| Year |
Citation |
Score |
| 2024 |
Yi X, Kemppainen P, Reid K, Chen Y, Rastas P, Fraimout A, Merilä J. Heterogeneous genomic architecture of skeletal armour traits in sticklebacks. Journal of Evolutionary Biology. PMID 39073424 DOI: 10.1093/jeb/voae083 |
0.389 |
|
| 2024 |
Wang D, Rastas P, Yi X, Löytynoja A, Kivikoski M, Feng X, Reid K, Merilä J. Improved assembly of the Pungitius pungitius reference genome. G3 (Bethesda, Md.). PMID 38861393 DOI: 10.1093/g3journal/jkae126 |
0.354 |
|
| 2024 |
Salojärvi J, Rambani A, Yu Z, Guyot R, Strickler S, Lepelley M, Wang C, Rajaraman S, Rastas P, Zheng C, Muñoz DS, Meidanis J, Paschoal AR, Bawin Y, Krabbenhoft TJ, et al. The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars. Nature Genetics. 56: 721-731. PMID 38622339 DOI: 10.1038/s41588-024-01695-w |
0.342 |
|
| 2024 |
de Jong TV, Pan Y, Rastas P, Munro D, Tutaj M, Akil H, Benner C, Chen D, Chitre AS, Chow W, Colonna V, Dalgard CL, Demos WM, Doris PA, Garrison E, et al. A revamped rat reference genome improves the discovery of genetic diversity in laboratory rats. Cell Genomics. 100527. PMID 38537634 DOI: 10.1016/j.xgen.2024.100527 |
0.323 |
|
| 2024 |
Fraimout A, Guillaume F, Li Z, Sillanpää MJ, Rastas P, Merilä J. Dissecting the genetic architecture of quantitative traits using genome-wide identity-by-descent sharing. Molecular Ecology. 33: e17299. PMID 38380534 DOI: 10.1111/mec.17299 |
0.344 |
|
| 2023 |
Cicconardi F, Milanetti E, Pinheiro de Castro EC, Mazo-Vargas A, Van Belleghem SM, Ruggieri AA, Rastas P, Hanly J, Evans E, Jiggins CD, Owen McMillan W, Papa R, Di Marino D, Martin A, Montgomery SH. Evolutionary dynamics of genome size and content during the adaptive radiation of Heliconiini butterflies. Nature Communications. 14: 5620. PMID 37699868 DOI: 10.1038/s41467-023-41412-5 |
0.346 |
|
| 2023 |
de Jong TV, Pan Y, Rastas P, Munro D, Tutaj M, Akil H, Benner C, Chitre AS, Chow W, Colonna V, Dalgard CL, Demos WM, Doris PA, Garrison E, Geurts A, et al. A revamped rat reference genome improves the discovery of genetic diversity in laboratory rats. Biorxiv : the Preprint Server For Biology. PMID 37214860 DOI: 10.1101/2023.04.13.536694 |
0.331 |
|
| 2023 |
Tunström K, Woronik A, Hanly JJ, Rastas P, Chichvarkhin A, Warren AD, Kawahara AY, Schoville SD, Ficarrotta V, Porter AH, Watt WB, Martin A, Wheat CW. Evidence for a single, ancient origin of a genus-wide alternative life history strategy. Science Advances. 9: eabq3713. PMID 36947619 DOI: 10.1126/sciadv.abq3713 |
0.345 |
|
| 2023 |
Löytynoja A, Rastas P, Valtonen M, Kammonen J, Holm L, Olsen MT, Paulin L, Jernvall J, Auvinen P. Fragmented habitat compensates for the adverse effects of genetic bottleneck. Current Biology : Cb. PMID 36822202 DOI: 10.1016/j.cub.2023.01.040 |
0.339 |
|
| 2022 |
Seyum EG, Bille NH, Abtew WG, Rastas P, Arifianto D, Domonhédo H, Cochard B, Jacob F, Riou V, Pomiès V, Lopez D, Bell JM, Cros D. Genome properties of key oil palm (Elaeis guineensis Jacq.) breeding populations. Journal of Applied Genetics. PMID 35691996 DOI: 10.1007/s13353-022-00708-w |
0.337 |
|
| 2022 |
Brien MN, Enciso-Romero J, Lloyd VJ, Curran EV, Parnell AJ, Morochz C, Salazar PA, Rastas P, Zinn T, Nadeau NJ. The genetic basis of structural colour variation in mimetic butterflies. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 377: 20200505. PMID 35634924 DOI: 10.1098/rstb.2020.0505 |
0.317 |
|
| 2022 |
Rifkin JL, Hnatovska S, Yuan M, Sacchi BM, Choudhury BI, Gong Y, Rastas P, Barrett SCH, Wright SI. Recombination landscape dimorphism and sex chromosome evolution in the dioecious plant . Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 377: 20210226. PMID 35306892 DOI: 10.1098/rstb.2021.0226 |
0.301 |
|
| 2022 |
Smolander OP, Blande D, Ahola V, Rastas P, Tanskanen J, Kammonen JI, Oostra V, Pellegrini L, Ikonen S, Dallas T, DiLeo MF, Duplouy A, Duru IC, Halimaa P, Kahilainen A, et al. Improved chromosome-level genome assembly of the Glanville fritillary butterfly (Melitaea cinxia) integrating Pacific Biosciences long reads and a high-density linkage map. Gigascience. 11. PMID 35022701 DOI: 10.1093/gigascience/giab097 |
0.389 |
|
| 2021 |
Kivikoski M, Rastas P, Löytynoja A, Merilä J. Automated improvement of stickleback reference genome assemblies with Lep-Anchor software. Molecular Ecology Resources. PMID 33955177 DOI: 10.1111/1755-0998.13404 |
0.353 |
|
| 2021 |
Celorio-Mancera MP, Rastas P, Steward RA, Nylin S, Wheat CW. Chromosome level assembly of the comma butterfly (Polygonia c-album). Genome Biology and Evolution. PMID 33749729 DOI: 10.1093/gbe/evab054 |
0.386 |
|
| 2021 |
Boyle JH, Rastas PMA, Huang X, Garner AG, Vythilingam I, Armbruster PA. A Linkage-Based Genome Assembly for the Mosquito and Identification of Chromosomal Regions Affecting Diapause. Insects. 12. PMID 33669192 DOI: 10.3390/insects12020167 |
0.422 |
|
| 2021 |
Kemppainen P, Li Z, Rastas P, Löytynoja A, Fang B, Yang J, Guo B, Shikano T, Merilä J. Genetic population structure constrains local adaptation in sticklebacks. Molecular Ecology. PMID 33464655 DOI: 10.1111/mec.15808 |
0.379 |
|
| 2020 |
Bainbridge HE, Brien MN, Morochz C, Salazar PA, Rastas P, Nadeau NJ. Limited genetic parallels underlie convergent evolution of quantitative pattern variation in mimetic butterflies. Journal of Evolutionary Biology. PMID 32939870 DOI: 10.1111/Jeb.13704 |
0.441 |
|
| 2020 |
Rastas P. Lep-Anchor: Automated construction of linkage map anchored haploid genomes. Bioinformatics (Oxford, England). PMID 31913460 DOI: 10.1093/Bioinformatics/Btz978 |
0.463 |
|
| 2019 |
Veltsos P, Ridout KE, Toups MA, González-Martínez SC, Muyle A, Emery O, Rastas P, Hudzieczek V, Hobza R, Vyskot B, Marais GAB, Filatov DA, Pannell JR. Early Sex-Chromosome Evolution in the Diploid Dioecious Plant Mercurialis annua. Genetics. 212: 815-835. PMID 33954407 DOI: 10.1534/genetics.119.302045 |
0.362 |
|
| 2019 |
Veltsos P, Ridout KE, Toups MA, González-Martínez SC, Muyle A, Emery O, Rastas P, Hudzieczek V, Hobza R, Vyskot B, Marais GAB, Filatov DA, Pannell JR. Early Sex-Chromosome Evolution in the Diploid Dioecious Plant Mercurialis annua. Genetics. 212: 815-835. PMID 33954385 DOI: 10.1534/genetics.119.302045 |
0.362 |
|
| 2019 |
Varadharajan S, Rastas P, Löytynoja A, Matschiner M, Calboli FCF, Guo B, Nederbragt AJ, Jakobsen KS, Merilä J. A high-quality assembly of the nine-spined stickleback (Pungitius pungitius) genome. Genome Biology and Evolution. PMID 31687752 DOI: 10.1093/Gbe/Evz240 |
0.503 |
|
| 2019 |
Hill J, Rastas P, Hornett EA, Neethiraj R, Clark N, Morehouse N, de la Paz Celorio-Mancera M, Cols JC, Dircksen H, Meslin C, Keehnen N, Pruisscher P, Sikkink K, Vives M, Vogel H, et al. Unprecedented reorganization of holocentric chromosomes provides insights into the enigma of lepidopteran chromosome evolution. Science Advances. 5: eaau3648. PMID 31206013 DOI: 10.1126/Sciadv.Aau3648 |
0.372 |
|
| 2019 |
Salojärvi J, Smolander OP, Nieminen K, Rajaraman S, Safronov O, Safdari P, Lamminmäki A, Immanen J, Lan T, Tanskanen J, Rastas P, Amiryousefi A, Jayaprakash B, Kammonen JI, Hagqvist R, et al. Author Correction: Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch. Nature Genetics. PMID 31197270 DOI: 10.1038/S41588-019-0442-7 |
0.343 |
|
| 2019 |
Veltsos P, Ridout KE, Toups MA, González-Martínez SC, Muyle A, Emery O, Rastas P, Hudzieczek V, Hobza R, Vyskot B, Marais GAB, Filatov DA, Pannell JR. Early Sex-chromosome Evolution in the Diploid Dioecious Plant . Genetics. PMID 31113811 DOI: 10.1534/Genetics.119.302045 |
0.459 |
|
| 2019 |
Walve R, Rastas P, Salmela L. Kermit: linkage map guided long read assembly. Algorithms For Molecular Biology : Amb. 14: 8. PMID 30930956 DOI: 10.1186/S13015-019-0143-X |
0.418 |
|
| 2019 |
Merrill RM, Rastas P, Martin SH, Melo MC, Barker S, Davey J, McMillan WO, Jiggins CD. Genetic dissection of assortative mating behavior. Plos Biology. 17: e2005902. PMID 30730873 DOI: 10.1371/Journal.Pbio.2005902 |
0.421 |
|
| 2019 |
Morris J, Navarro N, Rastas P, Rawlins LD, Sammy J, Mallet J, Dasmahapatra KK. The genetic architecture of adaptation: convergence and pleiotropy in Heliconius wing pattern evolution. Heredity. PMID 30670842 DOI: 10.1038/S41437-018-0180-0 |
0.439 |
|
| 2018 |
Savriama Y, Valtonen M, Kammonen JI, Rastas P, Smolander OP, Lyyski A, Häkkinen TJ, Corfe IJ, Gerber S, Salazar-Ciudad I, Paulin L, Holm L, Löytynoja A, Auvinen P, Jernvall J. Bracketing phenogenotypic limits of mammalian hybridization. Royal Society Open Science. 5: 180903. PMID 30564397 DOI: 10.1098/Rsos.180903 |
0.369 |
|
| 2018 |
Van Belleghem SM, Vangestel C, De Wolf K, De Corte Z, Möst M, Rastas P, De Meester L, Hendrickx F. Evolution at two time frames: Polymorphisms from an ancient singular divergence event fuel contemporary parallel evolution. Plos Genetics. 14: e1007796. PMID 30422983 DOI: 10.1371/Journal.Pgen.1007796 |
0.42 |
|
| 2018 |
Littrell J, Tsaih SW, Baud A, Rastas P, Solberg-Woods L, Flister MJ. A High-Resolution Genetic Map for the Laboratory Rat. G3 (Bethesda, Md.). PMID 29760201 DOI: 10.1534/G3.118.200187 |
0.413 |
|
| 2018 |
Nguyen NH, Rastas PMA, Premachandra HKA, Knibb W. First High-Density Linkage Map and Single Nucleotide Polymorphisms Significantly Associated With Traits of Economic Importance in Yellowtail Kingfish . Frontiers in Genetics. 9: 127. PMID 29719550 DOI: 10.3389/fgene.2018.00127 |
0.399 |
|
| 2018 |
Li Z, Kemppainen P, Rastas P, Merilä J. Linkage disequilibrium clustering-based approach for association mapping with tightly linked genome-wide data. Molecular Ecology Resources. PMID 29673105 DOI: 10.1111/1755-0998.12893 |
0.452 |
|
| 2018 |
Gutierrez AP, Bean TP, Hooper C, Stenton CA, Sanders MB, Paley RK, Rastas P, Bryrom M, Matika O, Houston RD. A Genome-Wide Association Study for Host Resistance to Ostreid Herpesvirus in Pacific Oysters (). G3 (Bethesda, Md.). PMID 29472307 DOI: 10.1534/G3.118.200113 |
0.437 |
|
| 2017 |
Rastas P. Lep-MAP3: robust linkage mapping even for low-coverage whole genome sequencing data. Bioinformatics (Oxford, England). 33: 3726-3732. PMID 29036272 DOI: 10.1093/Bioinformatics/Btx494 |
0.472 |
|
| 2017 |
Van Belleghem SM, Rastas P, Papanicolaou A, Martin SH, Arias CF, Supple MA, Hanly JJ, Mallet J, Lewis JJ, Hines HM, Ruiz M, Salazar C, Linares M, Moreira GRP, Jiggins CD, et al. Complex modular architecture around a simple toolkit of wing pattern genes. Nature Ecology & Evolution. 1. PMID 28523290 DOI: 10.1038/S41559-016-0052 |
0.408 |
|
| 2017 |
Salojärvi J, Smolander OP, Nieminen K, Rajaraman S, Safronov O, Safdari P, Lamminmäki A, Immanen J, Lan T, Tanskanen J, Rastas P, Amiryousefi A, Jayaprakash B, Kammonen JI, Hagqvist R, et al. Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch. Nature Genetics. PMID 28481341 DOI: 10.1038/Ng.3862 |
0.445 |
|
| 2015 |
Rastas P, Calboli FC, Guo B, Shikano T, Merilä J. Construction of ultra-dense linkage maps with Lep-MAP2: stickleback F2 recombinant crosses as an example. Genome Biology and Evolution. PMID 26668116 DOI: 10.1093/Gbe/Evv250 |
0.467 |
|
| 2015 |
Kvist J, Mattila AL, Somervuo P, Ahola V, Koskinen P, Paulin L, Salmela L, Fountain T, Rastas P, Ruokolainen A, Taipale M, Holm L, Auvinen P, Lehtonen R, Frilander MJ, et al. Flight-induced changes in gene expression in the Glanville fritillary butterfly. Molecular Ecology. 24: 4886-900. PMID 26331775 DOI: 10.1111/Mec.13359 |
0.317 |
|
| 2015 |
Shao C, Niu Y, Rastas P, Liu Y, Xie Z, Li H, Wang L, Jiang Y, Tai S, Tian Y, Sakamoto T, Chen S. Genome-wide SNP identification for the construction of a high-resolution genetic map of Japanese flounder (Paralichthys olivaceus): applications to QTL mapping of Vibrio anguillarum disease resistance and comparative genomic analysis. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 22: 161-70. PMID 25762582 DOI: 10.1093/Dnares/Dsv001 |
0.504 |
|
| 2014 |
Ahola V, Lehtonen R, Somervuo P, Salmela L, Koskinen P, Rastas P, Välimäki N, Paulin L, Kvist J, Wahlberg N, Tanskanen J, Hornett EA, Ferguson LC, Luo S, Cao Z, et al. The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera. Nature Communications. 5: 4737. PMID 25189940 DOI: 10.1038/Ncomms5737 |
0.37 |
|
| 2013 |
Rastas P, Paulin L, Hanski I, Lehtonen R, Auvinen P. Lep-MAP: fast and accurate linkage map construction for large SNP datasets. Bioinformatics (Oxford, England). 29: 3128-34. PMID 24078685 DOI: 10.1093/Bioinformatics/Btt563 |
0.465 |
|
| 2012 |
Mattila AL, Duplouy A, Kirjokangas M, Lehtonen R, Rastas P, Hanski I. High genetic load in an old isolated butterfly population. Proceedings of the National Academy of Sciences of the United States of America. 109: E2496-505. PMID 22908265 DOI: 10.1073/Pnas.1205789109 |
0.32 |
|
| 2012 |
Karinen S, Saarinen S, Lehtonen R, Rastas P, Vahteristo P, Aaltonen LA, Hautaniemi S. Rule-based induction method for haplotype comparison and identification of candidate disease loci. Genome Medicine. 4: 21. PMID 22429919 DOI: 10.1186/Gm320 |
0.322 |
|
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