Josh Cuperus, Ph.D. - Publications

Affiliations: 
2011 Oregon State University, Corvallis, OR 
Area:
Molecular Biology, Genetics, Botany Biology

14 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Alexandre CM, Urton JR, Jean-Baptiste K, Huddleston JL, Dorrity MW, Cuperus JT, Sullivan AM, Bemm F, Jolic D, Arsovski AA, Thompson A, Nemhauser JL, Fields S, Weigel D, Bubb KL, et al. Complex relationships between chromatin accessibility, sequence divergence, and gene expression in A. thaliana. Molecular Biology and Evolution. PMID 29272536 DOI: 10.1093/Molbev/Msx326  0.56
2015 Cuperus JT, Lo RS, Shumaker L, Proctor J, Fields S. A tetO Toolkit To Alter Expression of Genes in Saccharomyces cerevisiae. Acs Synthetic Biology. 4: 842-52. PMID 25742460 DOI: 10.1021/Sb500363Y  0.92
2014 Carbonell A, Takeda A, Fahlgren N, Johnson SC, Cuperus JT, Carrington JC. New generation of artificial MicroRNA and synthetic trans-acting small interfering RNA vectors for efficient gene silencing in Arabidopsis. Plant Physiology. 165: 15-29. PMID 24647477 DOI: 10.1104/Pp.113.234989  0.92
2013 Fahlgren N, Bollmann SR, Kasschau KD, Cuperus JT, Press CM, Sullivan CM, Chapman EJ, Hoyer JS, Gilbert KB, Grünwald NJ, Carrington JC. Phytophthora have distinct endogenous small RNA populations that include short interfering and microRNAs. Plos One. 8: e77181. PMID 24204767 DOI: 10.1371/Journal.Pone.0077181  0.92
2012 Carbonell A, Fahlgren N, Garcia-Ruiz H, Gilbert KB, Montgomery TA, Nguyen T, Cuperus JT, Carrington JC. Functional analysis of three Arabidopsis argonautes using slicer-defective mutants Plant Cell. 24: 3613-3629. PMID 23023169 DOI: 10.1105/Tpc.112.099945  0.92
2011 Cuperus JT, Fahlgren N, Carrington JC. Evolution and functional diversification of MIRNA genes. The Plant Cell. 23: 431-42. PMID 21317375 DOI: 10.1105/Tpc.110.082784  0.92
2011 Greenberg MV, Ausin I, Chan SW, Cokus SJ, Cuperus JT, Feng S, Law JA, Chu C, Pellegrini M, Carrington JC, Jacobsen SE. Identification of genes required for de novo DNA methylation in Arabidopsis. Epigenetics. 6: 344-54. PMID 21150311 DOI: 10.4161/Epi.6.3.14242  0.92
2010 Cuperus JT, Carbonell A, Fahlgren N, Garcia-Ruiz H, Burke RT, Takeda A, Sullivan CM, Gilbert SD, Montgomery TA, Carrington JC. Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis Nature Structural and Molecular Biology. 17: 997-1003. PMID 20562854 DOI: 10.1038/Nsmb.1866  0.92
2010 Cuperus JT, Montgomery TA, Fahlgren N, Burke RT, Townsend T, Sullivan CM, Carrington JC. Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing. Proceedings of the National Academy of Sciences of the United States of America. 107: 466-71. PMID 20018656 DOI: 10.1073/Pnas.0913203107  0.92
2009 Rubio-Somoza I, Cuperus JT, Weigel D, Carrington JC. Regulation and functional specialization of small RNA-target nodes during plant development. Current Opinion in Plant Biology. 12: 622-7. PMID 19699140 DOI: 10.1016/J.Pbi.2009.07.003  0.92
2008 Bhattacharjee S, Lee LY, Oltmanns H, Cao H, Veena, Cuperus J, Gelvin SB. IMPa-4, an Arabidopsis importin alpha isoform, is preferentially involved in agrobacterium-mediated plant transformation. The Plant Cell. 20: 2661-80. PMID 18836040 DOI: 10.1105/Tpc.108.060467  0.92
2008 Montgomery TA, Howell MD, Cuperus JT, Li D, Hansen JE, Alexander AL, Chapman EJ, Fahlgren N, Allen E, Carrington JC. Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formation. Cell. 133: 128-41. PMID 18342362 DOI: 10.1016/J.Cell.2008.02.033  0.92
2004 Hodges LD, Cuperus J, Ream W. Agrobacterium rhizogenes GALLS protein substitutes for Agrobacterium tumefaciens single-stranded DNA-binding protein VirE2. Journal of Bacteriology. 186: 3065-77. PMID 15126468 DOI: 10.1128/Jb.186.10.3065-3077.2004  0.92
2003 Lee H, Humann JL, Pitrak JS, Cuperus JT, Parks TD, Whistler CA, Mok MC, Ream LW. Translation start sequences affect the efficiency of silencing of Agrobacterium tumefaciens T-DNA oncogenes. Plant Physiology. 133: 966-77. PMID 12972655 DOI: 10.1104/Pp.103.026534  0.92
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