gr.142646.112  1
2012 Wilczynski B, Liu YH, Yeo ZX, Furlong EE. Predicting spatial and temporal gene expression using an integrative model of transcription factor occupancy and chromatin state. Plos Computational Biology. 8: e1002798. PMID 23236268 DOI: 10.1371/Journal.Pcbi.1002798  1
2012 Tseng Q, Lomonosov AM, Furlong EE, Merten CA. Fragmentation of DNA in a sub-microliter microfluidic sonication device. Lab On a Chip. 12: 4677-82. PMID 23014736 DOI: 10.1039/C2Lc40595D  1
2012 Spivakov M, Akhtar J, Kheradpour P, Beal K, Girardot C, Koscielny G, Herrero J, Kellis M, Furlong EE, Birney E. Analysis of variation at transcription factor binding sites in Drosophila and humans. Genome Biology. 13: R49. PMID 22950968 DOI: 10.1186/Gb-2012-13-9-R49  1
2012 Spitz F, Furlong EE. Transcription factors: from enhancer binding to developmental control. Nature Reviews. Genetics. 13: 613-26. PMID 22868264 DOI: 10.1038/Nrg3207  1
2012 Delhomme N, Padioleau I, Furlong EE, Steinmetz LM. easyRNASeq: a bioconductor package for processing RNA-Seq data. Bioinformatics (Oxford, England). 28: 2532-3. PMID 22847932 DOI: 10.1093/Bioinformatics/Bts477  1
2012 Bonn S, Zinzen RP, Perez-Gonzalez A, Riddell A, Gavin AC, Furlong EE. Cell type-specific chromatin immunoprecipitation from multicellular complex samples using BiTS-ChIP. Nature Protocols. 7: 978-94. PMID 22538849 DOI: 10.1038/Nprot.2012.049  1
2012 Junion G, Spivakov M, Girardot C, Braun M, Gustafson EH, Birney E, Furlong EE. A transcription factor collective defines cardiac cell fate and reflects lineage history. Cell. 148: 473-86. PMID 22304916 DOI: 10.1016/J.Cell.2012.01.030  1
2012 Bonn S, Zinzen RP, Girardot C, Gustafson EH, Perez-Gonzalez A, Delhomme N, Ghavi-Helm Y, WilczyÅ„ski B, Riddell A, Furlong EE. Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development. Nature Genetics. 44: 148-56. PMID 22231485 DOI: 10.1038/Ng.1064  1
2012 Ghavi-Helm Y, Furlong EE. Analyzing transcription factor occupancy during embryo development using ChIP-seq. Methods in Molecular Biology (Clifton, N.J.). 786: 229-45. PMID 21938630 DOI: 10.1007/978-1-61779-292-2_14  1
2011 Furlong EE. Molecular biology: A fly in the face of genomics. Nature. 471: 458-9. PMID 21430772 DOI: 10.1038/471458A  0.01
2011 Opfer JE, Furlong EE. How numbers bias preschoolers' spatial search Journal of Cross-Cultural Psychology. 42: 682-695. DOI: 10.1177/0022022111406098  1
2010 Furlong EE. The importance of being specified: cell fate decisions and their role in cell biology. Molecular Biology of the Cell. 21: 3797-8. PMID 21079016 DOI: 10.1091/mbc.E10-05-0436  1
2010 Opfer JE, Thompson CA, Furlong EE. Early development of spatial-numeric associations: evidence from spatial and quantitative performance of preschoolers. Developmental Science. 13: 761-71. PMID 20712742 DOI: 10.1111/j.1467-7687.2009.00934.x  1
2010 Cunha PM, Sandmann T, Gustafson EH, Ciglar L, Eichenlaub MP, Furlong EE. Combinatorial binding leads to diverse regulatory responses: Lmd is a tissue-specific modulator of Mef2 activity. Plos Genetics. 6: e1001014. PMID 20617173 DOI: 10.1371/Journal.Pgen.1001014  1
2010 WilczyÅ„ski B, Furlong EE. Dynamic CRM occupancy reflects a temporal map of developmental progression. Molecular Systems Biology. 6: 383. PMID 20571532 DOI: 10.1038/Msb.2010.35  1
2010 Honkela A, Girardot C, Gustafson EH, Liu YH, Furlong EE, Lawrence ND, Rattray M. Model-based method for transcription factor target identification with limited data. Proceedings of the National Academy of Sciences of the United States of America. 107: 7793-8. PMID 20385836 DOI: 10.1073/Pnas.0914285107  1
2010 Wilczynski B, Furlong EE. Challenges for modeling global gene regulatory networks during development: insights from Drosophila. Developmental Biology. 340: 161-9. PMID 19874814 DOI: 10.1016/J.Ydbio.2009.10.032  1
2010 Furlong E. The role of nurses and nursing education in the palliative care of patients and their families Ethical Foundations of Palliative Care For Alzheimer Disease. 243-260.  1
2009 Ciglar L, Furlong EE. Conservation and divergence in developmental networks: a view from Drosophila myogenesis. Current Opinion in Cell Biology. 21: 754-60. PMID 19896355 DOI: 10.1016/J.Ceb.2009.10.001  1
2009 Zinzen RP, Girardot C, Gagneur J, Braun M, Furlong EE. Combinatorial binding predicts spatio-temporal cis-regulatory activity. Nature. 462: 65-70. PMID 19890324 DOI: 10.1038/Nature08531  1
2009 Liu YH, Jakobsen JS, Valentin G, Amarantos I, Gilmour DT, Furlong EE. A systematic analysis of Tinman function reveals Eya and JAK-STAT signaling as essential regulators of muscle development. Developmental Cell. 16: 280-91. PMID 19217429 DOI: 10.1016/J.Devcel.2009.01.006  1
2009 Furlong EE, Opfer JE. Cognitive constraints on how economic rewards affect cooperation. Psychological Science. 20: 11-6. PMID 19037906 DOI: 10.1111/j.1467-9280.2008.02244.x  1
2008 Zinzen RP, Furlong EE. Divergence in cis-regulatory networks: taking the 'species' out of cross-species analysis. Genome Biology. 9: 240. PMID 19012800 DOI: 10.1186/Gb-2008-9-11-240  1
2008 Oktaba K, Gutiérrez L, Gagneur J, Girardot C, Sengupta AK, Furlong EE, Müller J. Dynamic regulation by polycomb group protein complexes controls pattern formation and the cell cycle in Drosophila. Developmental Cell. 15: 877-89. PMID 18993116 DOI: 10.1016/J.Devcel.2008.10.005  1
2008 Bonn S, Furlong EE. cis-Regulatory networks during development: a view of Drosophila. Current Opinion in Genetics & Development. 18: 513-20. PMID 18929653 DOI: 10.1016/J.Gde.2008.09.005  1
2008 Furlong EE. A topographical map of spatiotemporal patterns of gene expression. Developmental Cell. 14: 639-40. PMID 18477445 DOI: 10.1016/J.Devcel.2008.04.007  0.01
2008 Shah PK, Tripathi LP, Jensen LJ, Gahnim M, Mason C, Furlong EE, Rodrigues V, White KP, Bork P, Sowdhamini R. Enhanced function annotations for Drosophila serine proteases: a case study for systematic annotation of multi-member gene families. Gene. 407: 199-215. PMID 17996400 DOI: 10.1016/J.Gene.2007.10.012  1
2008 Haudry Y, Berube H, Letunic I, Weeber PD, Gagneur J, Girardot C, Kapushesky M, Arendt D, Bork P, Brazma A, Furlong EE, Wittbrodt J, Henrich T. 4DXpress: a database for cross-species expression pattern comparisons. Nucleic Acids Research. 36: D847-53. PMID 17916571 DOI: 10.1093/Nar/Gkm797  1
2008 Furlong EE, Boose KJ, Boysen ST. Raking it in: the impact of enculturation on chimpanzee tool use. Animal Cognition. 11: 83-97. PMID 17516100 DOI: 10.1007/s10071-007-0091-6  1
2008 Haudry Y, Ong CK, Ettwiller L, Berube H, Letunic I, Kapushesky M, Weeber PD, Wang X, Gagneur J, Girardot C, Arendt D, Bork P, Brazma A, Furlong E, Wittbrodt J, et al. Comparing and analysing gene expression patterns across animal species using 4DXpress Series On Advances in Bioinformatics and Computational Biology. 6: 373-382.  1
2007 Jakobsen JS, Braun M, Astorga J, Gustafson EH, Sandmann T, Karzynski M, Carlsson P, Furlong EE. Temporal ChIP-on-chip reveals Biniou as a universal regulator of the visceral muscle transcriptional network. Genes & Development. 21: 2448-60. PMID 17908931 DOI: 10.1101/Gad.437607  1
2007 Sandmann T, Girardot C, Brehme M, Tongprasit W, Stolc V, Furlong EE. A core transcriptional network for early mesoderm development in Drosophila melanogaster. Genes & Development. 21: 436-49. PMID 17322403 DOI: 10.1101/Gad.1509007  1
2007 Girardot C, Sklyar O, Grosz S, Huber W, Furlong EE. CoCo: a web application to display, store and curate ChIP-on-chip data integrated with diverse types of gene expression data. Bioinformatics (Oxford, England). 23: 771-3. PMID 17234641 DOI: 10.1093/Bioinformatics/Btl641  1
2007 Hooper SD, Boué S, Krause R, Jensen LJ, Mason CE, Ghanim M, White KP, Furlong EE, Bork P. Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis. Molecular Systems Biology. 3: 72. PMID 17224916 DOI: 10.1038/Msb4100112  1
2006 Sandmann T, Jakobsen JS, Furlong EE. ChIP-on-chip protocol for genome-wide analysis of transcription factor binding in Drosophila melanogaster embryos. Nature Protocols. 1: 2839-55. PMID 17406543 DOI: 10.1038/Nprot.2006.383  1
2006 Spitz F, Furlong EE. Genomics and development: Taking developmental biology to new heights. Developmental Cell. 11: 451-7. PMID 17051688 DOI: 10.1016/J.Devcel.2006.09.013  1
2006 Zimmermann G, Furlong EE, Suyama K, Scott MP. Mes2, a MADF-containing transcription factor essential for Drosophila development. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 235: 3387-95. PMID 17029287 DOI: 10.1002/dvdy.20970  1
2006 Sandmann T, Jensen LJ, Jakobsen JS, Karzynski MM, Eichenlaub MP, Bork P, Furlong EE. A temporal map of transcription factor activity: mef2 directly regulates target genes at all stages of muscle development. Developmental Cell. 10: 797-807. PMID 16740481 DOI: 10.1016/J.Devcel.2006.04.009  1
2006 Brandt A, Papagiannouli F, Wagner N, Wilsch-Bräuninger M, Braun M, Furlong EE, Loserth S, Wenzl C, Pilot F, Vogt N, Lecuit T, Krohne G, Grosshans J. Developmental control of nuclear size and shape by Kugelkern and Kurzkern. Current Biology : Cb. 16: 543-52. PMID 16458513 DOI: 10.1016/j.cub.2006.01.051  1
2005 Furlong EE. A functional genomics approach to identify new regulators of Wnt signaling. Developmental Cell. 8: 624-6. PMID 15866154 DOI: 10.1016/j.devcel.2005.04.006  1
2005 Qiu F, Brendel S, Cunha PM, Astola N, Song B, Furlong EE, Leonard KR, Bullard B. Myofilin, a protein in the thick filaments of insect muscle. Journal of Cell Science. 118: 1527-36. PMID 15769842 DOI: 10.1242/Jcs.02281  1
2004 Hollich V, Johnson E, Furlong EE, Beckmann B, Carlson J, Celniker SE, Hoheisel JD. Creation of a minimal tiling path of genomic clones for Drosophila: provision of a common resource. Biotechniques. 37: 282-4. PMID 15335221 DOI: 10.2144/04372Mt01  1
2004 Furlong EE. Integrating transcriptional and signalling networks during muscle development. Current Opinion in Genetics & Development. 14: 343-50. PMID 15261649 DOI: 10.1016/j.gde.2004.06.011  1
2003 Artero R, Furlong EE, Beckett K, Scott MP, Baylies M. Notch and Ras signaling pathway effector genes expressed in fusion competent and founder cells during Drosophila myogenesis. Development (Cambridge, England). 130: 6257-72. PMID 14602676 DOI: 10.1242/dev.00843  1
2002 Arbeitman MN, Furlong EE, Imam F, Johnson E, Null BH, Baker BS, Krasnow MA, Scott MP, Davis RW, White KP. Gene expression during the life cycle of Drosophila melanogaster. Science (New York, N.Y.). 297: 2270-5. PMID 12351791 DOI: 10.1126/Science.1072152  1
2001 Furlong EE, Andersen EC, Null B, White KP, Scott MP. Patterns of gene expression during Drosophila mesoderm development. Science (New York, N.Y.). 293: 1629-33. PMID 11486054 DOI: 10.1126/Science.1062660  1
2001 Furlong EE, Profitt D, Scott MP. Automated sorting of live transgenic embryos. Nature Biotechnology. 19: 153-6. PMID 11175730 DOI: 10.1038/84422  1
1996 Furlong EE, Keon NK, Thornton FD, Rein T, Martin F. Expression of a 74-kDa nuclear factor 1 (NF1) protein is induced in mouse mammary gland involution. Involution-enhanced occupation of a twin NF1 binding element in the testosterone-repressed prostate message-2/clusterin promoter. The Journal of Biological Chemistry. 271: 29688-97. PMID 8939902 DOI: 10.1074/Jbc.271.47.29688  1
1996 Furlong EE, Rein T, Martin F. YY1 and NF1 both activate the human p53 promoter by alternatively binding to a composite element, and YY1 and E1A cooperate to amplify p53 promoter activity. Molecular and Cellular Biology. 16: 5933-45. PMID 8816507 DOI: 10.1128/Mcb.16.10.5933  1
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