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Megan A. Supple, Ph.D. - Publications

Affiliations: 
2014 North Carolina State University, Raleigh, NC 
Area:
Bioinformatics Biology, Genetics, Entomology Biology
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27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Supple MA, Escalona M, Adkins J, Buchalski MR, Alexandre N, Sahasrabudhe RM, Nguyen O, Sacco S, Fairbairn C, Beraut E, Seligmann W, Green RE, Meredith E, Shapiro B. A genome assembly of the American black bear, Ursus americanus, from California. The Journal of Heredity. PMID 39008331 DOI: 10.1093/jhered/esae037  0.429
2023 Kaplow IM, Lawler AJ, Schäffer DE, Srinivasan C, Sestili HH, Wirthlin ME, Phan BN, Prasad K, Brown AR, Zhang X, Foley K, Genereux DP, Karlsson EK, Lindblad-Toh K, Meyer WK, ... ... Supple MA, et al. Relating enhancer genetic variation across mammals to complex phenotypes using machine learning. Science (New York, N.Y.). 380: eabm7993. PMID 37104615 DOI: 10.1126/science.abm7993  0.435
2023 Sullivan PF, Meadows JRS, Gazal S, Phan BN, Li X, Genereux DP, Dong MX, Bianchi M, Andrews G, Sakthikumar S, Nordin J, Roy A, Christmas MJ, Marinescu VD, Wang C, ... ... Supple MA, et al. Leveraging base-pair mammalian constraint to understand genetic variation and human disease. Science (New York, N.Y.). 380: eabn2937. PMID 37104612 DOI: 10.1126/science.abn2937  0.452
2023 Keough KC, Whalen S, Inoue F, Przytycki PF, Fair T, Deng C, Steyert M, Ryu H, Lindblad-Toh K, Karlsson E, Nowakowski T, Ahituv N, Pollen A, Pollard KS, Andrews G, ... ... Supple MA, et al. Three-dimensional genome rewiring in loci with human accelerated regions. Science (New York, N.Y.). 380: eabm1696. PMID 37104607 DOI: 10.1126/science.abm1696  0.493
2023 Kirilenko BM, Munegowda C, Osipova E, Jebb D, Sharma V, Blumer M, Morales AE, Ahmed AW, Kontopoulos DG, Hilgers L, Lindblad-Toh K, Karlsson EK, Hiller M, Andrews G, Armstrong JC, ... ... Supple MA, et al. Integrating gene annotation with orthology inference at scale. Science (New York, N.Y.). 380: eabn3107. PMID 37104600 DOI: 10.1126/science.abn3107  0.516
2023 Christmas MJ, Kaplow IM, Genereux DP, Dong MX, Hughes GM, Li X, Sullivan PF, Hindle AG, Andrews G, Armstrong JC, Bianchi M, Breit AM, Diekhans M, Fanter C, Foley NM, ... ... Supple MA, ... ... Supple MA, et al. Evolutionary constraint and innovation across hundreds of placental mammals. Science (New York, N.Y.). 380: eabn3943. PMID 37104599 DOI: 10.1126/science.abn3943  0.534
2023 Xue JR, Mackay-Smith A, Mouri K, Garcia MF, Dong MX, Akers JF, Noble M, Li X, Lindblad-Toh K, Karlsson EK, Noonan JP, Capellini TD, Brennand KJ, Tewhey R, Sabeti PC, ... ... Supple MA, et al. The functional and evolutionary impacts of human-specific deletions in conserved elements. Science (New York, N.Y.). 380: eabn2253. PMID 37104592 DOI: 10.1126/science.abn2253  0.354
2023 Moon KL, Huson HJ, Morrill K, Wang MS, Li X, Srikanth K, Lindblad-Toh K, Svenson GJ, Karlsson EK, Shapiro B, Andrews G, Armstrong JC, Bianchi M, Birren BW, Bredemeyer KR, ... ... Supple MA, et al. ​Comparative genomics of Balto, a famous historic dog, captures lost diversity of 1920s sled dogs. Science (New York, N.Y.). 380: eabn5887. PMID 37104591 DOI: 10.1126/science.abn5887  0.397
2023 Foley NM, Mason VC, Harris AJ, Bredemeyer KR, Damas J, Lewin HA, Eizirik E, Gatesy J, Karlsson EK, Lindblad-Toh K, Springer MS, Murphy WJ, Andrews G, Armstrong JC, Bianchi M, ... ... Supple MA, et al. A genomic timescale for placental mammal evolution. Science (New York, N.Y.). 380: eabl8189. PMID 37104581 DOI: 10.1126/science.abl8189  0.577
2023 Andrews G, Fan K, Pratt HE, Phalke N, Karlsson EK, Lindblad-Toh K, Gazal S, Moore JE, Weng Z, Andrews G, Armstrong JC, Bianchi M, Birren BW, Bredemeyer KR, Breit AM, ... ... Supple MA, et al. Mammalian evolution of human cis-regulatory elements and transcription factor binding sites. Science (New York, N.Y.). 380: eabn7930. PMID 37104580 DOI: 10.1126/science.abn7930  0.409
2023 Wilder AP, Supple MA, Subramanian A, Mudide A, Swofford R, Serres-Armero A, Steiner C, Koepfli KP, Genereux DP, Karlsson EK, Lindblad-Toh K, Marques-Bonet T, Munoz Fuentes V, Foley K, Meyer WK, ... ... Supple MA, et al. The contribution of historical processes to contemporary extinction risk in placental mammals. Science (New York, N.Y.). 380: eabn5856. PMID 37104572 DOI: 10.1126/science.abn5856  0.453
2023 Osmanski AB, Paulat NS, Korstian J, Grimshaw JR, Halsey M, Sullivan KAM, Moreno-Santillán DD, Crookshanks C, Roberts J, Garcia C, Johnson MG, Densmore LD, Stevens RD, Rosen J, Storer JM, ... ... Supple MA, et al. Insights into mammalian TE diversity through the curation of 248 genome assemblies. Science (New York, N.Y.). 380: eabn1430. PMID 37104570 DOI: 10.1126/science.abn1430  0.484
2022 Wang MS, Murray GGR, Mann D, Groves P, Vershinina AO, Supple MA, Kapp JD, Corbett-Detig R, Crump SE, Stirling I, Laidre KL, Kunz M, Dalén L, Green RE, Shapiro B. A polar bear paleogenome reveals extensive ancient gene flow from polar bears into brown bears. Nature Ecology & Evolution. PMID 35711062 DOI: 10.1038/s41559-022-01753-8  0.354
2020 Wang MS, Thakur M, Peng MS, Jiang Y, Frantz LAF, Li M, Zhang JJ, Wang S, Peters J, Otecko NO, Suwannapoom C, Guo X, Zheng ZQ, Esmailizadeh A, Hirimuthugoda NY, ... ... Supple M, et al. Author Correction: 863 genomes reveal the origin and domestication of chicken. Cell Research. PMID 32690900 DOI: 10.1038/S41422-020-0380-Z  0.378
2020 Wang MS, Thakur M, Peng MS, Jiang Y, Frantz LAF, Li M, Zhang JJ, Wang S, Peters J, Otecko NO, Suwannapoom C, Guo X, Zheng ZQ, Esmailizadeh A, Hirimuthugoda NY, ... ... Supple M, et al. 863 genomes reveal the origin and domestication of chicken. Cell Research. PMID 32581344 DOI: 10.1038/S41422-020-0349-Y  0.509
2019 Saremi NF, Supple MA, Byrne A, Cahill JA, Coutinho LL, Dalén L, Figueiró HV, Johnson WE, Milne HJ, O'Brien SJ, O'Connell B, Onorato DP, Riley SPD, Sikich JA, Stahler DR, et al. Author Correction: Puma genomes from North and South America provide insights into the genomic consequences of inbreeding. Nature Communications. 10: 5276. PMID 31754100 DOI: 10.1038/S41467-019-13096-3  0.478
2019 Saremi NF, Supple MA, Byrne A, Cahill JA, Coutinho LL, Dalén L, Figueiró HV, Johnson WE, Milne HJ, O'Brien SJ, O'Connell B, Onorato DP, Riley SPD, Sikich JA, Stahler DR, et al. Puma genomes from North and South America provide insights into the genomic consequences of inbreeding. Nature Communications. 10: 4769. PMID 31628318 DOI: 10.1038/S41467-019-12741-1  0.499
2018 Supple MA, Shapiro B. Conservation of biodiversity in the genomics era. Genome Biology. 19: 131. PMID 30205843 DOI: 10.1186/s13059-018-1520-3  0.558
2018 Supple MA, Bragg JG, Broadhurst LM, Nicotra AB, Byrne M, Andrew RL, Widdup A, Aitken NC, Borevitz JO. Landscape genomic prediction for restoration of a foundation species under climate change. Elife. 7. PMID 29685183 DOI: 10.7554/Elife.31835  0.456
2017 Van Belleghem SM, Rastas P, Papanicolaou A, Martin SH, Arias CF, Supple MA, Hanly JJ, Mallet J, Lewis JJ, Hines HM, Ruiz M, Salazar C, Linares M, Moreira GRP, Jiggins CD, et al. Complex modular architecture around a simple toolkit of wing pattern genes. Nature Ecology & Evolution. 1: 52. PMID 28812729 DOI: 10.1038/s41559-016-0052  0.832
2017 Van Belleghem SM, Rastas P, Papanicolaou A, Martin SH, Arias CF, Supple MA, Hanly JJ, Mallet J, Lewis JJ, Hines HM, Ruiz M, Salazar C, Linares M, Moreira GRP, Jiggins CD, et al. Complex modular architecture around a simple toolkit of wing pattern genes. Nature Ecology & Evolution. 1. PMID 28523290 DOI: 10.1038/S41559-016-0052  0.652
2017 Ahrens CW, Supple MA, Aitken NC, Cantrill DJ, Borevitz JO, James EA. Genomic diversity guides conservation strategies among rare terrestrial orchid species when taxonomy remains uncertain. Annals of Botany. PMID 28334284 DOI: 10.1093/Aob/Mcx022  0.441
2016 Nadeau NJ, Pardo-Diaz C, Whibley A, Supple MA, Saenko SV, Wallbank RW, Wu GC, Maroja L, Ferguson L, Hanly JJ, Hines H, Salazar C, Merrill RM, Dowling AJ, ffrench-Constant RH, et al. The gene cortex controls mimicry and crypsis in butterflies and moths. Nature. 534: 106-10. PMID 27251285 DOI: 10.1038/Nature17961  0.753
2015 Supple MA, Papa R, Hines HM, McMillan WO, Counterman BA. Divergence with gene flow across a speciation continuum of Heliconius butterflies. Bmc Evolutionary Biology. 15: 204. PMID 26403600 DOI: 10.1186/S12862-015-0486-Y  0.767
2015 Bragg JG, Supple MA, Andrew RL, Borevitz JO. Genomic variation across landscapes: insights and applications. The New Phytologist. PMID 25904408 DOI: 10.1111/Nph.13410  0.591
2014 Supple M, Papa R, Counterman B, McMillan WO. The genomics of an adaptive radiation: Insights across the heliconius speciation continuum Advances in Experimental Medicine and Biology. 781: 249-271. PMID 24277304 DOI: 10.1007/978-94-007-7347-9_13  0.763
2013 Supple MA, Hines HM, Dasmahapatra KK, Lewis JJ, Nielsen DM, Lavoie C, Ray DA, Salazar C, McMillan WO, Counterman BA. Genomic architecture of adaptive color pattern divergence and convergence in Heliconius butterflies. Genome Research. 23: 1248-57. PMID 23674305 DOI: 10.1101/Gr.150615.112  0.79
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