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Peter J. Unrau - Publications

Affiliations: 
Simon Fraser University, Burnaby, British Columbia, Canada 
Area:
Molecular Biology, Biochemistry
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64 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Lu X, Passalacqua LFM, Nodwell M, Kong KYS, Caballero-García G, Dolgosheina EV, Ferré-D'Amaré AR, Britton R, Unrau PJ. Symmetry breaking of fluorophore binding to a G-quadruplex generates an RNA aptamer with picomolar KD. Nucleic Acids Research. PMID 38945550 DOI: 10.1093/nar/gkae493  0.351
2024 Abdolahzadeh A, Ang QR, Caine JR, Panchapakesan SSS, Thio S, Cojocaru R, Unrau P. Turn-on RNA Mango Beacons for Trans-Acting Fluorogenic Nucleic Acid Detection. Rna (New York, N.Y.). PMID 38282417 DOI: 10.1261/rna.079833.123  0.484
2023 Lu X, Kong KYS, Unrau PJ. Harmonizing the growing fluorogenic RNA aptamer toolbox for RNA detection and imaging. Chemical Society Reviews. 52: 4071-4098. PMID 37278064 DOI: 10.1039/d3cs00030c  0.566
2022 Bonar CD, Han J, Wang R, Panchapakesan SSS, Unrau PJ. 6S RNA complexed to RNA polymerase maintains product RNA synthesis at low cellular ATP levels by initiation with non-canonical initiator nucleotides. Rna (New York, N.Y.). PMID 36198425 DOI: 10.1261/rna.079356.122  0.581
2022 Cawte AD, Iino H, Unrau PJ, Rueda DS. Single-Molecule RNA Imaging Using Mango II Arrays. Methods in Molecular Biology (Clifton, N.J.). 2404: 267-280. PMID 34694614 DOI: 10.1007/978-1-0716-1851-6_14  0.533
2021 Cojocaru R, Unrau PJ. Processive RNA polymerization and promoter recognition in an RNA World. Science (New York, N.Y.). 371: 1225-1232. PMID 33737482 DOI: 10.1126/science.abd9191  0.577
2021 Kong KYS, Jeng SCY, Rayyan B, Unrau PJ. RNA Peach and Mango: Orthogonal two-color fluorogenic aptamers distinguish nearly identical ligands. Rna (New York, N.Y.). PMID 33674421 DOI: 10.1261/rna.078493.120  0.383
2020 Jeng SS, Trachman RJ, Weissenboek F, Troung L, Link K, Jepsen MB, Knutson J, Andersen E, Ferré-D'Amaré AR, Unrau PJ. Fluorogenic aptamers resolve the flexibility of RNA junctions using orientation-dependent FRET. Rna (New York, N.Y.). PMID 33376189 DOI: 10.1261/rna.078220.120  0.457
2020 Trachman RJ, Cojocaru R, Wu D, Piszczek G, Ryckelynck M, Unrau PJ, Ferré-D'Amaré AR. Structure-Guided Engineering of the Homodimeric Mango-IV Fluorescence Turn-on Aptamer Yields an RNA FRET Pair. Structure (London, England : 1993). PMID 32386573 DOI: 10.1016/J.Str.2020.04.007  0.539
2020 Cawte AD, Unrau PJ, Rueda DS. Live cell imaging of single RNA molecules with fluorogenic Mango II arrays. Nature Communications. 11: 1283. PMID 32152311 DOI: 10.1038/S41467-020-14932-7  0.572
2019 Abdolahzadeh A, Dolgosheina EV, Unrau PJ. RNA detection with high specificity and sensitivity using nested fluorogenic Mango NASBA. Rna. 25: 1806-1813. PMID 31551299 DOI: 10.1261/Rna.072629.119  0.568
2019 Yaseen IM, Ang QR, Unrau PJ. Fluorescent Visualization of Mango-tagged RNA in Polyacrylamide Gels via a Poststaining Method. Journal of Visualized Experiments : Jove. PMID 31282891 DOI: 10.3791/59112  0.633
2019 Trachman RJ, Autour A, Jeng SCY, Abdolahzadeh A, Andreoni A, Cojocaru R, Garipov R, Dolgosheina EV, Knutson JR, Ryckelynck M, Unrau PJ, Ferré-D'Amaré AR. Structure and functional reselection of the Mango-III fluorogenic RNA aptamer. Nature Chemical Biology. 15: 472-479. PMID 30992561 DOI: 10.2210/Pdb6E8S/Pdb  0.501
2018 Panchapakesan SSS, Jeng SCY, Unrau PJ. Purification of RNA Mango Tagged Native RNA-protein Complexes from Cellular Extracts Using TO1-Desthiobiotin Fluorophore Ligand. Bio-Protocol. 8: e2799. PMID 34286019 DOI: 10.21769/BioProtoc.2799  0.546
2018 Trachman R, Abdolahzadeh A, Andreoni A, Cojocaru R, Knutson JR, Ryckelynck M, Unrau PJ, Ferré-D'Amaré A. Crystal structures of the Mango-II RNA aptamer reveal heterogeneous fluorophore binding and guide engineering of variants with improved selectivity and brightness. Biochemistry. PMID 29768001 DOI: 10.1021/Acs.Biochem.8B00399  0.567
2018 Gill EE, Chan LS, Winsor GL, Dobson N, Lo R, Ho Sui SJ, Dhillon BK, Taylor PK, Shrestha R, Spencer C, Hancock REW, Unrau PJ, Brinkman FSL. High-throughput detection of RNA processing in bacteria. Bmc Genomics. 19: 223. PMID 29587634 DOI: 10.1186/S12864-018-4538-8  0.619
2018 Autour A, C Y Jeng S, D Cawte A, Abdolahzadeh A, Galli A, Panchapakesan SSS, Rueda D, Ryckelynck M, Unrau PJ. Fluorogenic RNA Mango aptamers for imaging small non-coding RNAs in mammalian cells. Nature Communications. 9: 656. PMID 29440634 DOI: 10.1038/S41467-018-02993-8  0.6
2018 Cawte A, Jeng S, Autour A, Ryckelynck M, Unrau P, Rueda D. Cellular Imaging of Small RNAs using Fluorescent RNA-Mango Aptamers Biophysical Journal. 114: 215a-216a. DOI: 10.1016/J.Bpj.2017.11.1203  0.614
2017 Cojocaru R, Unrau PJ. Transitioning to DNA genomes in an RNA world. Elife. 6. PMID 29091027 DOI: 10.7554/Elife.32330  0.543
2017 Panchapakesan SS, Ferguson ML, Hayden EJ, Chen X, Hoskins AA, Unrau PJ. Ribonucleoprotein Purification and Characterization using RNA Mango. Rna (New York, N.Y.). PMID 28747322 DOI: 10.1261/Rna.062166.117  0.634
2017 Trachman RJ, Demeshkina NA, Lau MWL, Panchapakesan SSS, Jeng SCY, Unrau PJ, Ferré-D'Amaré AR. Structural basis for high-affinity fluorophore binding and activation by RNA Mango. Nature Chemical Biology. PMID 28553947 DOI: 10.1038/Nchembio.2392  0.599
2017 Sundar Panchapakesan SS, Hayden EJ, Unrau P, Ferguson ML. In Vitro Binding of 6S RNA Mango to RNA Polymerase by Two Photon Fluorescence Cross Correlation Spectroscopy Biophysical Journal. 112: 151a. DOI: 10.1016/J.Bpj.2016.11.826  0.634
2017 Cawte A, Jeng S, Unrau P, Rueda D. Live Cell Imaging of Genomic Loci using Fluorescent RNA Aptamers Biophysical Journal. 112: 69a. DOI: 10.1016/J.Bpj.2016.11.416  0.535
2016 Jeng SC, Chan HH, Booy EP, McKenna SA, Unrau PJ. Fluorophore ligand binding and complex stabilization of the RNA Mango and RNA Spinach aptamers. Rna (New York, N.Y.). PMID 27777365 DOI: 10.1261/Rna.056226.116  0.629
2016 Dolgosheina EV, Unrau PJ. Fluorophore-binding RNA aptamers and their applications. Wiley Interdisciplinary Reviews. Rna. 7: 843-851. PMID 27501452 DOI: 10.1002/wrna.1383  0.574
2016 Dolgosheina EV, Unrau PJ. Fluorophore-binding RNA aptamers and their applications Wiley Interdisciplinary Reviews: Rna. 7: 843-851. DOI: 10.1002/Wrna.1383  0.627
2015 Unrau P. RNA rules! Rna (New York, N.Y.). 21: 749-50. PMID 25780220 DOI: 10.1261/rna.050500.115  0.565
2015 Lambertz U, Oviedo Ovando ME, Vasconcelos EJ, Unrau PJ, Myler PJ, Reiner NE. Small RNAs derived from tRNAs and rRNAs are highly enriched in exosomes from both old and new world Leishmania providing evidence for conserved exosomal RNA Packaging. Bmc Genomics. 16: 151. PMID 25764986 DOI: 10.1186/S12864-015-1260-7  0.629
2015 Martin LL, Unrau PJ, Müller UF. RNA synthesis by in vitro selected ribozymes for recreating an RNA world. Life (Basel, Switzerland). 5: 247-68. PMID 25610978 DOI: 10.3390/Life5010247  0.631
2015 Panchapakesan SS, Jeng SC, Unrau PJ. RNA complex purification using high-affinity fluorescent RNA aptamer tags. Annals of the New York Academy of Sciences. 1341: 149-55. PMID 25585661 DOI: 10.1111/Nyas.12663  0.641
2014 Dolgosheina EV, Jeng SC, Panchapakesan SS, Cojocaru R, Chen PS, Wilson PD, Hawkins N, Wiggins PA, Unrau PJ. RNA mango aptamer-fluorophore: a bright, high-affinity complex for RNA labeling and tracking. Acs Chemical Biology. 9: 2412-20. PMID 25101481 DOI: 10.1021/Cb500499X  0.64
2014 Oviedo Ovando M, Shephard L, Unrau PJ. In vitro characterization of 6S RNA release-defective mutants uncovers features of pRNA-dependent release from RNA polymerase in E. coli. Rna (New York, N.Y.). 20: 670-80. PMID 24681966 DOI: 10.1261/Rna.036343.112  0.563
2012 Panchapakesan SS, Unrau PJ. E. coli 6S RNA release from RNA polymerase requires σ70 ejection by scrunching and is orchestrated by a conserved RNA hairpin. Rna (New York, N.Y.). 18: 2251-9. PMID 23118417 DOI: 10.1261/Rna.034785.112  0.584
2012 Ebhardt HA, Ovando MO, Unrau PJ. Isolation and biochemical analysis of plant small RNAs. Methods in Molecular Biology (Clifton, N.J.). 894: 223-39. PMID 22678583 DOI: 10.1007/978-1-61779-882-5_15  0.639
2011 Wang QS, Cheng LK, Unrau PJ. Characterization of the B6.61 polymerase ribozyme accessory domain. Rna (New York, N.Y.). 17: 469-77. PMID 21224380 DOI: 10.1261/Rna.2495011  0.453
2010 Cheng LK, Unrau PJ. Closing the circle: replicating RNA with RNA. Cold Spring Harbor Perspectives in Biology. 2: a002204. PMID 20554706 DOI: 10.1101/Cshperspect.A002204  0.396
2010 Shephard L, Dobson N, Unrau PJ. Binding and release of the 6S transcriptional control RNA. Rna (New York, N.Y.). 16: 885-92. PMID 20354151 DOI: 10.1261/Rna.2036210  0.617
2010 Wang Q, Unrau PJ. Evolving an Understanding of RNA Function by In Vitro Approaches The Chemical Biology of Nucleic Acids. 355-376. DOI: 10.1002/9780470664001.ch17  0.502
2009 Lau MW, Unrau PJ. A promiscuous ribozyme promotes nucleotide synthesis in addition to ribose chemistry. Chemistry & Biology. 16: 815-25. PMID 19716472 DOI: 10.1016/J.Chembiol.2009.07.005  0.439
2009 Salari R, Aksay C, Karakoc E, Unrau PJ, Hajirasouliha I, Sahinalp SC. smyRNA: a novel Ab initio ncRNA gene finder. Plos One. 4: e5433. PMID 19415115 DOI: 10.1371/Journal.Pone.0005433  0.414
2009 Ebhardt HA, Unrau PJ. Characterizing multiple exogenous and endogenous small RNA populations in parallel with subfemtomolar sensitivity using a streptavidin gel-shift assay. Rna (New York, N.Y.). 15: 724-31. PMID 19237462 DOI: 10.1261/Rna.1235109  0.605
2008 Wang L, Smith NA, Zhang L, Dennis ES, Waterhouse PM, Unrau PJ, Wang MB. Synthesis of complementary RNA by RNA-dependent RNA polymerases in plant extracts is independent of an RNA primer. Functional Plant Biology : Fpb. 35: 1091-1099. PMID 32688857 DOI: 10.1071/Fp08118  0.587
2008 Dolgosheina EV, Morin RD, Aksay G, Sahinalp SC, Magrini V, Mardis ER, Mattsson J, Unrau PJ. Conifers have a unique small RNA silencing signature Rna. 14: 1508-1515. PMID 18566193 DOI: 10.1261/Rna.1052008  0.63
2008 Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ. Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa. Genome Research. 18: 571-84. PMID 18323537 DOI: 10.1101/Gr.6897308  0.613
2008 Wang L, Smith NA, Zhang L, Dennis ES, Waterhouse PM, Unrau PJ, Wang MB. Synthesis of complementary RNA by RNA-dependent RNA polymerases in plant extracts is independent of an RNA primer Functional Plant Biology. 35: 1091-1099. DOI: 10.1071/FP08118  0.526
2007 Zaher HS, Unrau PJ. Selection of an improved RNA polymerase ribozyme with superior extension and fidelity. Rna (New York, N.Y.). 13: 1017-26. PMID 17586759 DOI: 10.1261/Rna.548807  0.599
2006 Zaher HS, Unrau PJ. A general RNA-capping ribozyme retains stereochemistry during cap exchange. Journal of the American Chemical Society. 128: 13894-900. PMID 17044717 DOI: 10.1021/Ja0639822  0.501
2006 Zaher HS, Watkins RA, Unrau PJ. Two independently selected capping ribozymes share similar substrate requirements. Rna (New York, N.Y.). 12: 1949-58. PMID 16973893 DOI: 10.1261/Rna.131306  0.356
2006 Ebhardt HA, Wiese KC, Unrau PJ. Ebbie: automated analysis and storage of small RNA cloning data using a dynamic web server. Bmc Bioinformatics. 7: 185. PMID 16584563 DOI: 10.1186/1471-2105-7-185  0.418
2005 Ebhardt HA, Thi EP, Wang MB, Unrau PJ. Extensive 3' modification of plant small RNAs is modulated by helper component-proteinase expression. Proceedings of the National Academy of Sciences of the United States of America. 102: 13398-403. PMID 16157869 DOI: 10.1073/Pnas.0506597102  0.563
2005 Lehman N, Unrau PJ. Recombination during in vitro evolution. Journal of Molecular Evolution. 61: 245-52. PMID 16007485 DOI: 10.1007/S00239-004-0373-4  0.3
2005 Wang QS, Unrau PJ. Ribozyme motif structure mapped using random recombination and selection. Rna (New York, N.Y.). 11: 404-11. PMID 15703441 DOI: 10.1261/Rna.7238705  0.523
2005 Zaher HS, Unrau PJ. Nucleic acid library construction using synthetic DNA constructs. Methods in Molecular Biology (Clifton, N.J.). 288: 359-78. PMID 15333915 DOI: 10.1385/1-59259-823-4:359  0.336
2004 Lau MW, Cadieux KE, Unrau PJ. Isolation of fast purine nucleotide synthase ribozymes. Journal of the American Chemical Society. 126: 15686-93. PMID 15571390 DOI: 10.1021/Ja045387A  0.47
2004 Zaher HS, Unrau PJ. T7 RNA polymerase mediates fast promoter-independent extension of unstable nucleic acid complexes. Biochemistry. 43: 7873-80. PMID 15196031 DOI: 10.1021/Bi0497300  0.578
2003 Unrau PJ, Bartel DP. An oxocarbenium-ion intermediate of a ribozyme reaction indicated by kinetic isotope effects. Proceedings of the National Academy of Sciences of the United States of America. 100: 15393-7. PMID 14668444 DOI: 10.1073/Pnas.2433147100  0.376
2003 Chapple KE, Bartel DP, Unrau PJ. Combinatorial minimization and secondary structure determination of a nucleotide synthase ribozyme. Rna (New York, N.Y.). 9: 1208-20. PMID 13130135 DOI: 10.1261/Rna.5500603  0.465
2002 Wang QS, Unrau PJ. Purification of histidine-tagged T4 RNA ligase from E. coli. Biotechniques. 33: 1256-60. PMID 12503310 DOI: 10.2144/02336St03  0.498
2001 Johnston WK, Unrau PJ, Lawrence MS, Glasner ME, Bartel DP. RNA-catalyzed RNA polymerization: Accurate and general RNA-templated primer extension Science. 292: 1319-1325. PMID 11358999 DOI: 10.1126/Science.1060786  0.656
1999 Bartel DP, Unrau PJ. Constructing an RNA world Trends in Cell Biology. 9. PMID 10611672 DOI: 10.1016/S0962-8924(99)01669-4  0.572
1999 Unrau PJ, Bartel DP, Koch G, Dandekar T. RNA-catalysed nucleotide synthesis Chemtracts. 12: 938-943. DOI: 10.1038/26193  0.636
1999 Bartel DP, Unrau PJ. Constructing an RNA world Trends in Genetics. 15: M9-M13. DOI: 10.1016/S0962-8924(99)01669-4  0.608
1999 Unrau PJ, Bartel DP, Koch G, Dandekar T. RNA-catalysed nucleotide synthesis Chemtracts. 12: 938-943.  0.565
1997 Sabeti PC, Unrau PJ, Bartel DP. Accessing rare activities from random RNA sequences: The importance of the length of molecules in the starting pool Chemistry and Biology. 4: 767-774. PMID 9375255 DOI: 10.1016/S1074-5521(97)90315-X  0.379
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