Hernán Javier Dopazo, PhD - Publications

Affiliations: 
Bioinformatics and Genomics CIPF. Spain, València, Comunidad Valenciana, Spain 
Area:
Comparative Genomics, Adaptive Evolution
Website:
http://hdopazo.bioinfo.cipf.es/

30 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Padró J, De Panis DN, Luisi P, Dopazo H, Szajnman S, Hasson E, Soto IM. Ortholog genes from cactophilic Drosophila provide insight into human adaptation to hallucinogenic cacti. Scientific Reports. 12: 13180. PMID 35915153 DOI: 10.1038/s41598-022-17118-x  0.357
2021 Latorre-Estivalis JM, Almeida FC, Pontes G, Dopazo H, Barrozo RB, Lorenzo MG. Evolution of the insect PPK gene family. Genome Biology and Evolution. PMID 34390578 DOI: 10.1093/gbe/evab185  0.402
2016 Lüke L, Tourmente M, Dopazo H, Serra F, Roldan ER. Selective constraints on protamine 2 in primates and rodents. Bmc Evolutionary Biology. 16: 21. PMID 26801756 DOI: 10.1186/S12862-016-0588-1  0.622
2015 Santpere G, Carnero-Montoro E, Petit N, Serra F, Hvilsom C, Rambla J, Heredia-Genestar JM, Halligan DL, Dopazo H, Navarro A, Bosch E. Analysis of Five Gene Sets in Chimpanzees Suggests Decoupling between the Action of Selection on Protein-Coding and on Noncoding Elements. Genome Biology and Evolution. 7: 1490-505. PMID 25977458 DOI: 10.1093/Gbe/Evv082  0.652
2013 Mensch J, Serra F, Lavagnino NJ, Dopazo H, Hasson E. Positive selection in nucleoporins challenges constraints on early expressed genes in Drosophila development. Genome Biology and Evolution. 5: 2231-41. PMID 24171912 DOI: 10.1093/Gbe/Evt156  0.677
2013 Serra F, Becher V, Dopazo H. Neutral Theory Predicts the Relative Abundance and Diversity of Genetic Elements in a Broad Array of Eukaryotic Genomes Plos One. 8. PMID 23798991 DOI: 10.1371/Journal.Pone.0063915  0.606
2012 Lavagnino N, Serra F, Arbiza L, Dopazo H, Hasson E. Evolutionary Genomics of Genes Involved in Olfactory Behavior in the Drosophila melanogaster Species Group. Evolutionary Bioinformatics Online. 8: 89-104. PMID 22346339 DOI: 10.4137/Ebo.S8484  0.765
2012 Gonçalves LG, Borges N, Serra F, Fernandes PL, Dopazo H, Santos H. Evolution of the biosynthesis of di-myo-inositol phosphate, a marker of adaptation to hot marine environments. Environmental Microbiology. 14: 691-701. PMID 22026421 DOI: 10.1111/J.1462-2920.2011.02621.X  0.656
2011 Lüke L, Vicens A, Serra F, Luque-Larena JJ, Dopazo H, Roldan ER, Gomendio M. Sexual selection halts the relaxation of protamine 2 among rodents. Plos One. 6: e29247. PMID 22216223 DOI: 10.1371/Journal.Pone.0029247  0.642
2011 Arbiza L, Patricio M, Dopazo H, Posada D. Genome-wide heterogeneity of nucleotide substitution model fit. Genome Biology and Evolution. 3: 896-908. PMID 21824869 DOI: 10.1093/Gbe/Evr080  0.748
2011 Cuenca-Bono B, García-Molinero V, Pascual-García P, Dopazo H, Llopis A, Vilardell J, Rodríguez-Navarro S. SUS1 introns are required for efficient mRNA nuclear export in yeast Nucleic Acids Research. 39: 8599-8611. PMID 21749979 DOI: 10.1093/Nar/Gkr496  0.331
2011 Sánchez R, Serra F, Tárraga J, Medina I, Carbonell J, Pulido L, de María A, Capella-Gutíerrez S, Huerta-Cepas J, Gabaldón T, Dopazo J, Dopazo H. Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing. Nucleic Acids Research. 39: W470-4. PMID 21646336 DOI: 10.1093/Nar/Gkr408  0.613
2011 Martín-Trillo M, Grandío EG, Serra F, Marcel F, Rodríguez-Buey ML, Schmitz G, Theres K, Bendahmane A, Dopazo H, Cubas P. Role of tomato BRANCHED1-like genes in the control of shoot branching. The Plant Journal : For Cell and Molecular Biology. 67: 701-14. PMID 21554455 DOI: 10.1111/J.1365-313X.2011.04629.X  0.683
2011 Serra F, Arbiza L, Dopazo J, Dopazo H. Natural selection on functional modules, a genome-wide analysis. Plos Computational Biology. 7: e1001093. PMID 21390268 DOI: 10.1371/Journal.Pcbi.1001093  0.793
2011 Marigorta UM, Lao O, Casals F, Calafell F, Morcillo-Suárez C, Faria R, Bosch E, Serra F, Bertranpetit J, Dopazo H, Navarro A. Recent human evolution has shaped geographical differences in susceptibility to disease. Bmc Genomics. 12: 55. PMID 21261943 DOI: 10.1186/1471-2164-12-55  0.626
2009 Martin-Coello J, Dopazo H, Arbiza L, Ausió J, Roldan ERS, Gomendio M. Sexual selection drives weak positive selection in protamine genes and high promoter divergence, enhancing sperm competitiveness Proceedings of the Royal Society B: Biological Sciences. 276: 2427-2436. PMID 19364735 DOI: 10.1098/Rspb.2009.0257  0.762
2008 Capriotti E, Arbiza L, Casadio R, Dopazo J, Dopazo H, Marti-Renom MA. Use of estimated evolutionary strength at the codon level improves the prediction of disease-related protein mutations in humans Human Mutation. 29: 198-204. PMID 17935148 DOI: 10.1002/Humu.20628  0.738
2007 Rico D, Vaquerizas JM, Dopazo H, Boscá L. Identification of conserved domains in the promoter regions of nitric oxide synthase 2: implications for the species-specific transcription and evolutionary differences. Bmc Genomics. 8: 271. PMID 17686182 DOI: 10.1186/1471-2164-8-271  0.391
2007 Huerta-Cepas J, Dopazo H, Dopazo J, Gabaldón T. The human phylome. Genome Biology. 8: R109. PMID 17567924 DOI: 10.1186/Gb-2007-8-6-R109  0.445
2007 Tárraga J, Medina I, Arbiza L, Huerta-Cepas J, Gabaldón T, Dopazo J, Dopazo H. Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics. Nucleic Acids Research. 35: W38-42. PMID 17452346 DOI: 10.1093/Nar/Gkm224  0.755
2007 Al-Shahrour F, Arbiza L, Dopazo H, Huerta-Cepas J, Mínguez P, Montaner D, Dopazo J. From genes to functional classes in the study of biological systems. Bmc Bioinformatics. 8: 114. PMID 17407596 DOI: 10.1186/1471-2105-8-114  0.759
2006 Conde L, Vaquerizas JM, Dopazo H, Arbiza L, Reumers J, Rousseau F, Schymkowitz J, Dopazo J. PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes. Nucleic Acids Research. 34: W621-5. PMID 16845085 DOI: 10.1093/Nar/Gkl071  0.72
2006 Arbiza L, Dopazo J, Dopazo H. Positive selection, relaxation, and acceleration in the evolution of the human and chimp genome Plos Computational Biology. 2: 288-300. PMID 16683019 DOI: 10.1371/Journal.Pcbi.0020038  0.787
2006 Arbiza L, Duchi S, Montaner D, Burguet J, Pantoja-Uceda D, Pineda-Lucena A, Dopazo J, Dopazo H. Selective Pressures at a Codon-level Predict Deleterious Mutations in Human Disease Genes Journal of Molecular Biology. 358: 1390-1404. PMID 16584746 DOI: 10.1016/J.Jmb.2006.02.067  0.77
2005 Dopazo H, Dopazo J. Genome-scale evidence of the nematode-arthropod clade Genome Biology. 6: R41. PMID 15892869 DOI: 10.1186/Gb-2005-6-5-R41  0.431
2005 Arbiza L, Dopazo J, Dopazo HJ. Differentiating Positive Selection from Acceleration and Relaxation in Human and Chimp Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.0020038.Eor  0.726
2004 Dopazo H, Santoyo J, Dopazo J. Phylogenomics and the number of characters required for obtaining an accurate phylogeny of eukaryote model species Bioinformatics. 20: i116-i121. PMID 15262789 DOI: 10.1093/bioinformatics/bth902  0.315
1998 Dopazo H, Boto L, Alberch P. Mitochondrial DNA variability in viviparous and ovoviviparous populations of the urodele Salamandra salamandra Journal of Evolutionary Biology. 11: 365-378. DOI: 10.1046/J.1420-9101.1998.11030365.X  0.318
1996 Alcobendas M, Dopazo H, Alberch P. Geographic variation in allozymes of populations of Salamandra salamandra (Amphibia: Urodela) exhibiting distinct reproductive modes Journal of Evolutionary Biology. 9: 83-102. DOI: 10.1046/J.1420-9101.1996.9010083.X  0.318
1992 Massarini A, Dopazo HJ, Bouzat JL, Hasson E, Reig OA. The population genetic structure of Ctenomys porteousi (Rodentia: Octodontidae) Biochemical Systematics and Ecology. 20: 723-734. DOI: 10.1016/0305-1978(92)90031-8  0.693
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