Darren Jack Obbard, D.Phil. - Related publications

Institute of Evoutionary Biology / CIIE University of Edinburgh, Edinburgh, Scotland, United Kingdom 
Evolutionary Genetics, Drosophila, Viruses
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Sakowski EG, Arora-Williams K, Tian F, Zayed AA, Zablocki O, Sullivan MB, Preheim SP. Interaction dynamics and virus-host range for estuarine actinophages captured by epicPCR. Nature Microbiology. PMID 33633401 DOI: 10.1038/s41564-021-00873-4   
2021 Montoya V, McLaughlin A, Mordecai GJ, Miller RL, Joy JB. Variable routes to genomic and host adaptation among coronaviruses. Journal of Evolutionary Biology. PMID 33751699 DOI: 10.1111/jeb.13771   
2021 Addetia A, Phung Q, Bradley BT, Lin M, Zhu H, Xie H, Huang ML, Greninger AL. In generation of BK and JC polyomavirus defective viral genomes in human urine samples associated with higher viral loads. Journal of Virology. PMID 33827948 DOI: 10.1128/JVI.00250-21   
2021 Sheffield L, Sciambra N, Evans A, Hagedorn E, Goltz C, Delfeld M, Kuhns H, Fierst JL, Chtarbanova S. Age-dependent impairment of disease tolerance is associated with a robust transcriptional response following RNA virus infection in Drosophila. G3 (Bethesda, Md.). PMID 33836060 DOI: 10.1093/g3journal/jkab116   
2021 Patra U, Mukhopadhyay U, Mukherjee A, Dutta S, Chawla-Sarkar M. Treading a HOSTile path: Mapping the dynamic landscape of host cell-rotavirus interactions to explore novel host-directed curative dimensions. Virulence. 12: 1022-1062. PMID 33818275 DOI: 10.1080/21505594.2021.1903198   
2021 Maximova OA, Sturdevant DE, Kash JC, Kanakabandi K, Xiao Y, Minai M, Moore IN, Taubenberger J, Martens C, Cohen JI, Pletnev AG. Virus infection of the CNS disrupts the immune-neural-synaptic axis via induction of pleiotropic gene regulation of host responses. Elife. 10. PMID 33599611 DOI: 10.7554/eLife.62273   
2021 Tangudu CS, Charles J, Nunez-Avellaneda D, Hargett AM, Brault AC, Blitvich BJ. Chimeric Zika viruses containing structural protein genes of insect-specific flaviviruses cannot replicate in vertebrate cells due to entry and post-translational restrictions. Virology. 559: 30-39. PMID 33812340 DOI: 10.1016/j.virol.2021.03.014   
2021 Lamy-Besnier Q, Brancotte B, Ménager H, Debarbieux L. Viral Host Range database, an online tool for recording, analyzing and disseminating virus-host interactions. Bioinformatics (Oxford, England). PMID 33594411 DOI: 10.1093/bioinformatics/btab070   
2021 Li K, Wang C, Yang F, Cao W, Zhu Z, Zheng H. Virus-Host Interactions in Foot-and-Mouth Disease Virus Infection. Frontiers in Immunology. 12: 571509. PMID 33717061 DOI: 10.3389/fimmu.2021.571509   
2021 Yi J, Peng J, Yang W, Zhu G, Ren J, Li D, Zheng H. Picornavirus 3C - a protease ensuring virus replication and subverting host responses. Journal of Cell Science. 134. PMID 33692152 DOI: 10.1242/jcs.253237   
2021 Tegtmeyer B, Vieyres G, Todt D, Lauber C, Ginkel C, Engelmann M, Herrmann M, Pfaller CK, Vondran FWR, Broering R, Vafadarnejad E, Saliba AE, Puff C, Baumgärtner W, Miskey C, et al. Initial HCV infection of adult hepatocytes triggers a temporally structured transcriptional program containing diverse pro- and anti-viral elements. Journal of Virology. PMID 33658347 DOI: 10.1128/JVI.00245-21   
2021 Wang F. Sending Out Alarms: A Perspective on Intercellular Communications in Insect Antiviral Immune Response. Frontiers in Immunology. 12: 613729. PMID 33708207 DOI: 10.3389/fimmu.2021.613729   
2021 Li M, Xing D, Su D, Wang D, Gao H, Lan C, Gu Z, Zhao T, Li C. Transcriptome Analysis of Responses to Dengue Virus 2 Infection in (Skuse) C6/36 Cells. Viruses. 13. PMID 33671824 DOI: 10.3390/v13020343   
2021 Gustavsen JA, Suttle CA. Role of phylogenetic structure in the dynamics of coastal viral assemblages. Applied and Environmental Microbiology. PMID 33741635 DOI: 10.1128/AEM.02704-20   
2021 Liu P, Zhang X, Zhang F, Xu M, Ye Z, Wang K, Liu S, Han X, Cheng Y, Zhong K, Zhang T, Li L, Ma Y, Chen M, Chen J, et al. A virus-derived siRNA activates plant immunity by interfering with ROS scavenging. Molecular Plant. PMID 33798746 DOI: 10.1016/j.molp.2021.03.022   
2021 Jin T, Yin J. Patterns of virus growth across the diversity of life. Integrative Biology : Quantitative Biosciences From Nano to Macro. PMID 33616184 DOI: 10.1093/intbio/zyab001   
2021 Jacobs JJL. Persistent SARS-2 infections contribute to long COVID-19. Medical Hypotheses. 149: 110538. PMID 33621843 DOI: 10.1016/j.mehy.2021.110538   
2021 Panda K, Alagarasu K, Parashar D. Oligonucleotide-Based Approaches to Inhibit Dengue Virus Replication. Molecules (Basel, Switzerland). 26. PMID 33670247 DOI: 10.3390/molecules26040956   
2021 Ge P, Ross TM. Evolution and biological significance of A(H1N1) pdm09 influenza virus hemagglutinin glycosylation. Expert Review of Vaccines. PMID 33756084 DOI: 10.1080/14760584.2021.1908135   
2021 Leventhal SS, Wilson D, Feldmann H, Hawman DW. A Look into Genomes: Functions of Non-Structural (NS) Proteins. Viruses. 13. PMID 33670641 DOI: 10.3390/v13020314   
2021 Méndez Y, Pacheco C, Herrera F. Inhibition of defensin A and cecropin A responses to dengue virus 1 infection in Aedes aegypti. Biomedica : Revista Del Instituto Nacional De Salud. 41: 161-167. PMID 33761199 DOI: 10.7705/biomedica.5491   
2021 ÇaĞlayan E, Turan K. Expression profiles of interferon-related genes in cells infected with influenza A viruses or transiently transfected with plasmids encoding viral RNA polymerase. Turkish Journal of Biology = Turk Biyoloji Dergisi. 45: 88-103. PMID 33597825 DOI: 10.3906/biy-2005-73   
2021 Zheng H, Rao AM, Dermadi D, Toh J, Murphy Jones L, Donato M, Liu Y, Su Y, Dai CL, Kornilov SA, Karagiannis M, Marantos T, Hasin-Brumshtein Y, He YD, Giamarellos-Bourboulis EJ, et al. Multi-cohort analysis of host immune response identifies conserved protective and detrimental modules associated with severity across viruses. Immunity. PMID 33765435 DOI: 10.1016/j.immuni.2021.03.002   
2021 Zhao W, Yu J, Jiang F, Wang W, Kang L, Cui F. Coordination between terminal variation of the viral genome and insect microRNAs regulates rice stripe virus replication in insect vectors. Plos Pathogens. 17: e1009424. PMID 33690727 DOI: 10.1371/journal.ppat.1009424   
2021 Adams CR, Blazer VS, Sherry J, Cornman RS, Iwanowicz LR. Phylogeographic Genetic Diversity in the White Sucker Hepatitis B Virus across the Great Lakes Region and Alberta, Canada. Viruses. 13. PMID 33673082 DOI: 10.3390/v13020285   
2021 Vincent F, Sheyn U, Porat Z, Schatz D, Vardi A. Visualizing active viral infection reveals diverse cell fates in synchronized algal bloom demise. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33707211 DOI: 10.1073/pnas.2021586118   
2021 Junjhon J, Panyasu K, Chaiyaloom S, Saipin K, Somasa P, Sangiambut S, Puttikhunt C, Sriburi R, Keelapang P, Ekchariyawat P, Avirutnan P, Hirunpetcharat C, Sittisombut N. Generation and characterization of luciferase-secreting, single-round infectious DENV-2 reporter for functional antibody assays. Journal of Virological Methods. 291: 114119. PMID 33662412 DOI: 10.1016/j.jviromet.2021.114119   
2021 Patiño-Galindo JÁ, Filip I, Rabadan R. Global patterns of recombination across human viruses. Molecular Biology and Evolution. PMID 33585889 DOI: 10.1093/molbev/msab046   
2021 Bakhshandeh B, Jahanafrooz Z, Abbasi A, Goli MB, Sadeghi M, Mottaqi MS, Zamani M. Mutations in SARS-CoV-2; Consequences in structure, function, and pathogenicity of the virus. Microbial Pathogenesis. 104831. PMID 33727169 DOI: 10.1016/j.micpath.2021.104831   
2021 Bakhshandeh B, Jahanafrooz Z, Abbasi A, Goli MB, Sadeghi M, Mottaqi MS, Zamani M. Mutations in SARS-CoV-2; Consequences in structure, function, and pathogenicity of the virus. Microbial Pathogenesis. 104831. PMID 33727169 DOI: 10.1016/j.micpath.2021.104831   
2021 Saksena N, Bonam SR, Miranda-Saksena M. Epigenetic Lens to Visualize the Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2) Infection in COVID-19 Pandemic. Frontiers in Genetics. 12: 581726. PMID 33828579 DOI: 10.3389/fgene.2021.581726   
2021 Martins M, Ramos LFC, Murillo JR, Torres A, de Carvalho SS, Domont GB, de Oliveira DMP, Mesquita RD, Nogueira FCS, Maciel-de-Freitas R, Junqueira M. Comprehensive Quantitative Proteome Analysis of Identifies Proteins and Pathways Involved in and Zika Virus Interference Phenomenon. Frontiers in Physiology. 12: 642237. PMID 33716790 DOI: 10.3389/fphys.2021.642237   
2021 Alexander MR, Brice AM, Jansen van Vuren P, Rootes CL, Tribolet L, Cowled C, Bean AGD, Stewart CR. Ribosome-Profiling Reveals Restricted Post Transcriptional Expression of Antiviral Cytokines and Transcription Factors during SARS-CoV-2 Infection. International Journal of Molecular Sciences. 22. PMID 33806254 DOI: 10.3390/ijms22073392   
2021 Jackson T, Belsham GJ. Picornaviruses: A View from 3A. Viruses. 13. PMID 33799649 DOI: 10.3390/v13030456   
2021 Draganova EB, Heldwein EE. Virus-derived peptide inhibitors of the herpes simplex virus type 1 nuclear egress complex. Scientific Reports. 11: 4206. PMID 33603021 DOI: 10.1038/s41598-021-83402-x   
2021 Lopacinski AB, Sweatt AJ, Smolko CM, Gray-Gaillard E, Borgman CA, Shah M, Janes KA. Modeling the complete kinetics of coxsackievirus B3 reveals human determinants of host-cell feedback. Cell Systems. PMID 33740397 DOI: 10.1016/j.cels.2021.02.004   
2021 Tang L, Wei X, Li T, Chen Y, Dai Z, Lu C, Zheng G. Emerging Perspectives of RNA -methyladenosine (mA) Modification on Immunity and Autoimmune Diseases. Frontiers in Immunology. 12: 630358. PMID 33746967 DOI: 10.3389/fimmu.2021.630358   
2021 Sun ZG, Li ZN, Miao XW, Li S, Zhu HL. Recent Advance in Natural Products with Antiviral Activities. Mini Reviews in Medicinal Chemistry. PMID 33663367 DOI: 10.2174/1389557521666210304110824   
2021 Zhang W, Wang Q, Yang F, Zhu Z, Duan Y, Yang Y, Cao W, Zhang K, Ma J, Liu X, Zheng H. JMJD6 negatively regulates cytosolic RNA induced antiviral signaling by recruiting RNF5 to promote activated IRF3 K48 ubiquitination. Plos Pathogens. 17: e1009366. PMID 33684176 DOI: 10.1371/journal.ppat.1009366   
2021 Zhang I, Hsiao Z, Liu F. Development of Genome Editing Approaches against Herpes Simplex Virus Infections. Viruses. 13. PMID 33671590 DOI: 10.3390/v13020338   
2021 Le Nouën C, McCarty T, Yang L, Brown M, Wimmer E, Collins PL, Buchholz UJ. Rescue of codon-pair deoptimized respiratory syncytial virus by the emergence of genomes with very large internal deletions that complemented replication. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33753491 DOI: 10.1073/pnas.2020969118   
2021 Li X, Gu M, Zheng Q, Gao R, Liu X. Packaging signal of influenza A virus. Virology Journal. 18: 36. PMID 33596956 DOI: 10.1186/s12985-021-01504-4   
2021 Koonin EV, Dolja VV, Krupovic M. The healthy human virome: from virus-host symbiosis to disease. Current Opinion in Virology. 47: 86-94. PMID 33652230 DOI: 10.1016/j.coviro.2021.02.002   
2021 Gonçalves A, Maisonnasse P, Donati F, Albert M, Behillil S, Contreras V, Naninck T, Marlin R, Solas C, Pizzorno A, Lemaitre J, Kahlaoui N, Terrier O, Ho Tsong Fang R, Enouf V, et al. SARS-CoV-2 viral dynamics in non-human primates. Plos Computational Biology. 17: e1008785. PMID 33730053 DOI: 10.1371/journal.pcbi.1008785   
2021 Chen YC. CRISPR based genome editing and removal of human viruses. Progress in Molecular Biology and Translational Science. 179: 93-116. PMID 33785179 DOI: 10.1016/bs.pmbts.2020.12.014   
2021 Islam MS, Khan MA. Computational analysis revealed miRNAs produced by Chikungunya virus target genes associated with antiviral immune responses and cell cycle regulation. Computational Biology and Chemistry. 92: 107462. PMID 33640797 DOI: 10.1016/j.compbiolchem.2021.107462   
2021 Choudhury SKM, Ma X, Abdullah SW, Zheng H. Activation and Inhibition of the NLRP3 Inflammasome by RNA Viruses. Journal of Inflammation Research. 14: 1145-1163. PMID 33814921 DOI: 10.2147/JIR.S295706   
2021 Zhang L, Wu N, Ren Y, Wang X. Insights Into Insect Vector Transmission and Epidemiology of Plant-Infecting Fijiviruses. Frontiers in Microbiology. 12: 628262. PMID 33717017 DOI: 10.3389/fmicb.2021.628262   
2021 Rüeger S, Hammer C, Loetscher A, McLaren PJ, Lawless D, Naret O, Depledge DP, Morfopoulou S, Breuer J, Zdobnov E, Fellay J, . The influence of human genetic variation on Epstein-Barr virus sequence diversity. Scientific Reports. 11: 4586. PMID 33633271 DOI: 10.1038/s41598-021-84070-7   
2021 Li WH, Mou DF, Hsieh CK, Weng SH, Tsai WS, Tsai CW. Vector Transmission of Tomato Yellow Leaf Curl Thailand Virus by the Whitefly : Circulative or Propagative? Insects. 12. PMID 33672688 DOI: 10.3390/insects12020181